ccdc24 (ccdc24)


Basic Information

Item Value
gene id ccdc24
gene name ccdc24
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 24565741 ~ 24586048 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU83444
GGCTGGGCATTTCAGAGCTGCCCCGACACCACTGATACCTGCCCCACCTGCAGGGCAGAGAGccaccagcagggggcagcggGTGGGCAGACGCCTGGCACTCCATCAGACAGGAAACCTGCTCAGTGCCACCTGAACGCACCAGCTCCATATTCTCTCAGATTAAACTGCATGATCTGGCAGCTGGCTTagacatattatttacattataaactTTATAGTAGAGGTTTAACAAAAGACACCGcatgtttacacatttatttcatacatGCAATGCAATTAAACAGCTCAGTTATTCCATAAAAGGCACA
>XM_026936541.2
AATTTCACTGTTTCTCGTTTGTAGCTGAAATCTCGCGATAGTTTGTTCCTAGCAACGCGCTGTTTACATCGATACAGGAAGCGGCGAGGGAATTAGAGTGCACAGAATGGTGTTAAATGAATGATGTCAGTGGCTTAATGGAGCCtgtccagcagcagcagtgtgtatgGAGCCTGATAAAGGAGTGTGTGCCAGACTCTGAGCTTCCTGAGATAAGGGCTATACTTGGGGATGCACTCATAGACATGTACACAGAAATCCACTCTGAGGTGCAGATGTGGGAGCAGATGTGGCATGAGGTGCATGATGGAAAATCCCAGATGCCCCATTCCTCTCTTGCTGACCCTCCAGCTGTTAAAGAGCTGCTGCGTTCTGAGctccagctgctgctgctcagtCTGAGACAGCAAGCCGTTACACTGGGCAGagatGGAGATGAAGTCATGTCCCGGTACAGTCCCAGGGTGGTGAGTTATGCACTCGGCACAGAGAGACAGCGAAGTCCAGACAGCACTGAGTGTACAGCATCAACTAGCAGGCCTGAGTCCAGCAGGTCAAGCTCAAGGCTATCGTCTCACTCCAGCATTGAAGATGAAATTGAAGCTCTGCGCCATAAACTGAACATCACCCATATAAACGAGGTTGTGTCCCATCTAAAATCAGTTCTTACTGAGGAGTGTGAAGTTCTGAAAAATGATGTTCTGTTGCTGCAGgagagTGTGGAGTTGGAATATCTGAAGCAGAGCGGCTTCATGGAGCCCACTCTAACAGAGCTGAAAAAGGAACGGCGACTTATCCAGCAAGACTTGGAAGCCCTGAATCTGATGAATGACTCTACATGCACAGATAAGCTGAAGCCTGATGTTTCTCAGATTCCCAGCAGAGAAATGAAGCTGACTGGTTTGGCAAATGACTCTGAGAAGAAGCAGTCAGTCTCACCAGTCTCACCTAAAACAGATTTTCTTCAACCAAAGCCTCCTCCAGCTGTAGCACTACACGATAACAGACCCGCTCTCCTGGGCAAAACCAGGCACAGAATTTCTCTTAAGGTTACACAGCTTCCAGGGTCGTCCCCAAATCCTCCACAGGAACTGGATTTGGAGAACTCTCATATCCAGCCAGTGCCGCAAATTAGCTCTGCTTCTTCAGCCACTGTACAGAGTTCTCCAAGTGAGTCGAAAATTGCATTTGTAGGATCTGCAACCTGTAGACTTAAAGACAGGGCACTGGCTGGGCATTTCAGAGCTGCCCCGACACCACTGATACCTGCCCCACCTGCAGGGCAGAGAGccaccagcagggggcagcggGTGGGCAGACGCCTGGCACTCCATCAGACAGGAAACCTGCTCAGTGCCACCTGAACGCACCAGCTCCATATTCTCTCAGATTAAACTGCATGATCTGGCAGCTGGCTTagacatattatttacattataaactTTATAGTAGAGGTTTAACAAAAGACACCGcatgtttacacatttatttcatacatGCAATGCAATTAAACAGCTCAGTTATTCCATAAAAGGCACACAGACAGTTgatctttaaaataaactttattttaccATTTGAAATTGAACCATTTAAGATACACAGCTGATGCGACTAAGACAATGTTTGATGCAATTTGGCCCTAAGATTCCAAAGACATGGTTAGATATGTTTGATAGAAAGTTCTGAGCTCATTTTCATGGTGCTTTACTCTCCCTCCCTGCCCTCACAGTAATTTCACCAGGACGTGACAGTAGTGAACAATACAGTAGTGGACACAGACCTGCAGAACCTTTGAGTAGAAGAGAATGGGTGGGGTTGTAATATATGTTGCTATTAAACAGCATAAAAATGATCATGTAAAGTGCTGGAACAGCATGAAAATGCAAGATGATGCATTCTGTTCCCAAATAAAAGGTCTCTTTACGACAGCAAGCATCtggatcaaaaaaaaaaaaatcacagttttagttatgctttactgtcattgtccaaataa
>XM_026936542.2
AATCAATCTAACTAAAGCACGTATTTAATAGTGTTGCTACAAACAGTGGAAAAATAGTTTTAGCCagAGTGCACAGAATGGTGTTAAATGAATGATGTCAGTGGCTTAATGGAGCCtgtccagcagcagcagtgtgtatgGAGCCTGATAAAGGAGTGTGTGCCAGACTCTGAGCTTCCTGAGATAAGGGCTATACTTGGGGATGCACTCATAGACATGTACACAGAAATCCACTCTGAGGTGCAGATGTGGGAGCAGATGTGGCATGAGGTGCATGATGGAAAATCCCAGATGCCCCATTCCTCTCTTGCTGACCCTCCAGCTGTTAAAGAGCTGCTGCGTTCTGAGctccagctgctgctgctcagtCTGAGACAGCAAGCCGTTACACTGGGCAGagatGGAGATGAAGTCATGTCCCGGTACAGTCCCAGGGTGGTGAGTTATGCACTCGGCACAGAGAGACAGCGAAGTCCAGACAGCACTGAGTGTACAGCATCAACTAGCAGGCCTGAGTCCAGCAGGTCAAGCTCAAGGCTATCGTCTCACTCCAGCATTGAAGATGAAATTGAAGCTCTGCGCCATAAACTGAACATCACCCATATAAACGAGGTTGTGTCCCATCTAAAATCAGTTCTTACTGAGGAGTGTGAAGTTCTGAAAAATGATGTTCTGTTGCTGCAGgagagTGTGGAGTTGGAATATCTGAAGCAGAGCGGCTTCATGGAGCCCACTCTAACAGAGCTGAAAAAGGAACGGCGACTTATCCAGCAAGACTTGGAAGCCCTGAATCTGATGAATGACTCTACATGCACAGATAAGCTGAAGCCTGATGTTTCTCAGATTCCCAGCAGAGAAATGAAGCTGACTGGTTTGGCAAATGACTCTGAGAAGAAGCAGTCAGTCTCACCAGTCTCACCTAAAACAGATTTTCTTCAACCAAAGCCTCCTCCAGCTGTAGCACTACACGATAACAGACCCGCTCTCCTGGGCAAAACCAGGCACAGAATTTCTCTTAAGGTTACACAGCTTCCAGGGTCGTCCCCAAATCCTCCACAGGAACTGGATTTGGAGAACTCTCATATCCAGCCAGTGCCGCAAATTAGCTCTGCTTCTTCAGCCACTGTACAGAGTTCTCCAAGTGAGTCGAAAATTGCATTTGTAGGATCTGCAACCTGTAGACTTAAAGACAGGGCACTGGCTGGGCATTTCAGAGCTGCCCCGACACCACTGATACCTGCCCCACCTGCAGGGCAGAGAGccaccagcagggggcagcggGTGGGCAGACGCCTGGCACTCCATCAGACAGGAAACCTGCTCAGTGCCACCTGAACGCACCAGCTCCATATTCTCTCAGATTAAACTGCATGATCTGGCAGCTGGCTTagacatattatttacattataaactTTATAGTAGAGGTTTAACAAAAGACACCGcatgtttacacatttatttcatacatGCAATGCAATTAAACAGCTCAGTTATTCCATAAAAGGCACACAGACAGTTgatctttaaaataaactttattttaccATTTGAAATTGAACCATTTAAGATACACAGCTGATGCGACTAAGACAATGTTTGATGCAATTTGGCCCTAAGATTCCAAAGACATGGTTAGATATGTTTGATAGAAAGTTCTGAGCTCATTTTCATGGTGCTTTACTCTCCCTCCCTGCCCTCACAGTAATTTCACCAGGACGTGACAGTAGTGAACAATACAGTAGTGGACACAGACCTGCAGAACCTTTGAGTAGAAGAGAATGGGTGGGGTTGTAATATATGTTGCTATTAAACAGCATAAAAATGATCATGTAAAGTGCTGGAACAGCATGAAAATGCAAGATGATGCATTCTGTTCCCAAATAAAAGGTCTCTTTACGACAGCAAGCATCtggatcaaaaaaaaaaaaatcacagttttagttatgctttactgtcattgtccaaataa

Function

symbol description
ccdc24 Is expressed in axis; forerunner cell group; nervous system; and ventral mesoderm. Orthologous to human CCDC24 (coiled-coil domain containing 24).

NR:

description
coiled-coil domain-containing protein 24

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU83444 False 311 lncRNA 0.48 1 24566201 24566511
XM_026936541.2 True 1999 mRNA 0.46 9 24565741 24586048
XM_026936542.2 False 1970 mRNA 0.45 9 24565741 24585947

Neighbor

gene id symbol gene type direction distance location
prpf4ba prpf4b,LOC108267396 coding downstream 403948 24148572 ~ 24161793 (-)
LOC113540393 LOC103037289,LOC107098295,LOC103135689,LOC106524523,LOC108267401,LOC108232979,LOC102237517 coding downstream 420715 24139799 ~ 24145026 (-)
bfsp2 bfsp2 coding downstream 450318 24110472 ~ 24115423 (-)
nrbp2a nrbp2a,nrbp2,LOC108267406,LOC108413492,LOC107733885,LOC107599881,LOC107657444 coding downstream 481459 24045734 ~ 24084282 (-)
LOC113540746 NA coding downstream 528887 24036718 ~ 24036854 (-)
b4galt2 b4galt2,LOC107657457,LOC107599894,LOC107700994,LOC107557142 coding upstream 15822 24601870 ~ 24740260 (-)
atp6v0b atp6v0b,LOC102788333 coding upstream 162053 24748101 ~ 24755113 (-)
ptch2 ptch2,LOC107557169,LOC107700991,LOC107720855,LOC107599897,LOC107722076,LOC107657459 coding upstream 297698 24883746 ~ 24911790 (-)
eif2b3 eif2b3,LOC107722074,LOC107700990,LOC107599900,LOC107720854 coding upstream 333479 24919527 ~ 24963880 (-)
cenpl cenpl coding upstream 427158 25013206 ~ 25022416 (-)
G70044 NA non-coding downstream 385877 24179031 ~ 24179864 (-)
G70027 NA non-coding downstream 419500 24145890 ~ 24146241 (-)
G70026 NA non-coding downstream 419957 24145578 ~ 24145784 (-)
G70025 NA non-coding downstream 427249 24138293 ~ 24138492 (-)
LOC117597086 NA non-coding downstream 633506 23931333 ~ 23932235 (-)
G70540 NA non-coding upstream 286582 24872630 ~ 24872833 (-)
G70906 astn1 non-coding upstream 823666 25409714 ~ 25445048 (-)
G70970 NA non-coding upstream 967029 25553077 ~ 25554229 (-)
G71013 NA non-coding upstream 985261 25571309 ~ 25571525 (-)
G71037 NA non-coding upstream 1024189 25610237 ~ 25610440 (-)
G70255 rnf220 other downstream 260815 24304374 ~ 24304926 (-)
LOC117597117 NA other downstream 1033725 23531238 ~ 23532016 (-)
LOC113540013 NA other downstream 1048071 23516930 ~ 23517670 (-)
LOC113540114 LOC108267227 other downstream 1049382 23515699 ~ 23516359 (-)
LOC117597116 NA other downstream 1050806 23514374 ~ 23514935 (-)
ltb4r2b NA other upstream 1785873 26371921 ~ 26376408 (-)
G71596 NA other upstream 1886032 26472080 ~ 26551030 (-)
G71832 NA other upstream 2510554 27096602 ~ 27100858 (-)
G71909 LOC108267490 other upstream 2617735 27203783 ~ 27204186 (-)
trnat-ugu_3 NA other upstream 2809309 27395357 ~ 27395429 (-)

Expression


Co-expression Network