G71854


Basic Information

Item Value
gene id G71854
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27143106 ~ 27151314 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU85183
AGACATAATGAAATAATTCCAGCTACAGCTAGAGAAGGAATAATAATTACAGGTTGCAATAttggttttggaaaaaaaaaaaaaaaagacaataattcGTCTGGGAGCCAACTCTTATTAGTGAGCCGAGCCAAATGATCAAATCAATTAAATAAGATGTGACTCATTTcacataaactttttttttttcattttgtttatttcttgtgCCTATCACTGGTCACCAGAGAAAAACTTCCTACTGCCACAGGTAAAGCTACGACATAGAATCGGTGAGTCCTTGGTTCTGATTCGCCACCGAGCCGCCATGTTCGGGGAAAAATGAGTGTAAATCCACACAAACTTTGGCACTTGGAACAGTTGAACAGTGGTGCATTACAAAAAtcctggataaaaaaaatatccaaccAACAAAATGGCAAATTTATCCAGTCAACACATAACTCACAAATCATAAAGGAAAGCAACAACATAAGATGTGACATAAGATGTGATGTTACTGATGTGATCCATCAGTAAGAATCACTACGAGTCACTCCTTAAAGTCCTCctcaaaaacagcacacacacacactacaccaagcttccactatgtgtgtgtgtgtgtgtgtgtgtgtgtgtggagcaacTCGTGCCAACATGGAGGTCCACTGAAGTTCATGTAAGTCCAGTCAGATCTCCATGTTAAAGATGTTAATCACAGTCGCGTCTCATTTCCGCGCCTTCATCTTACGCCGTGCTTCTTTTCCTGGCCGCTTATTCTTCTTTCCACCTTTGCTGAACTTCTTGCCTACTTTGCCGTGAGCGACTTTGGCCCGGAATCCCGACACGTCGTTGTGGCTCTCCTTCGTGTTCCACTTGGAGCCTTTCTTTTTGCCGCCGAACCCAAACTTCGAGTCCTTGTACTTCCTCTTAGCGTTAGGGCTTAAAAACAGATAGCGGGACTTTGCTTAGTGGTAAAAAATGtggtaatttttttgtttttttcccccccagagTCAAAAATCAGATAATATCAAAGAAATAGGCCTGgaggaaaaaatgtaaatcaaatgTACACAAGTTCCTCTTTAGCTCCACCTCCTTTAGGCCCTGTCTCGAAAAGTTTAACAGTTAAATTGTAGAAGAAACAAGATGCGATGTTAATGATAAACACTTTCAACATAATTGTGTAAGAACGGATCATTGTTTATTAGAATTGGTTTAACAATGCAGGTAAAAGATtagagcaaacaaacaaatcttt
>TU85185
AGACATAATGAAATAATTCCAGCTACAGCTAGAGAAGGAATAATAATTACAGGTTGCAATAttggttttggaaaaaaaaaaaaaaaagacaataattcGTCTGGGAGCCAACTCTTATTAGTGAGCCGAGCCAAATGATCAAATCAATTAAATAAGATGTGACTCATTTcacataaactttttttttttcattttgtttatttcttgtgCCTATCACTGGTCACCAGAGAAAAACTTCCTACTGCCACAGGTAAAGCTACGACATAGAATCGGTGAGTCCTTGGTTCTGATTCGCCACCGAGCCGCCATGTTCGGGGAAAAATGAGTGTAAATCCACACAAACTTTGGCACTTGGAACAGTTGAACAGTGGTGCATTACAAAAAtcctggataaaaaaaatatccaaccAACAAAATGGCAAATTTATCCAGTCAACACATAACTCACAAATCATAAAGGAAAGCAACAACATAAGATGTGACATAAGATGTGATGTTACTGATGTGATCCATCAGTAAGAATCACTACGAGTCACTCCTTAAAGTCCTCctcaaaaacagcacacacacacacccacacacacacacacacacacacacacacacacacacacacacacacacaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU85183 True 1246 lncRNA 0.40 2 27148910 27151314
TU85185 False 627 lncRNA 0.38 2 27143106 27151314

Neighbor

gene id symbol gene type direction distance location
tmem125b LOC108267439 coding downstream 34695 27105494 ~ 27108411 (-)
LOC113540546 NA coding downstream 160897 26981189 ~ 26982209 (-)
prkci prkci,LOC107706387,LOC107668962,LOC107659412,LOC107738175,LOC107591345 coding downstream 209587 26917159 ~ 26933519 (-)
skila LOC108267442 coding downstream 229526 26903908 ~ 26913580 (-)
nadkb nadkb,LOC108267451,LOC107591341,LOC107738176,LOC108444346,LOC107659414,LOC107557499 coding downstream 253770 26881468 ~ 26889336 (-)
LOC113540028 NA coding upstream 2185 27153499 ~ 27158015 (-)
LOC113540236 LOC108267484 coding upstream 86630 27237944 ~ 27261901 (-)
LOC113539949 LOC108267483 coding upstream 135847 27287161 ~ 27310976 (-)
si:ch211-107p11.3 LOC108267482 coding upstream 229861 27381175 ~ 27385533 (-)
insl5b LOC108268041 coding upstream 262142 27413456 ~ 27414564 (-)
G71815 NA non-coding downstream 106644 27031317 ~ 27036462 (-)
G71765 NA non-coding downstream 207909 26934990 ~ 26935197 (-)
G71764 NA non-coding downstream 247542 26894681 ~ 26895564 (-)
G71734 NA non-coding downstream 283651 26847346 ~ 26859455 (-)
G71732 LOC108267445,LOC107591334,LOC107684401 non-coding downstream 286434 26853267 ~ 26856672 (-)
G71892 NA non-coding upstream 22738 27174052 ~ 27174536 (-)
G71896 NA non-coding upstream 28620 27179934 ~ 27180140 (-)
G71903 NA non-coding upstream 40148 27191462 ~ 27191809 (-)
G71905 NA non-coding upstream 44176 27195490 ~ 27195813 (-)
G71907 NA non-coding upstream 48104 27199418 ~ 27199741 (-)
G71832 NA other downstream 42248 27096602 ~ 27100858 (-)
G71596 NA other downstream 592076 26472080 ~ 26551030 (-)
ltb4r2b NA other downstream 766698 26371921 ~ 26376408 (-)
ccdc24 ccdc24 other downstream 2557058 24565741 ~ 24586048 (-)
G70255 rnf220 other downstream 2838180 24304374 ~ 24304926 (-)
G71909 LOC108267490 other upstream 52469 27203783 ~ 27204186 (-)
trnat-ugu_3 NA other upstream 244043 27395357 ~ 27395429 (-)
trnat-ugu_4 NA other upstream 244837 27396151 ~ 27396223 (-)
LOC113540508 LOC108268039 other upstream 263953 27415267 ~ 27432678 (-)
tsen15 tsen15 other upstream 323451 27474765 ~ 27483833 (-)

Expression


Co-expression Network