Gene
RNA
| Item | Value |
|---|---|
| gene id | G71765 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 26934990 ~ 26935197 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| id | description |
|---|
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU85066 | True | 208 | lncRNA | 0.38 | 1 | 26934990 | 26935197 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| prkci | prkci,LOC107706387,LOC107668962,LOC107659412,LOC107738175,LOC107591345 | coding | downstream | 1471 | 26917159 ~ 26933519 (-) |
| skila | LOC108267442 | coding | downstream | 21410 | 26903908 ~ 26913580 (-) |
| nadkb | nadkb,LOC108267451,LOC107591341,LOC107738176,LOC108444346,LOC107659414,LOC107557499 | coding | downstream | 45654 | 26881468 ~ 26889336 (-) |
| samd7 | LOC108267443 | coding | downstream | 89972 | 26835646 ~ 26845018 (-) |
| LOC117597119 | NA | coding | downstream | 99102 | 26835025 ~ 26835888 (-) |
| LOC113540546 | NA | coding | upstream | 45992 | 26981189 ~ 26982209 (-) |
| tmem125b | LOC108267439 | coding | upstream | 170297 | 27105494 ~ 27108411 (-) |
| cfap57 | cfap57 | coding | upstream | 173615 | 27108812 ~ 27143851 (-) |
| LOC113540028 | NA | coding | upstream | 218302 | 27153499 ~ 27158015 (-) |
| LOC113540236 | LOC108267484 | coding | upstream | 302747 | 27237944 ~ 27261901 (-) |
| G71764 | NA | non-coding | downstream | 39426 | 26894681 ~ 26895564 (-) |
| G71734 | NA | non-coding | downstream | 75535 | 26847346 ~ 26859455 (-) |
| G71732 | LOC108267445,LOC107591334,LOC107684401 | non-coding | downstream | 78318 | 26853267 ~ 26856672 (-) |
| G71707 | NA | non-coding | downstream | 237893 | 26696893 ~ 26697097 (-) |
| G71705 | NA | non-coding | downstream | 238669 | 26694946 ~ 26696321 (-) |
| G71815 | NA | non-coding | upstream | 96120 | 27031317 ~ 27036462 (-) |
| G71854 | NA | non-coding | upstream | 207909 | 27143106 ~ 27151314 (-) |
| G71892 | NA | non-coding | upstream | 238855 | 27174052 ~ 27174536 (-) |
| G71896 | NA | non-coding | upstream | 244737 | 27179934 ~ 27180140 (-) |
| G71903 | NA | non-coding | upstream | 256265 | 27191462 ~ 27191809 (-) |
| G71596 | NA | other | downstream | 383960 | 26472080 ~ 26551030 (-) |
| ltb4r2b | NA | other | downstream | 558582 | 26371921 ~ 26376408 (-) |
| ccdc24 | ccdc24 | other | downstream | 2348942 | 24565741 ~ 24586048 (-) |
| G70255 | rnf220 | other | downstream | 2630064 | 24304374 ~ 24304926 (-) |
| LOC117597117 | NA | other | downstream | 3402974 | 23531238 ~ 23532016 (-) |
| G71832 | NA | other | upstream | 161405 | 27096602 ~ 27100858 (-) |
| G71909 | LOC108267490 | other | upstream | 268586 | 27203783 ~ 27204186 (-) |
| trnat-ugu_3 | NA | other | upstream | 460160 | 27395357 ~ 27395429 (-) |
| trnat-ugu_4 | NA | other | upstream | 460954 | 27396151 ~ 27396223 (-) |
| LOC113540508 | LOC108268039 | other | upstream | 480070 | 27415267 ~ 27432678 (-) |
