G72665


Basic Information

Item Value
gene id G72665
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28138866 ~ 28140438 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU86139
GGCACCACAGCGGAACAGACAAAGGTCCCCCTTTAGAGGGAGAATGTCGACTAACGACGGTACAAAGTCCTTCGAGAGGCTGCAGTAATGCTTAATATATCTCTCTGTGGGTCCTACCTTTATTAAACAGCTTCACGTGGTATTTACAcctctaaaaaaacaaaagaaaatgtgttttccaTCAGCAAACAGTGAGcgaacaaaaaaaatgtccacaacaaaacaaatgggcGCTGCACCTCCCCCTGTTCAATACTCCTGACGTCGCAATAAGCTGAGTGCTCATTGGTTGTTTCCGCTTGCCAAACGTTAAATATGACAGTATAAGGTCGTCTGCGTGctatttagtgcactacatgtcaaGAGCGTATCATTTTGATATCGATGCCAAGTATAAAACAACACTTTggaaaaatgttataaaacatCTACAAAATGGGTCAAACAATTCTGATATCTTTTCTATGAGCATAACATCACAGTGCTGTATAATTCTACACCTGCTTCTACACTTAATTCCTTAAATGTCCTGAATTCCTACTTTGGGTTAAGGTGTAAATCTTTGTGTTTGGAAGACCAATTTTAAAGGAGGCTGcattacagtttcccttcactggaactaagaagcccaaacccggtccagcatgacaatggccctgtgcacaaagcaagctccatgaagacatggtgtgttaagattggagtggaagaactttctgcacagagccctgacctcaaccccattgaacaccattgggatgaactggaacaccgactgcaccccagatatcctcctcacccaacatcagtgcctgacctctctagtgctcttgtagctgaatgaacacaaatccccacagccacactccaaaatctagtggaaagccttcccagatgagtggaggttattataacagcaaagggactaaatctgaaatgggatgttcaacaagaacataGTGTTATGATCaggggtccacaaactttttagccatatggtgtgtgtgtgtgtgtgtgtgtgcgtgtgcgcgcgcgtgcaTTGGGGGGTGGGCAGGGGGTCAGTAATATGACTATCATCTGATATGGAAAGTCTTGCTTGTTTGACAGAAATAGCTCAGGCTTATTTACCTCACTGAAGTGTGTATTACACTGGGGTGTAGTGTTGTGGCCCAACACAAAGGCAAGATACTGTTTTGCCTGAAGCTGATTAGCATGttctgaactgttttattcttcatataccacagcaatttgtcaacaattaaaattttttaaaaataaagaacatcatactttttatccatttattggatttatatttacaacattatatttacatgtaatatTGTAGGGCagccatgaaacaagttagttcctttttctcatttacattatagcagctgtaaacagttattcttttaccagcctctcttttatctctcctgaagttagtgaaacaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86139 True 1467 lncRNA 0.41 2 28138866 28140438

Neighbor

gene id symbol gene type direction distance location
ahsg2 LOC108267477 coding downstream 16763 28117092 ~ 28122103 (-)
tsc22d2 tsc22d2,LOC107709364,LOC103395840,LOC107559349 coding downstream 44929 28075616 ~ 28093937 (-)
cpdp LOC108268310,LOC108430687,LOC105899208 coding downstream 74337 28056712 ~ 28064529 (-)
dpp6b LOC108267703,LOC108430761 coding downstream 299769 27704281 ~ 27839097 (-)
trnat-ugu_9 NA coding downstream 514058 27624736 ~ 27624808 (-)
LOC113540126 NA coding upstream 17391 28157829 ~ 28170981 (-)
LOC113540124 NA coding upstream 32883 28173321 ~ 28196057 (-)
cdc73 cdc73 coding upstream 98458 28238896 ~ 28275315 (-)
ro60 trove2 coding upstream 136258 28276696 ~ 28286658 (-)
shha shh coding upstream 335993 28476431 ~ 28491847 (-)
G72651 LOC108267776 non-coding downstream 69589 28068492 ~ 28069277 (-)
G72652 NA non-coding downstream 70782 28067582 ~ 28068084 (-)
G72604 NA non-coding downstream 126062 28011684 ~ 28012804 (-)
LOC117597146 NA non-coding downstream 153010 27974470 ~ 27985856 (-)
G72607 NA non-coding downstream 180378 27912870 ~ 27958488 (-)
G72709 NA non-coding upstream 202696 28343134 ~ 28383460 (-)
G72720 NA non-coding upstream 225219 28365657 ~ 28379132 (-)
G72726 NA non-coding upstream 257223 28397661 ~ 28471771 (-)
G72796 NA non-coding upstream 526885 28667323 ~ 28668643 (-)
LOC117597077 NA non-coding upstream 572596 28713034 ~ 28717955 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 97081 28016064 ~ 28041785 (-)
pcyt1aa pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373 other downstream 582879 27547752 ~ 27555987 (-)
tsen15 tsen15 other downstream 655033 27474765 ~ 27483833 (-)
LOC113540508 LOC108268039 other downstream 706188 27415267 ~ 27432678 (-)
trnat-ugu_4 NA other downstream 742643 27396151 ~ 27396223 (-)
LOC117597043 NA other upstream 57553 28197991 ~ 28225603 (-)
trnas-uga_1 NA other upstream 95748 28236186 ~ 28236267 (-)
trnas-uga_2 NA other upstream 96286 28236724 ~ 28236805 (-)
LOC113540437 fam159a other upstream 507886 28648324 ~ 28652425 (-)
LOC117597168 NA other upstream 647176 28787614 ~ 28791829 (-)

Expression


Co-expression Network