G72604


Basic Information

Item Value
gene id G72604
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28011684 ~ 28012804 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU86047
AGGCTTTATTTCCATCAGCAGACAAAAACGGATTTATTTCACATGCCTTCAGCTGATAAAATTAAGATAAAactattctaaaaaaaaacttaaacattGAATATGTTTCTATTAGAATCTGTGACAGCGTATCACGTTATTGCTACAGTAACAGGTGAAGACACGTTAATgttcaataaatatatattttttttctctttttttctgatttatatAATAATCACTATTAATAATGACTGTAAGCAGCATTTTAGGAAGCAAATTAAGATCCTAATAATAAAGtctttatatattaaatgtaactgtagataaaaaaaaaatctagacatgaaatttaaaataaaataaaatgtagggAAAATGATTGTTTAGTTGTTAAGGtacctaataaataaataatgaaaatgaaaggagGAGTATTTAGGGGAAATCTGTTAGTGTGACGGTAATAATTAAGTAGCGTAAACggtggaaaacacacacacgcacaaaaacTCATTAAAGGTACTTAACAATCCAGCGTTCTTTCCCAGCTAGTTTAGTTTTTGTTcgtttttgcacatttaaatctgttttttttttttttttttttgaagaaaagaaaaatatgtgcaTTTAAATGACCCCAGTTCTGCTTctctttctgagtatttctagtAATATGGAGCTTGGAAGCTAACAACAAGtatttaaattagcattttgtATATTAGAATTATATACACATCACATtaaatcattcttttttctgttgtaaAATTTGTCTGTAACAACATACAATTCAAAATTACAGGAtatgttttgggaaaaaaaaaaaatcagaaccctgaataaaaaattcaaatctcagTATTATTAGATTTTAGGTCAAATGTGAAGCATTCAGGATTACCATTCAGGATTTACCAAATAGCTAAATTCCTATTAAACAGCTCACTTtggctgttagctagctaacgatTGCCAGCTAGCTATATACATTAGCATAGCCTAACTGGTTGTAATGTTACCTAAATAGTTACGCTGGACACCCAGTGTTTAGAAAACTCGCTATTTGAACTATTATaacataaatcttttttttttatttattcgaCTACTCTGAAAGTGTCTATTTTTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86047 True 1121 lncRNA 0.28 1 28011684 28012804

Neighbor

gene id symbol gene type direction distance location
dpp6b LOC108267703,LOC108430761 coding downstream 172587 27704281 ~ 27839097 (-)
trnat-ugu_9 NA coding downstream 386876 27624736 ~ 27624808 (-)
trnat-ugu_7 NA coding downstream 390556 27621056 ~ 27621128 (-)
gpr158b LOC108268005 coding downstream 392493 27585574 ~ 27619191 (-)
anxa13l anxa13,anxa13l,LOC108267681,LOC103040954,LOC107727547 coding downstream 480594 27521690 ~ 27531090 (-)
cpdp LOC108268310,LOC108430687,LOC105899208 coding upstream 43908 28056712 ~ 28064529 (-)
tsc22d2 tsc22d2,LOC107709364,LOC103395840,LOC107559349 coding upstream 62812 28075616 ~ 28093937 (-)
ahsg2 LOC108267477 coding upstream 104288 28117092 ~ 28122103 (-)
LOC113540134 LOC108267236 coding upstream 111278 28124082 ~ 28140907 (-)
LOC113540126 NA coding upstream 145025 28157829 ~ 28170981 (-)
LOC117597146 NA non-coding downstream 25828 27974470 ~ 27985856 (-)
G72517 NA non-coding downstream 40889 27569244 ~ 27970795 (-)
G72607 NA non-coding downstream 53196 27912870 ~ 27958488 (-)
G72094 NA non-coding downstream 566570 27444743 ~ 27445114 (-)
G72074 NA non-coding downstream 604865 27403137 ~ 27406819 (-)
G72652 NA non-coding upstream 54778 28067582 ~ 28068084 (-)
G72651 LOC108267776 non-coding upstream 55688 28068492 ~ 28069277 (-)
G72658 pfn2,pfn2l non-coding upstream 68740 28081544 ~ 28144866 (-)
G72665 NA non-coding upstream 126062 28138866 ~ 28140438 (-)
G72709 NA non-coding upstream 330330 28343134 ~ 28383460 (-)
pcyt1aa pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373 other downstream 455697 27547752 ~ 27555987 (-)
tsen15 tsen15 other downstream 527851 27474765 ~ 27483833 (-)
LOC113540508 LOC108268039 other downstream 579006 27415267 ~ 27432678 (-)
trnat-ugu_4 NA other downstream 615461 27396151 ~ 27396223 (-)
trnat-ugu_3 NA other downstream 616255 27395357 ~ 27395429 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other upstream 3260 28016064 ~ 28041785 (-)
LOC117597043 NA other upstream 185187 28197991 ~ 28225603 (-)
trnas-uga_1 NA other upstream 223382 28236186 ~ 28236267 (-)
trnas-uga_2 NA other upstream 223920 28236724 ~ 28236805 (-)
LOC113540437 fam159a other upstream 635520 28648324 ~ 28652425 (-)

Expression


Co-expression Network