G72651 (LOC108267776)


Basic Information

Item Value
gene id G72651
gene name LOC108267776
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28068492 ~ 28069277 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU86108
TTATCACAAGAAcgtgtttattttttgaaatattatttagaaaaaaaaaaaagtttaaaacacCCAGCTGTTCAACAAAAAACTCAATACGCACTAACCAATCTCCTGGCAGGTcgtaaaacatttttaaaaaaatttgcttAACGTAAAAAGATCAGCTTAATATTAGACAAATAAGCAAAACACAGGAACTCCggctttggaaaaaaaaaggaactgtcACTGAAAAATTGGCAAATGCGGAACTTATGGAAATTATGGAAAGAATTCCTGTCAAATCCGTATCCCGACCTTGGGGAAAAAGAAGTCTCTTCGGAGCAGGAAAGTCTGTTCAAAGAGCATCAGAGCAGCTGAGGAGAAAAGCCGTCCGTCAGCGTGCTGCCGCAAAGGTGCCAAGGGAGTCATGTGACCTCGGCGGGCTTGTGTGATTGGCTCTCCGTGTCAGGTGCTAGCCCACGGTGACAAAGCGTCCGCCTCTGGCGTTCTGCTGCGTTGCCGCCATGCGCTTCATCTTCAGGATGCGGAAGCGCTCGTTAAGCGTCATGGCCGTCTGCTGTTTTCCCACGCTGTTGATGTCGAACTGCAGCGCCACCCCTTTGGGCTTTTTCCTCTCAGGCTCTGGTGCTGTGTTCTGAGGAGGTGGAGTCACCATGGGTGGGTGGAGCGACCACGAGTGGGCGG

Function

NR:

description
PREDICTED: UAP56-interacting factor-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86108 True 681 lncRNA 0.47 2 28068492 28069277

Neighbor

gene id symbol gene type direction distance location
cpdp LOC108268310,LOC108430687,LOC105899208 coding downstream 3963 28056712 ~ 28064529 (-)
dpp6b LOC108267703,LOC108430761 coding downstream 229395 27704281 ~ 27839097 (-)
trnat-ugu_9 NA coding downstream 443684 27624736 ~ 27624808 (-)
trnat-ugu_7 NA coding downstream 447364 27621056 ~ 27621128 (-)
gpr158b LOC108268005 coding downstream 449301 27585574 ~ 27619191 (-)
tsc22d2 tsc22d2,LOC107709364,LOC103395840,LOC107559349 coding upstream 6339 28075616 ~ 28093937 (-)
ahsg2 LOC108267477 coding upstream 47815 28117092 ~ 28122103 (-)
LOC113540134 LOC108267236 coding upstream 54805 28124082 ~ 28140907 (-)
LOC113540126 NA coding upstream 88552 28157829 ~ 28170981 (-)
LOC113540124 NA coding upstream 104044 28173321 ~ 28196057 (-)
G72652 NA non-coding downstream 408 28067582 ~ 28068084 (-)
G72604 NA non-coding downstream 55688 28011684 ~ 28012804 (-)
LOC117597146 NA non-coding downstream 82636 27974470 ~ 27985856 (-)
G72517 NA non-coding downstream 97697 27569244 ~ 27970795 (-)
G72607 NA non-coding downstream 110004 27912870 ~ 27958488 (-)
G72658 pfn2,pfn2l non-coding upstream 12267 28081544 ~ 28144866 (-)
G72665 NA non-coding upstream 69589 28138866 ~ 28140438 (-)
G72709 NA non-coding upstream 273857 28343134 ~ 28383460 (-)
G72720 NA non-coding upstream 296380 28365657 ~ 28379132 (-)
G72726 NA non-coding upstream 328384 28397661 ~ 28471771 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 26707 28016064 ~ 28041785 (-)
pcyt1aa pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373 other downstream 512505 27547752 ~ 27555987 (-)
tsen15 tsen15 other downstream 584659 27474765 ~ 27483833 (-)
LOC113540508 LOC108268039 other downstream 635814 27415267 ~ 27432678 (-)
trnat-ugu_4 NA other downstream 672269 27396151 ~ 27396223 (-)
LOC117597043 NA other upstream 128714 28197991 ~ 28225603 (-)
trnas-uga_1 NA other upstream 166909 28236186 ~ 28236267 (-)
trnas-uga_2 NA other upstream 167447 28236724 ~ 28236805 (-)
LOC113540437 fam159a other upstream 579047 28648324 ~ 28652425 (-)
LOC117597168 NA other upstream 718337 28787614 ~ 28791829 (-)

Expression


Co-expression Network