G73481


Basic Information

Item Value
gene id G73481
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29778555 ~ 29780132 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU87065
TGTGTTGTGAagatgtggaacatctgtgaaccGAACACACTAAACGTTATATATGGCATccgttattatttttaaaaaaatggaaagactATGGCACAAGCATGACTCTGCACAGAGAGCATTCAGTCAGAGAAGCAAGCgcgatgctaccaccaccacgcTTTGCGGAGAATGCATGGCGTTCTCAGGGCGATGATGAGTTGTAGGAAGaagtgctgttgtaggaaagtaatcaacaacaggatggtgTAATGGGGCTGAGGTAATATTGTCACTccaaagtagattattttcctacaagtTTTTTACTCCTTTGTGAGGATAATCTAAAGTGTCCAATGATAAGGAATATCATGCTGGTTCACTACTGTGATGTATGGCATTACAGATTATCAGCATGTACTTTGATTATTGTTCACCTGCCAGCTCTGACCTTCAGTTGTTGGCCTTGTCCTTTATTAAACATCAGTGATAAATTAAGGACAATACGCTGATTATTTACATTCGACATTAACGTCGTATTTGTCATCATTCACGTCTGAAAGCCTGATTCCAAATTACTCACTAGGTCAATATTATTCTGGGAATTCCGCCTGCTTTGTCTGTGTCACAGGAAGAATGAGCGGACATGTTCTTGGCAGCAGAGCAGCCGCTCTCAGTGACTTTCAGTCTCATTTACGACATGCTCATTTGCAAATTTACTTCTGTAAGCTGTACAGAATGCAGAGAAGGCACCAGTAATGTTCATGCTATTCTTCAAAACATAGAtccaaatatacacacaccagcCTTTGCACCACAAGCCTTGAccatggtttttattttttttttccttgctgaAGAGCAAAACATGTTGTGCTTAGTCACGTcgactaagaaaaaaaaaaaaaaaaaaaggaaggacagTTCATCCAAGGCAATAAATGCATAGTTCTGCCATAGCATTGTTAAGgtcttgtttctgattggtcagaagatgtttagttttctataacagtagtaTCTgctgcaaattacaggtttataatGAATGCGCTCATGCACTTtacacagggactcgtatgTGCAAAGAGTACCAGGGAATAACTGTGAatgagctggagagatccacagctcagacgggaagctgttcacaggacaaacccagacactccacaaagctgggctttaCGGAAGATTGGCGAGCCATATGAGCTCCCGTTTGAATATTGAGACCCAACAAACGTGAGAAAAAGaccaaaatgtaactttttgaATATTGCACAAAGGTTTCTATTTGgcagaaacacaacacaacacagcactgaGAACATCtttctcctcagtgaagcatggtggtggcagcatccaCTAGACTTACTCTGAGTATTGCCCTTCTTATCTGGTCACTTACCTTCGGTGGATTCACagttctttcagtttttttactAATGGATTTATTGATGATCTGTGGGATGTTTGAAggttgggattttttttttttttttttttttaaataaccaaacCCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87065 True 1509 lncRNA 0.40 2 29778555 29780132

Neighbor

gene id symbol gene type direction distance location
cdc14aa LOC108267888,LOC108411489 coding downstream 30442 29732265 ~ 29748113 (-)
si:ch211-13f8.1 LOC108267891 coding downstream 72873 29693378 ~ 29705682 (-)
si:ch211-13f8.2 LOC108268058,LOC108437498 coding downstream 86000 29681244 ~ 29692555 (-)
LOC113539879 LOC108267234 coding downstream 111700 29629970 ~ 29666855 (-)
ripk2 ripk2,LOC107681812,LOC107715521,LOC107722215,LOC107701343 coding downstream 185728 29576698 ~ 29592827 (-)
ddr2b LOC108267138 coding upstream 16938 29797070 ~ 29812557 (-)
nos1apb LOC108267139 coding upstream 33395 29813527 ~ 29825141 (-)
rgs5b LOC108267191 coding upstream 53530 29833662 ~ 29835191 (-)
brinp3b LOC108267163 coding upstream 88459 29868591 ~ 29899526 (-)
LOC113540096 coa1,LOC108267121,LOC107600219,LOC108428892,LOC103038044 coding upstream 123612 29903744 ~ 30014565 (-)
G73444 NA non-coding downstream 12440 29765747 ~ 29766115 (-)
G73448 NA non-coding downstream 12923 29765124 ~ 29765632 (-)
G73479 NA non-coding downstream 14764 29763505 ~ 29763791 (-)
G73459 LOC108267889 non-coding downstream 64145 29713999 ~ 29714410 (-)
G73458 LOC108267889 non-coding downstream 65109 29712893 ~ 29713446 (-)
G73485 NA non-coding upstream 12080 29792212 ~ 29793644 (-)
G73492 NA non-coding upstream 66542 29846674 ~ 29846891 (-)
G73607 NA non-coding upstream 149132 29929264 ~ 29929489 (-)
G73618 NA non-coding upstream 196539 29976671 ~ 30025036 (-)
G73652 NA non-coding upstream 315658 30095790 ~ 30097973 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 47698 29724588 ~ 29730857 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other downstream 202828 29564221 ~ 29575727 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 606634 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 893590 28873578 ~ 28884965 (-)
LOC117597168 NA other downstream 986726 28787614 ~ 28791829 (-)
G73619 blvra other upstream 239374 30019506 ~ 30022525 (-)
LOC113540055 LOC108268301 other upstream 961395 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 993317 30773449 ~ 30775819 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other upstream 1466928 31247060 ~ 31277249 (-)
LOC117597010 NA other upstream 2090386 31870518 ~ 31871874 (-)

Expression


Co-expression Network