rem2 (rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122)


Basic Information

Item Value
gene id rem2
gene name rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 31247060 ~ 31277249 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU87974
agaggaagaggaggaagaggaggatgcgCGCTGGCATGTCATGTCGTGCACAGAGCTCGCGCTGGTGAAGGAGTGCCTCTGTGACCACAGGAAACCATGTCTGAGCAGGCTTATGGCTTGACTTTATCCGCTGCACCTCCACTTCGCAGAGGAAGCACACCGCTACCGATCAAGCACCTGTTAAGGCGAGAGGAAGCCGTGTCTGAGGATTATGATTGGATACCGGGGCTCGATGCTGCTGATGCTCCGCCCATCAGCAGCAGTGATGCTCAAGATGCACCTCTCCTTCTTAAGGTTCCAGAGCAAAAGTACCGCGGGCCCTGCGGATCGTCCTGTTGGGGCAGAACGGAGTGGGCAAATCGTCACTGGCCCTCTCTCTCGCTGGGCTGTCGGACAGATCACTTTCAGTAGACTCTGAAACACAAGCGAGCGaTGAAGGATATCATCGAAGGGTGACAGTAGATGATGAGGACAGCTCAATCTTGGTGTATGACAACTGGAAACAGAAGCCCACTCCAACGCCATGATGTTCGACTGCGTGTACCTGGAGCTCTCCGTCTCGCTGGATCACGGCACTAACGAGCTCCTGGAGACGGCGGTGAGGGCTGCCCGTGGCCACAGCCTGGGGCCTGGCTGGACTGAGGGATCACCCGGAGGTGGCCGCCGTGAAAGCCTTACCAGCAGGGCCAAGCGCTTCCTGTCAGGCCTGGTTCCGCGCTCACATCACGGCCGCGAGCGCATCCGTGAGCAAGAGCGACACAAAGGCAACCGAATGCTGCGGCAGAAATCTCGCTCCTGTCATGACCTCAGTGCCCTGATGTAGAGATTAAGGATTAGTTACTGCAGATAGAAAATAAAACCAGGAATCAATTTTGTCAGGTTAAATCCAGGGAAAGCtgtaataatgtttgttttggtATCATATATACGGTATGTCATACgtgtggcggtctgggaaaaccctttggctatcgctgtggctgaattctggaaaaaacaaaaacgctaGAAAAGATTTTTTCTGTCAATGATATACTCCGACAGCTTTACCTTCCCAGctgtcatcatcaaaacagagaagagcgcttacacactcagaggagaaaaagtttttaactgtttaaatgaCGTAATACAAAGTCATTAATAACAAAGTGATTGTATTTTAGCCAACAGAACCGACAAACGCAGCGAGTGATTTtatacctcaggtgatgagacaaaGATGTGGATGacgctgataatcaaagtgagaactcatttctgattggaaacttataattctttaaaattggCAGCAGTGTTGTTTTTTCACCAGTAGATCAGGCTATAAATGTAGAAATTCGCAGGTGtggcatctttcagtggaattggaatgaaagCTTTAAATGcgattttctcccttttcaatTTTGGGGGGCTTTAAAATGCTATACTTTTTCATCTTGTTTCAGATGTGtgcaaataaaacagttcagcaAAGTCTGAAAAAATGGGTTTTCCCATGCTGCCACACACATCTATAAAACGACAGGCATAGAAGTTGAGTAGAAGTTTACTGCagactttattatttttgttgtttcataAATCAATACTCaagaggaagaaggaaagaaaagaaatccttatcacacacttacacaggcAGTTGTAGTGTAGCTCCTTGAGAAGCTTTATGCTGAAATTAAGCTTGAAGTGTAAGACAGTATTATAATTAGTGCATGGACATTTTGCATATAGTAGTTGATTTCCCCTCAGAAAAGACCCTTAAAGTCTTAAAAATGGATTTTTCTGCCCTTAAGAATGTGGGgcattataaataaacacaatcttTTTAACTATGTATATATTAAGACATCTATAAAATTTCGAATTGTAGGAATTATGCGCCCTTTAATATTCGGGATGCTCCTCTCTGAATAAACAACTTTAATTCTTAAATGAACGTTTCACTCATACAGTGCATGGACACCATTTCTTTCGTTCTAAGGACATGTTAATAGATAGCTGAATGATGAAAGCAATATGATTTGCCACATGAGGTTGTGGAAATACTATAATAATTTCACTTCAGTCCTTCAGTTTGACATGTTGCATTTAGCCACTAACTTATTTGCACTAAAAGAAACagcacaggcagacagacaaatcTCTGTGAGAAACAccttttttactctctctctctctcacacactctcgctTTACCTCCAAGACTGCGAATAAATGTATGCCTGAACGACTGCTTGCACTTAAACCACATTCCACAAAGACATGGATTATAGCCATGCTCTGAGAATAACAAGCTCAtaagaaacaataaatatagATAATTGTCTCTATATATGTCTTTTTGGCTGCGTATACAGTAAGGAAGCAATACTATGGAACTCCTACGTCTTTATCCACAGTCTTACCCTGTGTTTCAATACTGTTTTAACACGCTCTTGTCAATCTTTCTGACTCGATTGACCACGTCTAGCCACTTGCAGTACAATGGAAATTGGCCGCAAGCGCAATGTAGCGCTGAACAAGTCATATTAGCTCGCTAAATAGCTACGCAAGGGCCGTATTCGGGAATCGTtgacttaagttcaaaagtaatgtaaatatttacatggggaaagttcgtcgtattcagagtcgggttacacacgtgcttaagttgattttttGGGTGTTGCATTCAGATTActaaaatcacctgcatgtagttcatgcctccaaggttgccagattttcttctttaattagACACACCAATTGATTAATTTAATAGCATCTAGACCCCcacattaaacacaagcacttgtctTTAAACCCCCCAGAAAACCGAGCTGGAGTCTATGCGCATAAACTCCACTCTCTACAGCCCACACAGAATAAATGTCGTCTGTCATGTAGTTGCCAGAGACGATGTAGTTGTCTACATTAATcctgatttaaaaatatcaagCGTTTAAAATGGTTTATTAAACAGCTTCATCAGCTGTTTCACACagctttaaatgaaaaaaattccaTCTAACGAATTTCACTTGAGCTaataatgcaaatgaaatgaagacaaaaaaatggcCCAAAGGATAATAACGAAGGGAAGTTAATCAGAGTTAACGCAACAGAAACACTGTTGAAATGCAGGGTTGGTTTGTAGTCTTTACCACATTTTTCAACTATATAAGCACTGTCATTCAATTCACTTCGAATTTAGGGTTCTCTGTGAAAATGAGACTTTAGAGCAGGGGTCATCAGTCGGTGGATGGCGGTCTGGACTGCGGATAGcaaagtatttaataataaaataatggtgTAGCAGAGCTGATAACCATATGAACAAAAATCTTGCCGTAGTTCTAGTTTTCTAACCACGAACCAGCTCAGTTCTGTAGCTGTTACAGTTTATCCAATCACGTGtctttatgtaaattatttttaatagctgaaggcagctgatcagaccagagactagctacggGGCTAGAGCTCAGAAAGGAAAGAGTTTTCACCGACTTTCATAGACCTTTCGTTTTATTTACCatctctgatctgatctgattaactgtttttaggaaaaaaaaagtcgtagacaaaaacagaatgtttaaagactgTTGGACAAAAGAAGTATGTTTATTCTCTGCGCCAAGACGTAGAGATGTGTCTCATCTCTTCAGAGTCCATGGCgttagtcaaaagtggtaagaTGAAGCACCACTATGAAAGGAAACATAACCACTTCCAATTGTTCAAATAGCTATAAACAAATtctttaatgtttaatcattaaaaGGTAACAGTCAGTCATGCtagttgcttatccagacctttgTACACAAGGAATTATACGTAACTGGACCTTTACAAACTTTAGCTGAATACCCCTGCTTTAGAGAAACAAATGGCAAACCATTTAGTACATCTCGTCCTATTGTTTTATGTCCTTACATTTAAACTCTTCCCTTTTTCTACACGATCGTACTTGAACTGAGCTCGAGGAGCATTGTTGTGGGGGCTGGCCACACACGCTTATGCAACACCAAAACGTTCTGGAAACGTTGCTCTGAAGTCAACATCGCAGTGTCATTTCATTGTCAGCTCATGCATTACTCACTGTTGATGAACGTTGCTCACAGTGTTTTGGGGGAcaaaagg
>XM_026936925.2
CGTCCAGGTGTAGTGCGCGAGCTGACGTTTGAGAGTGATCGCGCATagcctgatacacacacacacacacacacacacacacacacaataggtTCCTGTATATAGATGCCGTTTCTGCTCATCATCTCCCTTTAGAAACAGACATGCGGTAGCACATTTGCacacaaaaggaaagaaagaagaaaaaagaagaagaagggatAGAAAGGAAATTCCCACAccggaggaagaggaagaggaggaagaggaggatgcgCGCTGGCATGTCATGTCGTGCACAGAGCTCGCGCTGGTGAAGGAGTGCCTCTGTGACCACAGGAAACCATGTCTGAGCAGGCTTATGGCTTGACTTTATCCGCTGCACCTCCACTTCGCAGAGGAAGCACACCGCTACCGATCAAGCACCTGTTAAGGCGAGAGGAAGCCGTGTCTGAGGATTATGATTGGATACCGGGGCTCGATGCTGCTGATGCTCCGCCCATCAGCAGCAGTGATGCTCAAGATGCACCTCTCCTTCTTAAGGTTCCAGAGCAAAAGTACCGCGGGCTGCGGATCGTCCTGTTGGGGCAGAACGGAGTGGGCAAATCGTCACTGGCCCTCTCTCTCGCTGGGCTGTCGGACAGATCACTTTCAGTAGACTCTGAAACACAAGCGAGCGaTGAAGGATATCATCGAAGGGTGACAGTAGATGATGAGGACAGCTCAATCTTGGTGTATGACAACTGGAAACAGGAGCTCTCCACGCTACAGTGTGAGGTGTGCTTACTGGTGTTCTCGTTGACGGACCGCCGTAGTTTCCACCGTGTGTCTCAGCTGCGCTTGTTGCTGAGGGAGAGCCACCCCAACACTCCCATCATCCTCGTGGGCAACAAGAGTGACCTGGTGCGCTCCCGTGAGATCAGCACAGAGGAAGCCCACTCCAACGCCATGATGTTCGACTGCGTGTACCTGGAGCTCTCCGTCTCGCTGGATCACGGCACTAACGAGCTCCTGGAGACGGCGGTGAGGGCTGCCCGTGGCCACAGCCTGGGGCCTGGCTGGACTGAGGGATCACCCGGAGGTGGCCGCCGTGAAAGCCTTACCAGCAGGGCCAAGCGCTTCCTGTCAGGCCTGGTTCCGCGCTCACATCACGGCCGCGAGCGCATCCGTGAGCAAGAGCGACACAAAGGCAACCGAATGCTGCGGCAGAAATCTCGCTCCTGTCATGACCTCAGTGCCCTGATGTAGAGATTAAGGATTAGTTACTGCAGATAGAAAATAAAACCAGGAATCAATTTTGTCAGGTTAAATCCAGGGAAAGCtgtaataatgtttgttttggtATCATATATACGGTATGTCATACgtgtggcggtctgggaaaaccctttggctatcgctgtggctgaattctggaaaaaacaaaaacgctaGAAAAGATTTTTTCTGTCAATGATATACTCCGACAGCTTTACCTTCCCAGctgtcatcatcaaaacagagaagagcgcttacacactcagaggagaaaaagtttttaactgtttaaatgaCGTAATACAAAGTCATTAATAACAAAGTGATTGTATTTTAGCCAACAGAACCGACAAACGCAGCGAGTGATTTtatacctcaggtgatgagacaaaGATGTGGATGacgctgataatcaaagtgagaactcatttctgattggaaacttataattctttaaaattggCAGCAGTGTTGTTTTTTCACCAGTAGATCAGGCTATAAATGTAGAAATTCGCAGGTGtggcatctttcagtggaattggaatgaaagCTTTAAATGcgattttctcccttttcaatTTTGGGGGGCTTTAAAATGCTATACTTTTTCATCTTGTTTCAGATGTGtgcaaataaaacagttcagcaAAGTCTGAAAAAATGGGTTTTCCCATGCTGCCACACACATCTATAAAACGACAGGCATAGAAGTTGAGTAGAAGTTTACTGCagactttattatttttgttgtttcataAATCAATACTCaagaggaagaaggaaagaaaagaaatccttatcacacacttacacaggcAGTTGTAGTGTAGCTCCTTGAGAAGCTTTATGCTGAAATTAAGCTTGAAGTGTAAGACAGTATTATAATTAGTGCATGGACATTTTGCATATAGTAGTTGATTTCCCCTCAGAAAAGACCCTTAAAGTCTTAAAAATGGATTTTTCTGCCCTTAAGAATGTGGGgcattataaataaacacaatcttTTTAACTATGTATATATTAAGACATCTATAAAATTTCGAATTGTAGGAATTATGCGCCCTTTAATATTCGGGATGCTCCTCTCTGAATAAACAACTTTAATTCTTAAATGAACGTTTCACTCATACAGTGCATGGACACCATTTCTTTCGTTCTAAGGACATGTTAATAGATAGCTGAATGATGAAAGCAATATGATTTGCCACATGAGGTTGTGGAAATACTATAATAATTTCACTTCAGTCCTTCAGTTTGACATGTTGCATTTAGCCACTAACTTATTTGCACTAAAAGAAACagcacaggcagacagacaaatcTCTGTGAGAAACAccttttttactctctctctctctctctctctctctctctctctctcacacactctcgctTTACCTCCAAGACTGCGAATAAATGTATGCCTGAACGACTGCTTGCACTTAAACCACATTCCACAAAGACATGGATTATAGCCATGCTCTGAGAATAACAAGCTCAtaagaaacaataaatatagATAATTGTCTCTATATATGTCTTTTTGGCTGCGTATACAGTAAGGAAGCAATACTATGGAACTCCTACGTCTTTATCCACAGTCTTACCCTGTGTTTCAATACTGTTTTAACACGCTCTTGTCAATCTTTCTGACTCGATTGACCACGTCTAGCCACTTGCAGTACAATGGAAATTGGCCGCAAGCGCAATGTAGCGCTGAACAAGTCATATTAGCTCGCTAAATAGCTACGCAAGGGCCGTATTCGGGAATCGTtgacttaagttcaaaagtaatgtaaatatttacatggggaaagttcgtcgtattcagagtcgggttacacacgtgcttaagttgattttttGGGTGTTGCATTCAGATTActaaaatcacctgcatgtagttcatgcctccaaggttgccagattttcttctttaattagACACACCAATTGATTAATTTAATAGCATCTAGACCCCcacattaaacacaagcacttgtctTTAAACCCCCCAGAAAACCGAGCTGGAGTCTATGCGCATAAACTCCACTCTCTACAGCCCACACAGAATAAATGTCGTCTGTCATGTAGTTGCCAGAGACGATGTAGTTGTCTACATTAATcctgatttaaaaatatcaagCGTTTAAAATGGTTTATTAAACAGCTTCATCAGCTGTTTCACACagctttaaatgaaaaaaattccaTCTAACGAATTTCACTTGAGCTaataatgcaaatgaaatgaagacaaaaaaatggcCCAAAGGATAATAACGAAGGGAAGTTAATCAGAGTTAACGCAACAGAAACACTGTTGAAATGCAGGGTTGGTTTGTAGTCTTTACCACATTTTTCAACTATATAAGCACTGTCATTCAATTCACTTCGAATTTAGGGTTCTCTGTGAAAATGAGACTTTAGAGCAGGGGTCATCAGTCGGTGGATGGCGGTCTGGACTGCGGATAGcaaagtatttaataataaaataatggtgTAGCAGAGCTGATAACCATATGAACAAAAATCTTGCCGTAGTTCTAGTTTTCTAACCACGAACCAGCTCAGTTCTGTAGCTGTTACAGTTTATCCAATCACGTGtctttatgtaaattatttttaatagctgaaggcagctgatcagaccagagactagctacggGGCTAGAGCTCAGAAAGGAAAGAGTTTTCACCGACTTTCATAGACCTTTCGTTTTATTTACCatctctgatctgatctgattaactgtttttaggaaaaaaaaagtcgtagacaaaaacagaatgtttaaagactgTTGGACAAAAGAAGTATGTTTATTCTCTGCGCCAAGACGTAGAGATGTGTCTCATCTCTTCAGAGTCCATGGCgttagtcaaaagtggtaagaTGAAGCACCACTATGAAAGGAAACATAACCACTTCCAATTGTTCAAATAGCTATAAACAAATtctttaatgtttaatcattaaaaGGTAACAGTCAGTCATGCtagttgcttatccagacctttgTACACAAGGAATTATACGTAACTGGACCTTTACAAACTTTAGCTGAATACCCCTGCTTTAGAGAAACAAATGGCAAACCATTTAGTACATCTCGTCCTATTGTTTTATGTCCTTACATTTAAACTCTTCCCTTTTTCTACACGATCGTACTTGAACTGAGCTCGAGGAGCATTGTTGTGGGGGCTGGCCACACACGCTTATGCAACACCAAAACGTTCTGGAAACGTTGCTCTGAAGTCAACATCGCAGTGTCATTTCATTGTCAGCTCATGCATTACTCACTGTTGATGAACGTTGCTCACAGTGTTTTGGGGGAcaaaagggaaaataaagataatttgtactccttcttc

Function

symbol description
rem2 Enables calcium channel regulator activity. Acts upstream of or within dopaminergic neuron differentiation. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in eye and optic tectum. Orthologous to human REM2 (RRAD and GEM like GTPase 2).

NR:

description
PREDICTED: GTP-binding protein REM 2

GO:

id name namespace
GO:0071542 dopaminergic neuron differentiation biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU87974 False 4155 lncRNA 0.42 5 31247090 31277021
XM_026936925.2 True 4611 mRNA 0.42 6 31247060 31277249

Neighbor

gene id symbol gene type direction distance location
LOC113540512 NA coding downstream 522403 30721032 ~ 30724657 (-)
epha4b epha4b,LOC108268054,LOC108428906,LOC107694655,LOC107668971,LOC103372263 coding downstream 546015 30593706 ~ 30701045 (-)
acvr1l acvr1l,LOC108267867,LOC108428902,LOC107678695,LOC107602619,LOC107749086,LOC107588871 coding downstream 1023740 30212389 ~ 30223320 (-)
crlf1a crlf1,crlf1a,LOC108428895,LOC107602622,LOC107678692,LOC107588877,LOC107690059 coding downstream 1162199 30064050 ~ 30084861 (-)
odf3l2a LOC108267126,LOC108428861,LOC103039917 coding downstream 1190340 30050560 ~ 30056720 (-)
carmil3 carmil3,LOC108268291 coding upstream 13572 31290821 ~ 31344984 (-)
LOC113540523 LOC108267123 coding upstream 76653 31353902 ~ 31356972 (-)
LOC113540063 LOC108267709 coding upstream 83398 31360647 ~ 31364271 (-)
LOC113540461 LOC108267708,LOC107591395 coding upstream 102224 31379473 ~ 31502378 (-)
psmb5 psmb5,LOC107668975,LOC108438927,LOC107706341,LOC106569426 coding upstream 251121 31528370 ~ 31533258 (-)
G74255 NA non-coding downstream 20472 31225234 ~ 31226588 (-)
G74060 NA non-coding downstream 130624 31056485 ~ 31116436 (-)
G74047 NA non-coding downstream 215680 31030389 ~ 31031380 (-)
G73974 NA non-coding downstream 401578 30777759 ~ 30845482 (-)
LOC113540224 NA non-coding downstream 408950 30836352 ~ 30838110 (-)
G74417 NA non-coding upstream 289802 31567051 ~ 31650584 (-)
G74458 NA non-coding upstream 459043 31736292 ~ 31785757 (-)
G74479 NA non-coding upstream 467102 31744351 ~ 31745462 (-)
G74457 NA non-coding upstream 475872 31753121 ~ 31756304 (-)
LOC113540068 NA non-coding upstream 589833 31867082 ~ 31870008 (-)
ccl20l LOC100304631 other downstream 471241 30773449 ~ 30775819 (-)
LOC113540055 LOC108268301 other downstream 496092 30741527 ~ 30750968 (-)
G73619 blvra other downstream 1224535 30019506 ~ 30022525 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 1516203 29724588 ~ 29730857 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other downstream 1671333 29564221 ~ 29575727 (-)
LOC117597010 NA other upstream 593269 31870518 ~ 31871874 (-)
G74547 NA other upstream 597060 31874309 ~ 31874827 (-)
G74550 NA other upstream 602785 31880034 ~ 31880556 (-)
LOC117597011 NA other upstream 605694 31882943 ~ 31883607 (-)
LOC117597121 NA other upstream 628377 31905626 ~ 31910974 (-)

Expression


Co-expression Network