smarcd3a (smarcd3,smarcd3a,LOC103039772,LOC107599876,LOC107718026)


Basic Information

Item Value
gene id smarcd3a
gene name smarcd3,smarcd3a,LOC103039772,LOC107599876,LOC107718026
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23943853 ~ 23973123 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935829.2
TTGGgagaggagagatagagagggagagtgaaggAGGGTGGGAGCGCTCTCTTTTGGAGGAGAGGGAATGTGGAGCGGATAGCAGGGGAGGCGGACGGGGAGAAGAAGCTAGTAatacagacaacaaaagaaaaatcgGGGGGTGAAGAAAAAGGGGGCTTCTGCACAATGGCCACGGAGGATTCTGCTGGTGGCGCTCGCAAAGCCACCAAGAGTAAACTGTTCGAGTTTCTCGTCCATGGAGTGCGTCCAGGTATGACCTCAGGGGCCCGAATGCCTCATCAAGGTGCCCCTATGGGTCCACCTGGCCCCCCGTATGGAGGAACACCCCCGATTCGGCCGGGGATGCCCAACCCCACACTGGACCCAAACCGCAAACGGCCCACCACTACCCCACCGGTACAAGCCCCGTCCGTCCAGAACCGGCCTAGAAAGAAACCACTGGGATTCCAAGGAGCCAATGAGGTTTCTGCAAGACCATTGGACTTGCGAGAGGCCCAGTCTGAGCCAGCAATTGGATCCAATGCCAAGAGAAGGAAAATGGCAGACAAGATTCTCCCTCAGAGGATCCGTGAGCTGGTGCCAGAGTCGCAGGCGTACATGGACCTTTTGGCTTTTGAGCGCAAACTGGACCAAACTATTATGAGGAAGCGGGTGGATATTCAAGAGGCTCTTAAGAGACCGATGAAGCAAAAGCGGAAACTCCGACTGTACATCTCCAACACGTTTAACCCCGCTAAGCCTGATTCAGAGGACTCCGAGGGCAGCATTGCATCCTGGGAGCTAAGAGTAGAAGGCAAGCTGCTAGATGATCCTGGAAAGCAAAAGAGGAAGTTCTCTTCTTTCTTCAAGAGCTTGGTTATTGAGCTGGATAAGGACCTATATGGCCCTGATAACCACTTAGTTGAGTGGCATCGCACTCCCACAACCCAGGAGACGGATGGCTTCCAGGTGAAGAGGCCTGGAGACGTGAATGTGCGGTGCACGCTGCTCCTCATGCTCGATTACCAGCCACCCCAGTTTAAGCTGGACCCTCGGCTTGCTCGGCTGCTGGGCATCCACACACAGACCCGCTCCTGCATCATCCAGGCCCTGTGGCAGTATGTCAAGACTAACAAGCTGCAGGACTCCCACGAAAAGGAATACATTAGCTGTGACAAGTACTTCCAGCAGATCTTCGACTGCCCGCGTCTGAAGTTTAGTGAGATTCCTCAGCGGCTCACTAACCTGCTGCTGCCCCCTGACCCGATCGTGATCAACCATGTCATCAGTGTGGACCCCAATGACCACAAGAAGACAGCCTGTTATGACATAGACGTCGAGGTGGACGATCCTCTAAAGACCCAGATGAACGGTTTTCTGCTCTCAACTGCTAATCAGCAGGAGATAGCGTCACTAGACAACAAGATCCATGAGACCATTGAATCCATCAACCAGCTGAAGATCCAGAGAGATTTCATGCTCAGTTTCTCCAGAGATCCCAAGGGCTACATTCAGGACTGGATCTGTTCACAAAACCGAGACCTTAAGCTAATGACTGATGTGGTGGGAAACCCAGAGGAGGAAAGAAGAGCAGAGTTTTATAACCAGCCCTGGTCTCAAGAAGCTGTGAGTCGCTACTTTTACTGCAAGatCCAACAACGAAGACAAGAACTCGAACAGGCTTTGGCAATGCGCACCACTTAAACACGTCATCAATTTGGAGCAAAACTTACCAGCACATTTATTTGCCGAATAATCCCGGGAATTTGAATCTAGTGAAGAATCTCCAACATACTGGACAACTTTCCCGGTATCCTTGAACATTATAAAACACTACTGGCAACTGGCactatttgttatttattggaAAGTTTGTATATGGCATTAcagttcagtgttcagtttGTAAgtattatctaaaaaaaagtgataataataaattaaaaaaaaaagacttttttggAAAATTCTTACGCCACAAACCAGAGTAAAACAAAGCCAAACATTTTACTGGCTGCACAAAAATGTGAGaaacgtctttttttttttaatttgatcgAATGTTTTGTACTGTAAAATATTGTCTCTTTTGGCTAAGAATGAGTTTAAGCCTTGGATAAGAGGAAAAGAAATGTGTACTGTGAAGTTCCACTTTTTGTTTGTCAGCAGTATTtggtattagtgtgtgtgtgtatatgtgttaaCAGTACTGGATGTGTTGCGCATCACTTTACATTCTGCTTTATCTTCGTTCATGATCTACTGTGTGTCCGTGAACTGAAGCACTGTGTAAACATTTCTCTGTAGGTCATAAAAGAACGTTTACCATGACTGAGGCTTCACTAGGCTAGAACGAAGCAGATTTGGATTTGCTAGGATATGGATGTCTGCTTTCACATTTCTGTACACTTGCCTGTGAATACAGATTGAAAGCCTTTTTACTTGGGTGGTGTGAGCACATGTGAGGACCTAATGGAGAAAAACTTTAGAGGATGATACTTtgctatttttttcctgtactgTCATGATCAGTGACTTTACATATCATTTTTTCAATGGCTTTAGAATATGGCCTCAATGTTGTCAGAGATCTGTTAGAATCACACCAGTGCATGTTGCATGAGAACATACAGGCCTGTTTTTAGGAAACAGCTTAGCATGAATCAGTCAGCATTGTAACTTTGTTGCCTTAAAAGCTTACTGAGGATGCAGATAAAAAA
>XM_026935830.2
ACGCATGCGCGTTGTCTTGTGCCGCACCGCGCGCCGCTCTCCTCCACACTGGGCCTTCTTCATCAGCATCCCACCATCCACAGCTTTAACTCCCTGAGGATCAGgatcaggaggaggaggagaaggaggaggaggaggagaagaagggaGCTCCCGACAATCCGTCTGAAAGCGAGGAGAAGTTGTCGGAGACGGACACCAGACcagagagtgtgtttgagtgtgtgcatCTCAAAGTTGCCGCGATGGAAAGAAAGCGTCCAGGTATGACCTCAGGGGCCCGAATGCCTCATCAAGGTGCCCCTATGGGTCCACCTGGCCCCCCGTATGGAGGAACACCCCCGATTCGGCCGGGGATGCCCAACCCCACACTGGACCCAAACCGCAAACGGCCCACCACTACCCCACCGGTACAAGCCCCGTCCGTCCAGAACCGGCCTAGAAAGAAACCACTGGGATTCCAAGGAGCCAATGAGGTTTCTGCAAGACCATTGGACTTGCGAGAGGCCCAGTCTGAGCCAGCAATTGGATCCAATGCCAAGAGAAGGAAAATGGCAGACAAGATTCTCCCTCAGAGGATCCGTGAGCTGGTGCCAGAGTCGCAGGCGTACATGGACCTTTTGGCTTTTGAGCGCAAACTGGACCAAACTATTATGAGGAAGCGGGTGGATATTCAAGAGGCTCTTAAGAGACCGATGAAGCAAAAGCGGAAACTCCGACTGTACATCTCCAACACGTTTAACCCCGCTAAGCCTGATTCAGAGGACTCCGAGGGCAGCATTGCATCCTGGGAGCTAAGAGTAGAAGGCAAGCTGCTAGATGATCCTGGAAAGCAAAAGAGGAAGTTCTCTTCTTTCTTCAAGAGCTTGGTTATTGAGCTGGATAAGGACCTATATGGCCCTGATAACCACTTAGTTGAGTGGCATCGCACTCCCACAACCCAGGAGACGGATGGCTTCCAGGTGAAGAGGCCTGGAGACGTGAATGTGCGGTGCACGCTGCTCCTCATGCTCGATTACCAGCCACCCCAGTTTAAGCTGGACCCTCGGCTTGCTCGGCTGCTGGGCATCCACACACAGACCCGCTCCTGCATCATCCAGGCCCTGTGGCAGTATGTCAAGACTAACAAGCTGCAGGACTCCCACGAAAAGGAATACATTAGCTGTGACAAGTACTTCCAGCAGATCTTCGACTGCCCGCGTCTGAAGTTTAGTGAGATTCCTCAGCGGCTCACTAACCTGCTGCTGCCCCCTGACCCGATCGTGATCAACCATGTCATCAGTGTGGACCCCAATGACCACAAGAAGACAGCCTGTTATGACATAGACGTCGAGGTGGACGATCCTCTAAAGACCCAGATGAACGGTTTTCTGCTCTCAACTGCTAATCAGCAGGAGATAGCGTCACTAGACAACAAGATCCATGAGACCATTGAATCCATCAACCAGCTGAAGATCCAGAGAGATTTCATGCTCAGTTTCTCCAGAGATCCCAAGGGCTACATTCAGGACTGGATCTGTTCACAAAACCGAGACCTTAAGCTAATGACTGATGTGGTGGGAAACCCAGAGGAGGAAAGAAGAGCAGAGTTTTATAACCAGCCCTGGTCTCAAGAAGCTGTGAGTCGCTACTTTTACTGCAAGatCCAACAACGAAGACAAGAACTCGAACAGGCTTTGGCAATGCGCACCACTTAAACACGTCATCAATTTGGAGCAAAACTTACCAGCACATTTATTTGCCGAATAATCCCGGGAATTTGAATCTAGTGAAGAATCTCCAACATACTGGACAACTTTCCCGGTATCCTTGAACATTATAAAACACTACTGGCAACTGGCactatttgttatttattggaAAGTTTGTATATGGCATTAcagttcagtgttcagtttGTAAgtattatctaaaaaaaagtgataataataaattaaaaaaaaaagacttttttggAAAATTCTTACGCCACAAACCAGAGTAAAACAAAGCCAAACATTTTACTGGCTGCACAAAAATGTGAGaaacgtctttttttttttaatttgatcgAATGTTTTGTACTGTAAAATATTGTCTCTTTTGGCTAAGAATGAGTTTAAGCCTTGGATAAGAGGAAAAGAAATGTGTACTGTGAAGTTCCACTTTTTGTTTGTCAGCAGTATTtggtattagtgtgtgtgtgtatatgtgttaaCAGTACTGGATGTGTTGCGCATCACTTTACATTCTGCTTTATCTTCGTTCATGATCTACTGTGTGTCCGTGAACTGAAGCACTGTGTAAACATTTCTCTGTAGGTCATAAAAGAACGTTTACCATGACTGAGGCTTCACTAGGCTAGAACGAAGCAGATTTGGATTTGCTAGGATATGGATGTCTGCTTTCACATTTCTGTACACTTGCCTGTGAATACAGATTGAAAGCCTTTTTACTTGGGTGGTGTGAGCACATGTGAGGACCTAATGGAGAAAAACTTTAGAGGATGATACTTtgctatttttttcctgtactgTCATGATCAGTGACTTTACATATCATTTTTTCAATGGCTTTAGAATATGGCCTCAATGTTGTCAGAGATCTGTTAGAATCACACCAGTGCATGTTGCATGAGAACATACAGGCCTGTTTTTAGGAAACAGCTTAGCATGAATCAGTCAGCATTGTAACTTTGTTGCCTTAAAAGCTTACTGAGGATGCAGATAAAAAA
>XM_026935831.2
TTGGgagaggagagatagagagggagagtgaaggAGGGTGGGAGCGCTCTCTTTTGGAGGAGAGGGAATGTGGAGCGGATAGCAGGGGAGGCGGACGGGGAGAAGAAGCTAGTAatacagacaacaaaagaaaaatcgGGGGGTGAAGAAAAAGGGGGCTTCTGCACAATGGCCACGGAGGATTCTGCTGGTGGCGCTCGCAAAGCCACCAAGAGTAAACTGTTCGAGTTTCTCGTCCATGGAGTGCGTCCAGGTATGACCTCAGGGGCCCGAATGCCTCATCAAGGTGCCCCTATGGGTCCACCTGGCCCCCCGTATGGAGGAACACCCCCGATTCGGCCGGGGATGCCCAACCCCACACTGGACCCAAACCGCAAACGGCCCACCACTACCCCACCGGTACAAGCCCCGTCCGTCCAGAACCGGCCTAGAAATGCCAAGAGAAGGAAAATGGCAGACAAGATTCTCCCTCAGAGGATCCGTGAGCTGGTGCCAGAGTCGCAGGCGTACATGGACCTTTTGGCTTTTGAGCGCAAACTGGACCAAACTATTATGAGGAAGCGGGTGGATATTCAAGAGGCTCTTAAGAGACCGATGAAGCAAAAGCGGAAACTCCGACTGTACATCTCCAACACGTTTAACCCCGCTAAGCCTGATTCAGAGGACTCCGAGGGCAGCATTGCATCCTGGGAGCTAAGAGTAGAAGGCAAGCTGCTAGATGATCCTGGAAAGCAAAAGAGGAAGTTCTCTTCTTTCTTCAAGAGCTTGGTTATTGAGCTGGATAAGGACCTATATGGCCCTGATAACCACTTAGTTGAGTGGCATCGCACTCCCACAACCCAGGAGACGGATGGCTTCCAGGTGAAGAGGCCTGGAGACGTGAATGTGCGGTGCACGCTGCTCCTCATGCTCGATTACCAGCCACCCCAGTTTAAGCTGGACCCTCGGCTTGCTCGGCTGCTGGGCATCCACACACAGACCCGCTCCTGCATCATCCAGGCCCTGTGGCAGTATGTCAAGACTAACAAGCTGCAGGACTCCCACGAAAAGGAATACATTAGCTGTGACAAGTACTTCCAGCAGATCTTCGACTGCCCGCGTCTGAAGTTTAGTGAGATTCCTCAGCGGCTCACTAACCTGCTGCTGCCCCCTGACCCGATCGTGATCAACCATGTCATCAGTGTGGACCCCAATGACCACAAGAAGACAGCCTGTTATGACATAGACGTCGAGGTGGACGATCCTCTAAAGACCCAGATGAACGGTTTTCTGCTCTCAACTGCTAATCAGCAGGAGATAGCGTCACTAGACAACAAGATCCATGAGACCATTGAATCCATCAACCAGCTGAAGATCCAGAGAGATTTCATGCTCAGTTTCTCCAGAGATCCCAAGGGCTACATTCAGGACTGGATCTGTTCACAAAACCGAGACCTTAAGCTAATGACTGATGTGGTGGGAAACCCAGAGGAGGAAAGAAGAGCAGAGTTTTATAACCAGCCCTGGTCTCAAGAAGCTGTGAGTCGCTACTTTTACTGCAAGatCCAACAACGAAGACAAGAACTCGAACAGGCTTTGGCAATGCGCACCACTTAAACACGTCATCAATTTGGAGCAAAACTTACCAGCACATTTATTTGCCGAATAATCCCGGGAATTTGAATCTAGTGAAGAATCTCCAACATACTGGACAACTTTCCCGGTATCCTTGAACATTATAAAACACTACTGGCAACTGGCactatttgttatttattggaAAGTTTGTATATGGCATTAcagttcagtgttcagtttGTAAgtattatctaaaaaaaagtgataataataaattaaaaaaaaaagacttttttggAAAATTCTTACGCCACAAACCAGAGTAAAACAAAGCCAAACATTTTACTGGCTGCACAAAAATGTGAGaaacgtctttttttttttaatttgatcgAATGTTTTGTACTGTAAAATATTGTCTCTTTTGGCTAAGAATGAGTTTAAGCCTTGGATAAGAGGAAAAGAAATGTGTACTGTGAAGTTCCACTTTTTGTTTGTCAGCAGTATTtggtattagtgtgtgtgtgtatatgtgttaaCAGTACTGGATGTGTTGCGCATCACTTTACATTCTGCTTTATCTTCGTTCATGATCTACTGTGTGTCCGTGAACTGAAGCACTGTGTAAACATTTCTCTGTAGGTCATAAAAGAACGTTTACCATGACTGAGGCTTCACTAGGCTAGAACGAAGCAGATTTGGATTTGCTAGGATATGGATGTCTGCTTTCACATTTCTGTACACTTGCCTGTGAATACAGATTGAAAGCCTTTTTACTTGGGTGGTGTGAGCACATGTGAGGACCTAATGGAGAAAAACTTTAGAGGATGATACTTtgctatttttttcctgtactgTCATGATCAGTGACTTTACATATCATTTTTTCAATGGCTTTAGAATATGGCCTCAATGTTGTCAGAGATCTGTTAGAATCACACCAGTGCATGTTGCATGAGAACATACAGGCCTGTTTTTAGGAAACAGCTTAGCATGAATCAGTCAGCATTGTAACTTTGTTGCCTTAAAAGCTTACTGAGGATGCAGATAAAAAA

Function

symbol description
smarcd3a Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of SWI/SNF complex. Predicted to be active in nucleus. Orthologous to human SMARCD3 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3).
smarcd3 Enables nuclear receptor binding activity; nuclear receptor coactivator activity; and signaling receptor binding activity. Involved in several processes, including chromatin organization; positive regulation of neuroblast proliferation; and regulation of transcription, DNA-templated. Located in chromatin; cytoplasm; and nucleoplasm. Part of SWI/SNF complex and npBAF complex.

NR:

description
PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 isoform X2

GO: NA

KEGG:

id description
K11650 SMARCD; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935829.2 False 2702 mRNA 0.46 14 23943853 23969059
XM_026935830.2 True 2713 mRNA 0.47 14 23943853 23973123
XM_026935831.2 False 2612 mRNA 0.46 13 23943853 23969059

Neighbor

gene id symbol gene type direction distance location
abcf2a abcf2,abcf2a,LOC107599875,LOC107657436,LOC107709809,LOC107556971 coding downstream 1016 23935330 ~ 23942837 (-)
faim2a LOC108413298 coding downstream 8752 23925080 ~ 23935101 (-)
ttc19 ttc19 coding downstream 24547 23907159 ~ 23919306 (-)
slc4a2a slc4a2,LOC108413474 coding downstream 43946 23859872 ~ 23899907 (-)
ubtfl ubtfl,LOC108267581,LOC107718032 coding downstream 85467 23845044 ~ 23858386 (-)
tmub1 tmub1,LOC105023792,LOC106568619 coding upstream 1624 23974747 ~ 23982005 (-)
fastk fastk,LOC107599878,LOC107701011,LOC107557009,LOC107657442,LOC107718024 coding upstream 14681 23987804 ~ 24001864 (-)
LOC113540038 NA coding upstream 34565 24007688 ~ 24009864 (-)
puf60a puf60a,LOC108267407,LOC108413493,LOC107657443,LOC107718021,LOC107599879 coding upstream 55178 24028301 ~ 24041383 (-)
LOC113540746 NA coding upstream 63595 24036718 ~ 24036854 (-)
LOC117597086 NA non-coding downstream 11618 23931333 ~ 23932235 (-)
G69916 NA non-coding downstream 21315 23922106 ~ 23922538 (-)
G69691 NA non-coding downstream 291987 23651051 ~ 23651866 (-)
G69649 NA non-coding downstream 349309 23594331 ~ 23594544 (-)
LOC113540115 NA non-coding downstream 489632 23453233 ~ 23454221 (-)
G70025 NA non-coding upstream 165170 24138293 ~ 24138492 (-)
G70026 NA non-coding upstream 172455 24145578 ~ 24145784 (-)
G70027 NA non-coding upstream 172767 24145890 ~ 24146241 (-)
G70044 NA non-coding upstream 205908 24179031 ~ 24179864 (-)
G70540 NA non-coding upstream 899507 24872630 ~ 24872833 (-)
LOC117597117 NA other downstream 411837 23531238 ~ 23532016 (-)
LOC113540013 NA other downstream 426183 23516930 ~ 23517670 (-)
LOC113540114 LOC108267227 other downstream 427494 23515699 ~ 23516359 (-)
LOC117597116 NA other downstream 428918 23514374 ~ 23514935 (-)
LOC113540012 NA other downstream 429814 23513456 ~ 23514039 (-)
G70255 rnf220 other upstream 331251 24304374 ~ 24304926 (-)
ccdc24 ccdc24 other upstream 592618 24565741 ~ 24586048 (-)
ltb4r2b NA other upstream 2398798 26371921 ~ 26376408 (-)
G71596 NA other upstream 2498957 26472080 ~ 26551030 (-)
G71832 NA other upstream 3123479 27096602 ~ 27100858 (-)

Expression


Co-expression Network