G71734


Basic Information

Item Value
gene id G71734
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26847346 ~ 26859455 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU85024
ccaaaaaaaaaaaaaaaaaaaaaaaaaaaaacacggaaAAGGTTTCGGGTTGGaaagtaaacaaaatgaaattaaaacaaacgAAATTAAAGGGGAAAGATAAAGATGAGCCGGCTTCTGATATTACCTGTGGAAAGAACATAAGAGCCATCAGGCAGGAGAGCTTCAGCGTGTATTTTTAACACCTCACTTCGACtattctctaacacacacacacacacggtcagtgttaacactatacacacacttctctgtgtgcgtgtgtgaaatATCTCACACAACCTGCAGCTCATCAGGtttatatgcaaataaatttCCCTCTATGCCATCAGAGGGGTTGGATCTACTTCCTGTCTACACGCCATCACATCCTCATCACCATCTCAGAGCTCCAGGAAAATTCCAGGAAATAAATCACACATCAttctaaaaatgtaaatcattatgtctataaataatgtcaactggaATTTAATGAggattcaataaaaaaaattggttggggaaaaaagtaaaaataccaataaatagctaaattaatttgataaaaatattgtgaaaattgcaaaacaataattaaaattattacaaaactATTACAAATGCCActactaagaaaaaaatacttaataaataacctctgaattaaaaaatatatatattactacacacatttaaacaatgtGCTTATTTGTAATAGTATGTGAAGTAAATCTGTGCTGAGAGCCAGTGATTgttttttccacatattttttaattatttacaaggAATGTTGATTGTAAAAAGGTCTGAACACCTAAATGAAACAGACCCTGGTTATAATATGATAAGCACAAACAGATGAATCAGGATTATCACAGCTAACTCACAGCTATTACACCGCGAAGTGAAGAGCGTTTATGGTTGACTTTGTTTGAACTGTTGCTAAGCTAACGGCTCCTAGCTAGTCACTGCAGAGCAGGAGGTTAGCATAACGACACGGCCGCGTCCCAAATACCACAATCCCTCCCTATTCCctttataaactttaaaaaaatatgtctcgcacactatgtagtgcacaatACGACCAAGATGGCGTCGTTTGGGACGCCGCCATGTTCTTCCTGTCTGGGTTAAACATTAGCTTGGCCGCTAACAGTTACGAGTCCGACACATCAGTCTGTCCGTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85024 True 1173 lncRNA 0.36 2 26847346 26859455

Neighbor

gene id symbol gene type direction distance location
samd7 LOC108267443 coding downstream 2328 26835646 ~ 26845018 (-)
LOC117597119 NA coding downstream 11458 26835025 ~ 26835888 (-)
LOC113540659 LOC108267452 coding downstream 37096 26808656 ~ 26810250 (-)
map1sb LOC108267453 coding downstream 41979 26792023 ~ 26805367 (-)
pex19 pex19,LOC107591335,LOC107684402,LOC106569376 coding downstream 56432 26787087 ~ 26790914 (-)
nadkb nadkb,LOC108267451,LOC107591341,LOC107738176,LOC108444346,LOC107659414,LOC107557499 coding upstream 22013 26881468 ~ 26889336 (-)
skila LOC108267442 coding upstream 44453 26903908 ~ 26913580 (-)
prkci prkci,LOC107706387,LOC107668962,LOC107659412,LOC107738175,LOC107591345 coding upstream 57704 26917159 ~ 26933519 (-)
LOC113540546 NA coding upstream 121734 26981189 ~ 26982209 (-)
tmem125b LOC108267439 coding upstream 246039 27105494 ~ 27108411 (-)
G71707 NA non-coding downstream 150249 26696893 ~ 26697097 (-)
G71705 NA non-coding downstream 151025 26694946 ~ 26696321 (-)
G71704 NA non-coding downstream 156952 26689070 ~ 26690394 (-)
G71700 NA non-coding downstream 175501 26671641 ~ 26671845 (-)
G71699 NA non-coding downstream 175810 26671260 ~ 26671536 (-)
G71764 NA non-coding upstream 35226 26894681 ~ 26895564 (-)
G71765 NA non-coding upstream 75535 26934990 ~ 26935197 (-)
G71815 NA non-coding upstream 171862 27031317 ~ 27036462 (-)
G71854 NA non-coding upstream 283651 27143106 ~ 27151314 (-)
G71892 NA non-coding upstream 314597 27174052 ~ 27174536 (-)
G71596 NA other downstream 296316 26472080 ~ 26551030 (-)
ltb4r2b NA other downstream 470938 26371921 ~ 26376408 (-)
ccdc24 ccdc24 other downstream 2261298 24565741 ~ 24586048 (-)
G70255 rnf220 other downstream 2542420 24304374 ~ 24304926 (-)
LOC117597117 NA other downstream 3315330 23531238 ~ 23532016 (-)
G71832 NA other upstream 237147 27096602 ~ 27100858 (-)
G71909 LOC108267490 other upstream 344328 27203783 ~ 27204186 (-)
trnat-ugu_3 NA other upstream 535902 27395357 ~ 27395429 (-)
trnat-ugu_4 NA other upstream 536696 27396151 ~ 27396223 (-)
LOC113540508 LOC108268039 other upstream 555812 27415267 ~ 27432678 (-)

Expression


Co-expression Network