G73247


Basic Information

Item Value
gene id G73247
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29128055 ~ 29196167 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU86818
CAGTACTGACACACAGGCGAGCTTTCCAATCATTACAATTTTATTGAACGACAGGTCAACAATGCTAAACAGTCAAAACCAACAATTGTctgcaaaaaaatacaaaagaaaacaacaaagccCTAAATGCAAAAGGATATACATTCCATAGTTTCAACAGTACATGACATGAAACCGTTTGTGTTTACCTCCCGGCCACGCTCCCCATTTCTCAGATAGCCTCCGATTATGTCTTCTTTTCTACACCCGCAATGAATTCTGTTGTGGACAGTTTGCTCAGAAGGACATAGCATACTGCATGCATACCACAACATATGCAGCAACGGACAACAAAACACTCTCCAATGAACTGCCTAGAGCAAGCAAGTGTGctatgcaaaaaaatatatatatataaataaaaaaaaaaaaaaaaaaagattagaagaaagaaatataaatatcaagTATATACTCTGATACTTTTTGGTTTGGAGCGCAGCACAAAACCCGACTTCGTATTCCTCCGTCCTAAAAGCTCAGTCGCTTATACTCGCTCGCCAGTCTAACACAGGAGGCGGAGTTTGTCGgaatacagacagagagaggaaataacGCACCGCCTCTCGCACCCCCCTCAGTCCATGCTAGGTGGAGCTAAAGCACTTCATACAGAGAGCTAGCGTTAACACAGGAGATTTGAACCAGAATGCTCTGTACAGCAGAGTGAAAGATTGAGCGCAAGGTCACAGCTTGTTTCCAGGTTATTTTTCCTACGTGATGATGGTGGGTGGATGCTAGTGATGCTGATGAGCCATGTATAAGTGCAGgataatggtgtgtgatgttctgTAGAGTTCCATGGTGTTTAACAGGGGTCCAGGACCAGGCAGATCTGCTCGAACACATCGTCAGGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86818 True 897 lncRNA 0.43 2 29128055 29196167

Neighbor

gene id symbol gene type direction distance location
pigk pigk,LOC107751867,LOC107599845 coding downstream 50619 29055012 ~ 29077436 (-)
LOC113540041 dnajb4,LOC108430719,LOC107599850,LOC107681825,LOC107751861 coding downstream 209903 28911613 ~ 28918152 (-)
LOC117597036 NA coding downstream 247853 28877573 ~ 28880202 (-)
gipc2 gipc2,LOC108430720 coding downstream 266612 28842922 ~ 28861443 (-)
LOC113540190 NA coding downstream 300091 28798977 ~ 28827964 (-)
dipk2aa dia1a,LOC108268022,LOC108437525,LOC107681802,LOC107599840,LOC107722302,LOC107565821 coding upstream 104139 29300306 ~ 29322917 (-)
chst2a LOC108268021 coding upstream 136952 29333119 ~ 29336703 (-)
pcolce2a LOC108268019 coding upstream 163333 29359500 ~ 29371526 (-)
mfsd8l2 LOC108267997,LOC108437504 coding upstream 245948 29442115 ~ 29452793 (-)
kcnmb2 NA coding upstream 264874 29461041 ~ 29466020 (-)
G73248 NA non-coding downstream 73828 29053597 ~ 29054227 (-)
G73264 NA non-coding downstream 84085 29043760 ~ 29043970 (-)
LOC113540203 NA non-coding downstream 98864 28940662 ~ 29029191 (-)
G73243 NA non-coding downstream 139672 28986472 ~ 28988383 (-)
LOC117597038 NA non-coding downstream 231256 28892016 ~ 28896799 (-)
G73318 LOC107599861 non-coding upstream 17386 29213553 ~ 29215051 (-)
G73319 NA non-coding upstream 20103 29216270 ~ 29218158 (-)
G73327 NA non-coding upstream 77422 29273589 ~ 29320334 (-)
G73423 NA non-coding upstream 343928 29540095 ~ 29540356 (-)
G73439 NA non-coding upstream 411434 29607601 ~ 29607805 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 243090 28873578 ~ 28884965 (-)
LOC117597168 NA other downstream 336226 28787614 ~ 28791829 (-)
LOC113540437 fam159a other downstream 475630 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 891250 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 891788 28236186 ~ 28236267 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 368054 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 528421 29724588 ~ 29730857 (-)
G73619 blvra other upstream 823339 30019506 ~ 30022525 (-)
LOC113540055 LOC108268301 other upstream 1545360 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 1577282 30773449 ~ 30775819 (-)

Expression


Co-expression Network