G70025


Basic Information

Item Value
gene id G70025
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24138293 ~ 24138492 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU83094
tttgtatgatccctcttattttggtaaaataataaacattttgcagattctgaaagggggatgtaaacttttgacctcaactgtatgccTGGTTTGGAATGTGTGGGAAATTTAAGTTATTCTGTATAGCTTTGCTGCAAGTGCTGAGAACTGTTGTTGCATGCGTGTGATTCAGCTTGTCCCCTGTGAACCAATGCCAC

Function

GO: NA

KEGG:

id description
ko00710 Carbon fixation in photosynthetic organisms

RNA

RNA id representative length rna type GC content exon number start site end site
TU83094 True 200 lncRNA 0.40 1 24138293 24138492

Neighbor

gene id symbol gene type direction distance location
bfsp2 bfsp2 coding downstream 22870 24110472 ~ 24115423 (-)
nrbp2a nrbp2a,nrbp2,LOC108267406,LOC108413492,LOC107733885,LOC107599881,LOC107657444 coding downstream 54011 24045734 ~ 24084282 (-)
puf60a puf60a,LOC108267407,LOC108413493,LOC107657443,LOC107718021,LOC107599879 coding downstream 96910 24028301 ~ 24041383 (-)
LOC113540746 NA coding downstream 101439 24036718 ~ 24036854 (-)
LOC113540038 NA coding downstream 128429 24007688 ~ 24009864 (-)
LOC113540393 LOC103037289,LOC107098295,LOC103135689,LOC106524523,LOC108267401,LOC108232979,LOC102237517 coding upstream 1307 24139799 ~ 24145026 (-)
prpf4ba prpf4b,LOC108267396 coding upstream 10080 24148572 ~ 24161793 (-)
b4galt2 b4galt2,LOC107657457,LOC107599894,LOC107700994,LOC107557142 coding upstream 463378 24601870 ~ 24740260 (-)
atp6v0b atp6v0b,LOC102788333 coding upstream 609609 24748101 ~ 24755113 (-)
ptch2 ptch2,LOC107557169,LOC107700991,LOC107720855,LOC107599897,LOC107722076,LOC107657459 coding upstream 745254 24883746 ~ 24911790 (-)
LOC117597086 NA non-coding downstream 206058 23931333 ~ 23932235 (-)
G69916 NA non-coding downstream 215755 23922106 ~ 23922538 (-)
G69691 NA non-coding downstream 486427 23651051 ~ 23651866 (-)
G69649 NA non-coding downstream 543749 23594331 ~ 23594544 (-)
LOC113540115 NA non-coding downstream 684072 23453233 ~ 23454221 (-)
G70026 NA non-coding upstream 7086 24145578 ~ 24145784 (-)
G70027 NA non-coding upstream 7398 24145890 ~ 24146241 (-)
G70044 NA non-coding upstream 40539 24179031 ~ 24179864 (-)
G70540 NA non-coding upstream 734138 24872630 ~ 24872833 (-)
G70906 astn1 non-coding upstream 1271222 25409714 ~ 25445048 (-)
LOC117597117 NA other downstream 606277 23531238 ~ 23532016 (-)
LOC113540013 NA other downstream 620623 23516930 ~ 23517670 (-)
LOC113540114 LOC108267227 other downstream 621934 23515699 ~ 23516359 (-)
LOC117597116 NA other downstream 623358 23514374 ~ 23514935 (-)
LOC113540012 NA other downstream 624254 23513456 ~ 23514039 (-)
G70255 rnf220 other upstream 165882 24304374 ~ 24304926 (-)
ccdc24 ccdc24 other upstream 427249 24565741 ~ 24586048 (-)
ltb4r2b NA other upstream 2233429 26371921 ~ 26376408 (-)
G71596 NA other upstream 2333588 26472080 ~ 26551030 (-)
G71832 NA other upstream 2958110 27096602 ~ 27100858 (-)

Expression


Co-expression Network