G72709


Basic Information

Item Value
gene id G72709
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28343134 ~ 28383460 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU86202
CATCTTTAAtcgttaataaataattcagaaGGAATGCCGATACTTTCAACTTCGTTTTATTTTATAGACAGCATAGCAGAAATCATGCAACTACAACagtaaacacagacaaaaagaaaaacaagtcaaAAAAAGTtcctcaaataaaataaagctttcGTTCATGTCGAGTCTTCATCATTTCCCTGAACTGAAGTCCTGTTAGCGAGTCGTGTTAATATGTTCTCTTCCAGCCGcttctgtgcacacacacacacacacacacggccttAATAAAGTCACACACCTCCATATCAAACATTTTACTAATACTACTCAACAGGTAAAACGTGACGATACACACTTTTTACTCAGAACAGTAGAAGTGGTCATTGGCGTCATTAAAATCAGTTTGTGCGTGAACGTAAACTACCTCTGAATGTGAGTTATTGCTTCTTCGTACTGCATATGATCCTTTacgaaataaaaaataaaatcaaaataaatatcaaGGCTCGTTATACCTGATTGCACTTAAAATCTTTGCTCAAGTTCAAAAATTGCCGTATTTTCCAGAATATAAGGCGCACCTCGTAAATTCTCACTATAAATCTGCTATATAGCAAGgacaccaaaaatatttttctgattggctgatgagttttaattattttaaatctggTCAAGCAGTTTATTGATGTTCCTGATACTACGTCTTgccaaaatatgcaaatatttaagCTAAtgcaaaagaaatatataacatatatacaaTTGTTGTGTAAATCTAACCTAGGAAATGCTATATAGTCCTAAAAACTGCTGCTTGCATCTTAAtttttgcgaagtcttgccaacaaCTTTATATATTACGCCTTGTTCTCCAGCTCTGGCGCAACCACATGTGAGCCAATCAGAGCCTGTGCTGGGCGGAGCATCTTTAAACAACTGAGGTTTGTAGTCCCGTTGTGAACTTGACCTCACATTCCAGAATATACGGCACATTTTTGTGCGATTAGAAGAAGAATGGATTACACATGGTCAGCAAAACGCAATGAACAAAgtggagaagaaaaaagtgacaaaagCACTCATTCTATAATACACATGCAATCACAGATTGCAAAATCTTCAAggctgcaataaaaaaaatgttccttttttttttttaaacaaaggaccttcataaaaaagaaacatgtccATGTGTGTATTTAAGTGTACACATGTGCCaattcacaaaaatatcatgatattaaacatgtaacattttttaaaatctttgatTATTCATCGTAAGTCTGTATTCCATCCTCGGAATTAATTTTCTCTGAATGTTCATGTTGAACATCACGATATATATCGCATAATTGATAACTGAAACATACCTAGTGCTCTATAAAGGCGTACATGAATTAACCTTGCATCATGACACATCATATAGAATGTTATTAAACGATAATATTTCATTTGGCAAAGGAGTCTCACTGCAAAGTAACACTAgtaataattgttattaatagtaataacaatattagCAAACGTTTACGCCTCCTCTTTGGAtggcagacattttttttctgcggCCTTGAAACTTTTCCCTTTTCATTTAATaccattttccagcacaaaatgaaaaatcgAAACAATGAAGCACGTATTTGGCCACCAtcttttccacacacacacacgcacacacacacacg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86202 True 1685 lncRNA 0.35 2 28343134 28383460

Neighbor

gene id symbol gene type direction distance location
ro60 trove2 coding downstream 56476 28276696 ~ 28286658 (-)
cdc73 cdc73 coding downstream 67819 28238896 ~ 28275315 (-)
LOC113540124 NA coding downstream 147077 28173321 ~ 28196057 (-)
LOC113540126 NA coding downstream 172153 28157829 ~ 28170981 (-)
LOC113540134 LOC108267236 coding downstream 202227 28124082 ~ 28140907 (-)
shha shh coding upstream 92971 28476431 ~ 28491847 (-)
lmbr1 lmbr1 coding upstream 191448 28574908 ~ 28605243 (-)
LOC113540234 csrp1a,LOC100304834,LOC107697020,LOC107559179,LOC108425502,LOC107673143,LOC107707378 coding upstream 227731 28611191 ~ 28619112 (-)
LOC113540232 LOC108267757,LOC108430781,LOC107591375,LOC107668940 coding upstream 236356 28619816 ~ 28628143 (-)
dcaf8 dcaf8 coding upstream 249294 28632754 ~ 28642395 (-)
G72658 pfn2,pfn2l non-coding downstream 198268 28081544 ~ 28144866 (-)
G72665 NA non-coding downstream 202696 28138866 ~ 28140438 (-)
G72651 LOC108267776 non-coding downstream 273857 28068492 ~ 28069277 (-)
G72652 NA non-coding downstream 275050 28067582 ~ 28068084 (-)
G72604 NA non-coding downstream 330330 28011684 ~ 28012804 (-)
G72726 NA non-coding upstream 14201 28397661 ~ 28471771 (-)
G72796 NA non-coding upstream 283863 28667323 ~ 28668643 (-)
LOC117597077 NA non-coding upstream 329574 28713034 ~ 28717955 (-)
G72824 otol1a,LOC108267659,LOC103045957,LOC108430690,LOC107701323,LOC107560771,LOC107593893,LOC107722646,LOC105899147 non-coding upstream 399463 28782923 ~ 28784140 (-)
G72893 NA non-coding upstream 448924 28832384 ~ 28833720 (-)
trnas-uga_2 NA other downstream 106329 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 106867 28236186 ~ 28236267 (-)
LOC117597043 NA other downstream 117531 28197991 ~ 28225603 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 301349 28016064 ~ 28041785 (-)
pcyt1aa pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373 other downstream 787147 27547752 ~ 27555987 (-)
LOC113540437 fam159a other upstream 264864 28648324 ~ 28652425 (-)
LOC117597168 NA other upstream 404154 28787614 ~ 28791829 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other upstream 490118 28873578 ~ 28884965 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 765178 29148638 ~ 29171921 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 1180761 29564221 ~ 29575727 (-)

Expression


Co-expression Network