usp33 (usp33,LOC106569751,LOC107708728,LOC107751869)


Basic Information

Item Value
gene id usp33
gene name usp33,LOC106569751,LOC107708728,LOC107751869
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29148638 ~ 29171921 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU86878
ttcacTTATGCAGCTGAACAAGGCGTTTCAGGAGGAGGAGGCCCCCGTGGTCATCTACTGCATCAGCATGCAGTGGTTCCGTGAATGGGAGGCTTTCGTCAAAGGCAAGGACAACGatcCTCCAGGACCTATCGACAACTCCAAGATCGCTGTGAATAAAAACGGCCACGTCACGCTCAAGCAAGGCGCCGATTCGGGTCAGATCTCCGAGGAGACGTGGAACTTCCTGCACTCGATCCACGGCGGCGGTCCTGTGGTGACGGTGCGACCCAGCGTGAGCCACCAGGATCCCCGACGCCTCTCAGGCTGAGGAGAAGATCGAGGTGGAGACTCGCAGCTTATAGAGAAACAGGAAATCGTTCACTTTTGCACTTgcctttctctcacacactcttcattcCCTGCGTGCATTCCTTACAAGTAATAAGTTAATAAACGTTGTGAATTACGCTTCATGTTTGTATATACggcagttagttagttagttagttagttagttcgTTTAAATTGGACTGAAAATCAAATTTACACGTTTTCTCCCTTCCTCCTGTGTCGTCCTTCGGCCAGGACACATTTGTCATCTGACGTTTGCgtattttagtttaaaaattaGCTACAAAAGCACATATCAGACAACAAACATATCTTTGGTGATTGATGGAATTTTAGGGAACAGTTTCATTGTAtaaattgaatttttattttatttttttttttgatgaactATCCCTTTAAAACAGCGATAAAGTGATAATTCACACTGCTGGACacgtattaaataaaataatgcttaaGTATCAATTAGCAGCTGGACGACACCTTTCGGTGCTGCGTAATGAATTAAATtgctcacttcctgttcctgttcctgttcctgtgtgACCATTAGCAAACTAATAAAATGTGACTCTTATTGCTCCTTTAAAGCCAATTCTTACAGATCCTGTCGAGGATATGCCTGATGTTGTATATATATCTTATTCAGGTGCAGTCTAAGCTGAAGGAAAAGTGTCTTCGTGAACGACGTGTGCGATTACGAGGGGATCAAAAGCACTAAGAACCGTATTTTCCGGAATATGTGTAACCTCAGAGTTTAAGATGCTTAGAACACAAATTTGAATTTAGGTTTTGTCCCTTTAGTGTTGCCGTAACTTAGCGATTTTACTCCCTCTGTCCTAATAAAGACGTCGTTATGCATCAGCGTTTAATAACGAAGTCTTGTTCACTTTAGACGTAGATTTGTTTGACACTATAATAATTCTTATTATTGCTAACATGATGATCAGATTTCCAGCATTACAATCGTAGCATGCTAACAGTATTATGGCGTCTTATATACATCCAGTAGCCGCCCGAGTTCACACTAAagacaaaagtattggaacggcaaggccgattcttttgtttttgctatacactgaagacatttggttttgagatcaaaagataaatatgagatgatagatcagaatttcagctttcatttcctgatatttacgtctagatgtgttaaacaacttagaacatggcccCTTTTGTTTTAACCCACCTGTTTGTTTAAGTTTatttgacaggtgtttcttgttgctcaggtgtgtcctgttagattgattgtttaaacaattaatagctctgaatatctactttctggtttgagccctggatttcacctgtgaagactgcttttgttgttaaaaaggataaaccaacatgaagaccagagagctgactatgggagaaaagcaagccattttgaagctgagaaaataGAGAATATCTAGCTGAGCTATTCCACAAGCATTGggaatagccaatacaacaatttggaatgtcctgaaaaagaaagaaatcactggTGGACCAACAACCAcggaaaacagcagcagttgatgacagttAACGTTGTGAGAactataaagaaaaaccccaaaacaacagtcagtagCATctccaacaacctccacagggctgGGGTGAtagtatcacaatccaccgtttgaaaaaaagactttgagagcagaaatatagaggccgtACCACAAGATACTGCAAAcgtctcatcagcagtaagaatcagaaagcCAGATACAAATTCACCttgaaatacagagatgatccagaaaagttctggaaccaagattaacctctaccaaagtgaaggaaaggccaaaatgtgaagaaagaaaggatctgctcatgatccaaagcatacgagctcattggtcaagcacggtggaggtagtgtcatggcttgggcttgtatggctgcttctggacctggctcactaatctttattgatgatggaactcatgatgataggaacagaatgaattcagaggTCTACAGAAATTGGgagaacttcatcatgcagcaagacaacaagccaaaacacactgctaacacaacaaaggacttcatcagtggaaaaaaatcaccaaacttcaacccaattgagcaacATTTCACCTCCTGTAGAGAAGACCGAAGGGAGAAACCCCTCAAACcaaacaacagctgaaagaatcTGTAGTACAcacctggaaaagcatcacaaaagaagaatgcatcGGTTTGATGTCAGTGGCTCAcaggcttgatgcagttattgcaagcaaggaatATGCAACTAAATATTAAGTGCTATTTACtttatctgttccaatacttttgctcatctaaaaatCGAGTGCTCTggcacaaaaggtgccatgttctaagttgtttaacacgtctagatgtaaatatcaggaaattctgatctatcatctcatattcatcttttgatctcaaacccaaatgtctatggtgtatagcaaaaaaaaaaaaacagaattttctttgctgttccgatactttcggaggggactgtgagtgtgtgtattcgAAACAGGCTGATGTGGAAGTTAAAACTTATATGTCGCTTTgccagaaaacaaaacaacccaTGTGTTTTATACTCCAGAAAATATGGTAATCTCAGGAAAGCGCTTTTTCCCCCATTTAGCACCGTCACACAGCGCATGCTCCAGCCCTGATGTCCATATATGAATGTACTCGTATTTAAAGAGCCCTTCGTagtctctttatttatttcagaaggTTATGTGATCTGCTAGAACAGAATCCGGAAAGCTAGCTCAGATCCTGAAAGCATGCTTGTAGGAAAGCCGAAGCTCTTCTCGATCGCATGTAGAcgctcaa
>XM_034303995.1
TTGGCCGAATTCCAAACGGCTCCGAATTAGAaaagtagtgcactatgtaggctGTAGACGTCAGTTATTCCGCGCAGTACGTAGTGCGCATGTGCAGGGAGTTGTGAGGCGTTTGGGATACGGCCGGCTCAGAACCGGAAATAGCGGTTAGGGCTGTATCATGTAGTGTTACAGGGCACGGAAAGTGGATGTCAGCCGTTGCTAGGTGGATCTCTGACACTTTTAGCATCACAAAACAAGatgatttttaagaaatatgtaGCTTGAGGAAAGACGAGGACGAGATTTTGACATCTTCATCAGCAAGTTGGAATCTTTATTTACGTCTTTGGAGctgtgaTAGAGTGATGCCGGCTGCCTCGAGCTGCGACTGCCCGCACCTGGAGTGCGTTGGAGAGATCACTAAAGAGGAGCTCATCCAAAAGTCTCACgGCCAGTGCCAGGACTGCAGAGTCGGTGGGCCGAACCTCTGGGCCTGTCTGGAAAATGGCTGTGCTTATGTCGGATGCGGAGAGTCCCACGCCGACCACAGTACAGTCCACTCTCAGGAGACGCGGCACAACCTGACAGTGAATCTGACCACGCTGAGGGTTTGGTGTTACGCCTGTTCCAAGGAAGTCTTCCTGGACAGGAAGCTGGGCCCTGTTACCCCGCCCACTGGCACTGCCAAACCCATCTCACCTGTCCCGCTGCCTGGCCAGGATCCCGGAGTTCCAGGCAGCCCCACCGCTCTGAGAGTGCCACCAGCCGGAGTACCCGAGGATCTGGATATGGAGACCGAAGAAGAAGACGATCTGAGGACTAGAGGTCTGACCGGCCTGAAAAACATCGGCAACACCTGCTACATGAACGCAGCACTGCAGGCGCTGTCCAACTGtCCTCCGCTCACTCAGTTCTTCATAGACTGTGGTGGTCTGGTCCGAACAGACAAGAAGCCGGCACTGTGTAAAAGCTACCAGAAGCTGATTACAGACCTGTGGCACAAGAACAGGCCTTCCTATGTCATCCCAACAAACCTGTTCCAGGGCATCAAAGCTGTTAATCCGATGTTTCGAGGTTACTCCCAACAGGATTCTCAGGAGTTCCTACGTTGCCTGATGGACCAGCTGCACGAGGAGCTCAAGGAGCCGATAGAAGAACCCGAAGACCAGAGTCAGACTGCAGGAACGGACGAAGACGAGCCGAACGAGCCCGCCGAGCCTCACGAAGCTAACGAGGCTAACGAAGCCGAAACGCTCATCTCAGACGAGGAGAAAGCGAGCCGAGAGCGGCAGAGGGAGAAGAACCTCATCAACGAGCGGCACCGAGCCGACCTGGACAAGGACGAGGACACGGCGACCATCGTCAGCAGCCAGGGAGCCATCAAGCACAGCAAGGCCACGGACACTAATCCAGAGATCCAGATCAGCAGCAGTGGCCGGCCCCAGAGCCCGAGTGCCAGCGAGAACATCGGGTCCAAACTGTCCAGCAGCCCACCCAAATCCACCCCCATGTGGCCAAACCTCAACCCAGCTCACAAGAAAGTGAGCATGTTTGCGCCCCCGAAGAGCAAGCGGCAGAGGAAATACCGCAGCGTCATCTCCGACGTTTTCGACGGCACCATCGTCAGCTCGGTGCAGTGCCTGACCTGCGACCGGGTATCAGTGACCCTGGAGAACTTCCAGGACATTTCCCTGCCCATTCCCGGGAAAGAGGATCTAGCCAAGCTTCACTCGGCCACTCATCAGACGTCGCTGGTGAAGGCGGGTTCGTGCGGCGAGGCTTACGCTCCTCAGGGCTGGATCGCCTACGTCCTCGAGTACATCAAGAgCTGGTTCTGGGGCCCGGTGGTCACACTGCAGGACTGTCTCGCCGCCTTCTTCGCTCGAGACGAACTCAAAGgAGACAACATGTACAGCTGTGAAAAGTGCAAGAAgttgAGAAATGGAGTCAAGTTCTGCAAAGTTCAGAGTTTGCCAGAGATCTTATGCATTCACCTGAAGCGCTTCAGGCACGAGCTGATGTTCTCCACCAAGATCAACACTCACGTCTCTTTCCCACTGGACGGTTTGGACCTGCAGCCCTTCCTGGCCAAAGACAGCTCGGCCCAGACCACCACCTACGACCTGCTGTCCGTCATCTGTCACCACGGCACCGCCAGCAGTGGTCACTACGTGGCTTACTGCCGCAACGACCTGAACCAGATGTGGTACGAGTTTGACGACCAGAGCGTAACCGAAGTCTCCGAGTCCTGTGTTCAGAACGCCGAGGCCTATGTGCTCTTCTACAAGAAGAGCAGCGAGGAGGCGCAGAAAGAGAGGCGGCGAGTGACGGCTTTGTTCAACATGATGGAGCCGAGCCTGCTGCAGTTCTACGTCTCGCGCCAGTGGCTCAACAAGTTCCGGACGTTCGCCGAGCCCGGGCCCATCTCCAACCGCGACTTCCTGTGTGCACACGGAGGCGTGCCGCCCCACAAGGCTGCGTATATCGATGACCTCGTGGTCATGCTGCCCCAAAACGTCTGGGACCATCTGTACGGCAGGTATGGAGGCGGGCCAGCTGTCAACCATCTGTACGTCTGCCACACCTGCCAGCTGGAGATTGAGAAGCTGGAGAAACGGCGCAAGAGCGAGCTGGACATGTTCGTACGGCTGAACAAGGCGTTTCAGGAGGAGGAGGCCCCCGTGGTCATCTACTGCATCAGCATGCAGTGGTTCCGTGAATGGGAGGCTTTCGTCAAAGGCAAGGACAACGatcCTCCAGGACCTATCGACAACTCCAAGATCGCTGTGAATAAAAACGGCCACGTCACGCTCAAGCAAGGCGCCGATTCGGGTCAGATCTCCGAGGAGACGTGGAACTTCCTGCACTCGATCCACGGCGGCGGTCCTGTGGTGACGGTGCGACCCAGCGTGAGCCACCAGGATCCCGACGCCTCTCAGGCTGAGGAGAAGATCGAGGTGGAGACTCGCAGCTTATAGAGAAACAGGAAATCGTTCACTTTTGCACTTgcctttctctcacacactcttcattcCCTGCGTGCATTCCTTACAAGTAATAAGTTAATAAACGTTGTGAATTACGCTTCATGTTTGTATATACggcagttagttagttagttagttagttagttcgTTTAAATTGGACTGAAAATCAAATTTACACGTTTTCTCCCTTCCTCCTGTGTCGTCCTTCGGCCAGGACACATTTGTCATCTGACGTTTGCgtattttagtttaaaaattaGCTACAAAAGCACATATCAGACAACAAACATATCTTTGGTGATTGATGGAATTTTAGGGAACAGTTTCATTGTAtaaattgaatttttattttatttttttttttgatgaactATCCCTTTAAAACAGCGATAAAGTGATAATTCACACTGCTGGACacgtattaaataaaataatgcttaaGTATCAATTAGCAGCTGGACGACACCTTTCGGTGCTGCGTAATGAATTAAATtgctcacttcctgttcctgttcctgttcctgtgtgACCATTAGCAAACTAATAAAATGTGACTCTTATTGCTCCTTTAAAGCCAATTCTTACAGATCCTGTCGAGGATATGCCTGATGTTGTATATATATCTTATTCAGGTGCAGTCTAAGCTGAAGGAAAAGTGTCTTCGTGAACGACGTGTGCGATTACGAGGGGATCAAAAGCACTAAGAACCGTATTTTCCGGAATATGTGTAACCTCAGAGTTTAAGATGCTTAGAACACAAATTTGAATTTAGGTTTTGTCCCTTTAGTGTTGCCGTAACTTAGCGATTTTACTCCCTCTGTCCTAATAAAGACGTCGTTATGCATCAGCGTTTAATAACGAAGTCTTGTTCACTTTAGACGTAGATTTGTTTGACACTATAATAATTCTTATTATTGCTAACATGATGATCAGATTTCCAGCATTACAATCGTAGCATGCTAACAG

Function

symbol description
usp33 Predicted to enable cysteine-type endopeptidase activity; thiol-dependent deubiquitinase; and zinc ion binding activity. Predicted to be involved in several processes, including axon guidance; centrosome duplication; and protein deubiquitination. Predicted to act upstream of or within endocytosis and ubiquitin-dependent protein catabolic process. Predicted to be located in centrosome. Predicted to be active in cytoplasm. Orthologous to human USP33 (ubiquitin specific peptidase 33).

NR:

description
PREDICTED: neuroblast differentiation-associated protein AHNAK-like

GO:

id name namespace
GO:0006897 endocytosis biological_process
GO:0070536 protein K63-linked deubiquitination biological_process
GO:0016477 cell migration biological_process
GO:0071108 protein K48-linked deubiquitination biological_process
GO:0008277 regulation of G protein-coupled receptor signaling pathway biological_process
GO:0051298 centrosome duplication biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0007411 axon guidance biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005813 centrosome cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11848 USP20_33; ubiquitin carboxyl-terminal hydrolase 20/33

RNA

RNA id representative length rna type GC content exon number start site end site
TU86878 False 3202 TUCP 0.41 3 29148638 29152381
XM_034303995.1 True 3935 mRNA 0.52 25 29150521 29171921

Neighbor

gene id symbol gene type direction distance location
zzz3 zzz3,LOC104950552 coding downstream 1146 29131186 ~ 29147492 (-)
pigk pigk,LOC107751867,LOC107599845 coding downstream 71202 29055012 ~ 29077436 (-)
LOC113540041 dnajb4,LOC108430719,LOC107599850,LOC107681825,LOC107751861 coding downstream 230486 28911613 ~ 28918152 (-)
LOC117597036 NA coding downstream 268436 28877573 ~ 28880202 (-)
gipc2 gipc2,LOC108430720 coding downstream 287195 28842922 ~ 28861443 (-)
dipk2aa dia1a,LOC108268022,LOC108437525,LOC107681802,LOC107599840,LOC107722302,LOC107565821 coding upstream 128385 29300306 ~ 29322917 (-)
chst2a LOC108268021 coding upstream 161198 29333119 ~ 29336703 (-)
pcolce2a LOC108268019 coding upstream 187579 29359500 ~ 29371526 (-)
mfsd8l2 LOC108267997,LOC108437504 coding upstream 270194 29442115 ~ 29452793 (-)
kcnmb2 NA coding upstream 289120 29461041 ~ 29466020 (-)
G73248 NA non-coding downstream 94411 29053597 ~ 29054227 (-)
G73264 NA non-coding downstream 104668 29043760 ~ 29043970 (-)
LOC113540203 NA non-coding downstream 119447 28940662 ~ 29029191 (-)
G73243 NA non-coding downstream 160255 28986472 ~ 28988383 (-)
LOC117597038 NA non-coding downstream 251839 28892016 ~ 28896799 (-)
G73249 fubp1 non-coding upstream 16237 29188158 ~ 29189340 (-)
G73318 LOC107599861 non-coding upstream 41632 29213553 ~ 29215051 (-)
G73319 NA non-coding upstream 44349 29216270 ~ 29218158 (-)
G73327 NA non-coding upstream 101668 29273589 ~ 29320334 (-)
G73423 NA non-coding upstream 368174 29540095 ~ 29540356 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 263673 28873578 ~ 28884965 (-)
LOC117597168 NA other downstream 356809 28787614 ~ 28791829 (-)
LOC113540437 fam159a other downstream 496213 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 911833 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 912371 28236186 ~ 28236267 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 392300 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 552667 29724588 ~ 29730857 (-)
G73619 blvra other upstream 847585 30019506 ~ 30022525 (-)
LOC113540055 LOC108268301 other upstream 1569606 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 1601528 30773449 ~ 30775819 (-)

Expression


Co-expression Network