Gene
RNA
| Item | Value |
|---|---|
| gene id | G71896 |
| gene name | NA |
| gene type | non-coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 27179934 ~ 27180140 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| description |
|---|
| PREDICTED: myelin basic protein-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU85232 | True | 207 | lncRNA | 0.38 | 1 | 27179934 | 27180140 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113540028 | NA | coding | downstream | 21919 | 27153499 ~ 27158015 (-) |
| cfap57 | cfap57 | coding | downstream | 36083 | 27108812 ~ 27143851 (-) |
| tmem125b | LOC108267439 | coding | downstream | 71523 | 27105494 ~ 27108411 (-) |
| LOC113540546 | NA | coding | downstream | 197725 | 26981189 ~ 26982209 (-) |
| prkci | prkci,LOC107706387,LOC107668962,LOC107659412,LOC107738175,LOC107591345 | coding | downstream | 246415 | 26917159 ~ 26933519 (-) |
| LOC113540236 | LOC108267484 | coding | upstream | 57804 | 27237944 ~ 27261901 (-) |
| LOC113539949 | LOC108267483 | coding | upstream | 107021 | 27287161 ~ 27310976 (-) |
| si:ch211-107p11.3 | LOC108267482 | coding | upstream | 201035 | 27381175 ~ 27385533 (-) |
| insl5b | LOC108268041 | coding | upstream | 233316 | 27413456 ~ 27414564 (-) |
| cmpk | cmpk1,cmpk,LOC107719256,LOC107681787,LOC107559368,LOC107671754 | coding | upstream | 253552 | 27433692 ~ 27441494 (-) |
| G71892 | NA | non-coding | downstream | 5398 | 27174052 ~ 27174536 (-) |
| G71854 | NA | non-coding | downstream | 28620 | 27143106 ~ 27151314 (-) |
| G71815 | NA | non-coding | downstream | 143472 | 27031317 ~ 27036462 (-) |
| G71765 | NA | non-coding | downstream | 244737 | 26934990 ~ 26935197 (-) |
| G71764 | NA | non-coding | downstream | 284370 | 26894681 ~ 26895564 (-) |
| G71903 | NA | non-coding | upstream | 11322 | 27191462 ~ 27191809 (-) |
| G71905 | NA | non-coding | upstream | 15350 | 27195490 ~ 27195813 (-) |
| G71907 | NA | non-coding | upstream | 19278 | 27199418 ~ 27199741 (-) |
| G71912 | NA | non-coding | upstream | 27062 | 27207202 ~ 27207481 (-) |
| G71918 | NA | non-coding | upstream | 34012 | 27214152 ~ 27214399 (-) |
| G71832 | NA | other | downstream | 79076 | 27096602 ~ 27100858 (-) |
| G71596 | NA | other | downstream | 628904 | 26472080 ~ 26551030 (-) |
| ltb4r2b | NA | other | downstream | 803526 | 26371921 ~ 26376408 (-) |
| ccdc24 | ccdc24 | other | downstream | 2593886 | 24565741 ~ 24586048 (-) |
| G70255 | rnf220 | other | downstream | 2875008 | 24304374 ~ 24304926 (-) |
| G71909 | LOC108267490 | other | upstream | 23643 | 27203783 ~ 27204186 (-) |
| trnat-ugu_3 | NA | other | upstream | 215217 | 27395357 ~ 27395429 (-) |
| trnat-ugu_4 | NA | other | upstream | 216011 | 27396151 ~ 27396223 (-) |
| LOC113540508 | LOC108268039 | other | upstream | 235127 | 27415267 ~ 27432678 (-) |
| tsen15 | tsen15 | other | upstream | 294625 | 27474765 ~ 27483833 (-) |
