G73318 (LOC107599861)


Basic Information

Item Value
gene id G73318
gene name LOC107599861
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29213553 ~ 29215051 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU86892
GTAAAATGGGTGGCATGTTGTGATGATTATGTTCCTCTAACGGtgttatagtgttttattcctcctataaaatattatatttatgaaagAATGATATGTCAGAGAatgacattttatctgtttatagtcacttacgttatagcagctataaacttcTTTTCTCTTAACCagtattttattgctttattgctCCTGTTGACATTTTATACACAGCTTTTTGATGCCTCCTGGGTGAGTTCTGTTTCTGAAGTCTGAAGACCCGTGATGCTGACTCACTTCCTGAGACCTTTCGTTATGAAAGTGGTGAGTATTCAGAACATGAAGTACCTCTTGCAGACAGCAGGGGTAAAAGCAGCTGCTGCAGCGTAGAGGACGTGTGAGCGTGAGCACCTCCTGGCCCATGTTGTCCTGGACGTGGAGGGCGAAGGAGCGAAGCGGTCCGCAGCAGTTCCGGTTACAGCAGTCGTTCTCCTCGGCCACGAAGAAGACCTGCTGCCCGAGTGAGTTCTTCACCAGATACTTGTTGTTGGTCTCCCATCCTATAAAAACCTTCAGCCAGCTCCACTTTCTGGTGAACGAGAAGCTGGTCGATCTGGTCCCCATATAGagaacaatcacacacacacacacacacacacacacactttttaatggCGTCAGATGACACAGTGTTCACAGAAGTACACCAGAAGCTTACACGCTGTGTACACATGAACAGCTTTGAGTGAGATCCAGGACCACGCATGGTGCTGACGCTCTGCTTAGTCATCACTGATACGATCAGCTCTCATTTTCCATCTCAGCTTTTCAGACCACGGTGGCGTGCTAGTAACGTTACTAACATAGAACCTCACCTGCGTTAAGTACTCCAGCCCAGGTGGACACCCGGCCGGTCTCTGAGGAGCCGGCATCATCGCCGGAGCCTGAGGAGGAACGTAGCCTGCAAATatggtgcatttatttataaaatacaagcTAAAACACTACAGTATATACTGCAAGAATATACTATAAAAATCCTATTGTCTATATCAGAGGGTCTAAAAGTCTGAATCCACTACTGAGAGcttttcataacattaaaagtaactataaatggataaaaagtatgacatgttcattattaaatgttGTAATCGATGGCAACTTTGTGGtataagtaagtaaagtaattAACAGTAGGttttcttcatcacaccatccagttggtgattattattattattattattattattat

Function

NR:

description
PREDICTED: phospholipid scramblase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU86892 True 1240 lncRNA 0.42 2 29213553 29215051

Neighbor

gene id symbol gene type direction distance location
zzz3 zzz3,LOC104950552 coding downstream 66061 29131186 ~ 29147492 (-)
pigk pigk,LOC107751867,LOC107599845 coding downstream 136117 29055012 ~ 29077436 (-)
LOC113540041 dnajb4,LOC108430719,LOC107599850,LOC107681825,LOC107751861 coding downstream 295401 28911613 ~ 28918152 (-)
LOC117597036 NA coding downstream 333351 28877573 ~ 28880202 (-)
gipc2 gipc2,LOC108430720 coding downstream 352110 28842922 ~ 28861443 (-)
dipk2aa dia1a,LOC108268022,LOC108437525,LOC107681802,LOC107599840,LOC107722302,LOC107565821 coding upstream 85255 29300306 ~ 29322917 (-)
chst2a LOC108268021 coding upstream 118068 29333119 ~ 29336703 (-)
pcolce2a LOC108268019 coding upstream 144449 29359500 ~ 29371526 (-)
mfsd8l2 LOC108267997,LOC108437504 coding upstream 227064 29442115 ~ 29452793 (-)
kcnmb2 NA coding upstream 245990 29461041 ~ 29466020 (-)
G73247 NA non-coding downstream 17386 29128055 ~ 29196167 (-)
G73249 fubp1 non-coding downstream 24213 29188158 ~ 29189340 (-)
G73248 NA non-coding downstream 159326 29053597 ~ 29054227 (-)
G73264 NA non-coding downstream 169583 29043760 ~ 29043970 (-)
LOC113540203 NA non-coding downstream 184362 28940662 ~ 29029191 (-)
G73319 NA non-coding upstream 1219 29216270 ~ 29218158 (-)
G73327 NA non-coding upstream 58538 29273589 ~ 29320334 (-)
G73423 NA non-coding upstream 325044 29540095 ~ 29540356 (-)
G73439 NA non-coding upstream 392550 29607601 ~ 29607805 (-)
G73452 LOC108268059 non-coding upstream 456136 29671187 ~ 29674270 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 41632 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 328588 28873578 ~ 28884965 (-)
LOC117597168 NA other downstream 421724 28787614 ~ 28791829 (-)
LOC113540437 fam159a other downstream 561128 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 976748 28236724 ~ 28236805 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 349170 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 509537 29724588 ~ 29730857 (-)
G73619 blvra other upstream 804455 30019506 ~ 30022525 (-)
LOC113540055 LOC108268301 other upstream 1526476 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 1558398 30773449 ~ 30775819 (-)

Expression


Co-expression Network