G72720


Basic Information

Item Value
gene id G72720
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28365657 ~ 28379132 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU86215
aaaaaaaaaaaaaaaaaaactacaaggaaaggttaaaacaataaacaaaaaatgtttaaaacattaatttataagaaaaacgtttaaaacaaacaaacaaaaagtttttttttttgccagtttcacatattacactttacacttgaATATTTACTAATGAAGCTCTCacgtatagtgtgtgtacagtgtgtgtgtgtatagtgtgtgtgcagaagttTGGTAAGGTTTGGTAAGGATACGGCACTGGCGTGGTTGATGCCGACGAAAACAGCGATGCAGCGCATGACACTCGCCCACTCGCGCTTAAACTTGTGCGGCTCTCCAAGATGGCTGTCCAGATACGGATACAACAAACCCACCACAGCtgcagaaacacaacacaaaaacgTTAGCATGAGTCAGTTAGGGCATGCAATTCATTCAAAATGCTAAGACTGCTAACAAAGCTTAGAAGTTAATCATTGCTAGGTAGCTTGATATCATTTGGTGGCTAGCAATATTAGTATTTTGGTTACAGCGTTCCTTTAAATCCttcaaatgtttcatttataataCATTCTTACATTCGTTGTTTGCGTTATCTAGCTATTTTTGTATCTAGCTAAGAGTTTAATGTCTTTACCTGAACAAAGCACTTACGAGATGAATCATGActccatgaaaaaaagaaagaaagaaggactAAAGAGGAAAGAACTACTGTTTCCGAAAAATGCTTTGCGAATGATGTCACTTTTGTTCGACTTTTTAAGCTCGTTTCAGGTAAACaacattttcatcaaaaatgCTGGaccaatcccacaatgcacgACACTGTGATATCGATCTACATGCCACGTATTTCCATGGTTACAGTGATGAGACTGAAATGAGACATCGGAAAATCAAACACTATTCGTAAGGAAACAAGGGTTATGACATCACAAATacgttattataattattatttttttagaacaAAGCCAATTCTCTGAAATTACAGTTGTACTCGACAATAACAAGATGTATTGCcgattttgtatttattttcttcaatCTTTGGCTGCTGACGACTGAAGTTTAATCATTCAGAGCTTTTTTCCTCACATTTTCCTGTgaattttattgtttgttttgtccgATTCTATAACTGTATCATTTATCATTACTGCTATCATCTTAATACATGttaatatgtattatgtattaaaaaaaaatacatacaatggttaaatacatacaaaaaatagCCATACGTTTGGGGCAAAGTGTGTTTTTAgagtgataaataataaaaaaactgaatgttCACTactagccaaaagtttgtgcacccctgctCATAGAAAGTCCTTCATTAATACTATTTTGGAGGAACGTTAAatctattaatatataaaataacacatattgAATTATATAGCGACTgagaaaagtgttaaacaaatcaaaattagtttagattttaaatgaacagtattcctgatgaaACTTTACACACTTTCAGCATCTTCTCAACTAGCTCATGAGGAGTTTCACACAGGTTTTGGGGAAATAACCTCATATCAAATAACTActcataaaaatacatttgaattcataaataaatttatacatgatGATGAACTTCACTATTTTGTCTTAATAAATTTCAACTATTTATGAAAAAGCCTTTAAAACAGTGAAAACCTGGTGTGTCCAAACTTCTGACTGGTGATGtatatgtaaaagaaaaactcaaataaaaattcattttaaattagtCAACCTTCAAAGAGTTACATTTCATACTAAACAGtatgtcaaaaataaataataataataataataataataataataataataatgctactTTATGTGCTTAGTTTGTGAGATACAGTTCTCTTTTGTCCTCATCTCTGCCTGAGGTAAGTGGAATGTGGGCGTGGCCGAGTGACGTatcacttatactacacacacacacacacacacacacatgtatatacacacaccacttccgTGTTTCTCTTTGTCGTTAAATGGCGTGTTCTAGCAATCAGCCAATAGCGTGCGTTTGCGCCGCTCACCCGTTTTTGGGACGAGCCAATGAGAGAGCAGCGCACGCGGTCTGACATGCAGCTGCTTCCTTTAGTGTTTTTttttttttttttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86215 True 2137 lncRNA 0.33 2 28365657 28379132

Neighbor

gene id symbol gene type direction distance location
ro60 trove2 coding downstream 78999 28276696 ~ 28286658 (-)
cdc73 cdc73 coding downstream 90342 28238896 ~ 28275315 (-)
LOC113540124 NA coding downstream 169600 28173321 ~ 28196057 (-)
LOC113540126 NA coding downstream 194676 28157829 ~ 28170981 (-)
LOC113540134 LOC108267236 coding downstream 224750 28124082 ~ 28140907 (-)
shha shh coding upstream 97299 28476431 ~ 28491847 (-)
lmbr1 lmbr1 coding upstream 195776 28574908 ~ 28605243 (-)
LOC113540234 csrp1a,LOC100304834,LOC107697020,LOC107559179,LOC108425502,LOC107673143,LOC107707378 coding upstream 232059 28611191 ~ 28619112 (-)
LOC113540232 LOC108267757,LOC108430781,LOC107591375,LOC107668940 coding upstream 240684 28619816 ~ 28628143 (-)
dcaf8 dcaf8 coding upstream 253622 28632754 ~ 28642395 (-)
G72658 pfn2,pfn2l non-coding downstream 220791 28081544 ~ 28144866 (-)
G72665 NA non-coding downstream 225219 28138866 ~ 28140438 (-)
G72651 LOC108267776 non-coding downstream 296380 28068492 ~ 28069277 (-)
G72652 NA non-coding downstream 297573 28067582 ~ 28068084 (-)
G72604 NA non-coding downstream 352853 28011684 ~ 28012804 (-)
G72726 NA non-coding upstream 18529 28397661 ~ 28471771 (-)
G72796 NA non-coding upstream 288191 28667323 ~ 28668643 (-)
LOC117597077 NA non-coding upstream 333902 28713034 ~ 28717955 (-)
G72824 otol1a,LOC108267659,LOC103045957,LOC108430690,LOC107701323,LOC107560771,LOC107593893,LOC107722646,LOC105899147 non-coding upstream 403791 28782923 ~ 28784140 (-)
G72893 NA non-coding upstream 453252 28832384 ~ 28833720 (-)
trnas-uga_2 NA other downstream 128852 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 129390 28236186 ~ 28236267 (-)
LOC117597043 NA other downstream 140054 28197991 ~ 28225603 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 323872 28016064 ~ 28041785 (-)
pcyt1aa pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373 other downstream 809670 27547752 ~ 27555987 (-)
LOC113540437 fam159a other upstream 269192 28648324 ~ 28652425 (-)
LOC117597168 NA other upstream 408482 28787614 ~ 28791829 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other upstream 494446 28873578 ~ 28884965 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 769506 29148638 ~ 29171921 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 1185089 29564221 ~ 29575727 (-)

Expression


Co-expression Network