tmub1 (tmub1,LOC105023792,LOC106568619)


Basic Information

Item Value
gene id tmub1
gene name tmub1,LOC105023792,LOC106568619
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23974747 ~ 23982005 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935833.2
ttttattttgacgtGCGAAGCGTTTTTTAACCGGAAGTGATGATTTATGGAAATACGACCAATCCATCCgcaaaatatcaggaaatataaaagtaaaacgGAGTAAATGCTGTACTGTCATGAGATGTGATATGTCAACAGTGCCTAATTCGAAGTTGCCTTAGTCCAGGACACAGCCGCCCAGGATGGCTCTGATTGAGGGCGTGGGCGATGAGGTCACTCTGCTCTTCGGAGTTGTGTTCCTCTTGCTCATCCTCGTCCTGGCCTGGGCCTCCACACACACGGCTGAGCCGCCTGAGCACCTTGTCCCATCCAGCCCAGGCTCCGTCACCGCGGCAGAGCCAGAGAGCCAAGAGCCTCACCCTCCTGGTGACATTACCTCACCACCTCGCAGCCCAAGGGAAGATGATAAGACTGAGGCAGGAGCGGAGAGAGGAGCTGAGGGACATGAGAGCAGTGCAGAGGCTGCAGGAGGAGAAAGCCTGTTAGGGGCAGACGGTCTGAGACACAGAGACGTACCGGGACCTTCACTCAGCACGCAGCCACCAGCCAGTGCCTCAAGCACCTCACAGGCGTCCACTTCTGAAGATGTGCCCAATAACACGGAGAGAAACATGGTACTGAGGCTGAAGTTTCTGAATGACACCGAGAGAATAGCACAGGTCAACCCTGACGACACCATTGGTTACATTAAaagGACCTACTTTGCTGGTCAGGAGCACCAGGTGCGTCTGATCTACCAGGGCCAGCTCCTCCAGGACGATGCCCAGACTCTGGCCTCCCTTAACCTCGCCGATAACTGCGTCCTGCACTGCCACATCTCGCAGCACGCCACGCGGGCAGTGCCTGCAGGCGCTCGCGCCGCCGACCAGGTGCACGTGGCGCTGAACGTGGGCAGCCTGATGGTGCCTCTGTTCGTGCTCATGCTCTCCGTGCTCTGGTACTTCCAGTTTCAGTACCGCCAGTTCTTCACCGCTCCTGCCACCGCCTCTCTTGTGGGCATTAccattttctttagttttgtcgcGTTTGGGGTGTACCGCCGTTAATTACGAGAGCTTCACCTGACGCATACACTTaccctacatacacacatacacataccagCACCACTGTACATTGCTTCTGGGATCTCTGGACTCTCGCGGGTTTGTTGAAGGCCATGATTTCAGAAAAGTCTTATTTTCTTTACTATAGTCAGTTACTTCTGCAAGTTTATGCTTGTGTTACACAGTAATGTGctctatatttaatttttagttttttaatatttagaaatGCTCATTGTGCCtatcctaatttttttttttctctcatttttggCTTTGCAGGCTGCCAGTGTGTAGCTGGTGCTTGCTTATGGGAGGGTTTGGTAGTCACATGACTGTTCAAACTTTCAGGCAGGTtaatctgtctctgtctgtctgtctcacactgttACAGAGTAGAGCAGACAGCGCTGCTGATATATGTCAGGACTATTGAAGTACTTTGTGTAAAAAATGGATCTTGAAACAAAGACATAATCTATTAaatcattcttttattta
>XM_034303202.1
TTTTTGTTTGCGAGTagcagctagctaacattaatgaCCAGCTGCTGTGGAATTGTCCACTTGCTAGTTTAGCTGTAGCGTGTAATGGAGCTGGTGTTGTGACATGTAGCAGAGGATCTTACACAGTGCCTAATTCGAAGTTGCCTTAGTCCAGGACACAGCCGCCCAGGATGGCTCTGATTGAGGGCGTGGGCGATGAGGTCACTCTGCTCTTCGGAGTTGTGTTCCTCTTGCTCATCCTCGTCCTGGCCTGGGCCTCCACACACACGGCTGAGCCGCCTGAGCACCTTGTCCCATCCAGCCCAGGCTCCGTCACCGCGGCAGAGCCAGAGAGCCAAGAGCCTCACCCTCCTGGTGACATTACCTCACCACCTCGCAGCCCAAGGGAAGATGATAAGACTGAGGCAGGAGCGGAGAGAGGAGCTGAGGGACATGAGAGCAGTGCAGAGGCTGCAGGAGGAGAAAGCCTGTTAGGGGCAGACGGTCTGAGACACAGAGACGTACCGGGACCTTCACTCAGCACGCAGCCACCAGCCAGTGCCTCAAGCACCTCACAGGCGTCCACTTCTGAAGATGTGCCCAATAACACGGAGAGAAACATGGTACTGAGGCTGAAGTTTCTGAATGACACCGAGAGAATAGCACAGGTCAACCCTGACGACACCATTGGTTACATTAAaagGACCTACTTTGCTGGTCAGGAGCACCAGGTGCGTCTGATCTACCAGGGCCAGCTCCTCCAGGACGATGCCCAGACTCTGGCCTCCCTTAACCTCGCCGATAACTGCGTCCTGCACTGCCACATCTCGCAGCACGCCACGCGGGCAGTGCCTGCAGGCGCTCGCGCCGCCGACCAGGTGCACGTGGCGCTGAACGTGGGCAGCCTGATGGTGCCTCTGTTCGTGCTCATGCTCTCCGTGCTCTGGTACTTCCAGTTTCAGTACCGCCAGTTCTTCACCGCTCCTGCCACCGCCTCTCTTGTGGGCATTAccattttctttagttttgtcgcGTTTGGGGTGTACCGCCGTTAATTACGAGAGCTTCACCTGACGCATACACTTaccctacatacacacatacacataccagCACCACTGTACATTGCTTCTGGGATCTCTGGACTCTCGCGGGTTTGTTGAAGGCCATGATTTCAGAAAAGTCTTATTTTCTTTACTATAGTCAGTTACTTCTGCAAGTTTATGCTTGTGTTACACAGTAATGTGctctatatttaatttttagttttttaatatttagaaatGCTCATTGTGCCtatcctaatttttttttttctctcatttttggCTTTGCAGGCTGCCAGTGTGTAGCTGGTGCTTGCTTATGGGAGGGTTTGGTAGTCACATGACTGTTCAAACTTTCAGGCAGGTtaatctgtctctgtctgtctgtctcacactgttACAGAGTAGAGCAGACAGCGCTGCTGATATATGTCAGGACTATTGAAGTACTTTGTGTAAAAAATGGATCTTGAAACAAAGACATAATCTATTAaatcattcttttattta

Function

symbol description
tmub1 Predicted to be involved in ubiquitin-dependent ERAD pathway. Predicted to be located in cytoplasm; membrane; and nucleus. Predicted to be integral component of membrane. Orthologous to human TMUB1 (transmembrane and ubiquitin like domain containing 1).

NR:

description
transmembrane and ubiquitin-like domain-containing protein 1

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K23340 TMUB; transmembrane and ubiquitin-like domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935833.2 True 1550 mRNA 0.50 3 23974747 23982005
XM_034303202.1 False 1535 mRNA 0.51 3 23974747 23981798

Neighbor

gene id symbol gene type direction distance location
smarcd3a smarcd3,smarcd3a,LOC103039772,LOC107599876,LOC107718026 coding downstream 1624 23943853 ~ 23973123 (-)
abcf2a abcf2,abcf2a,LOC107599875,LOC107657436,LOC107709809,LOC107556971 coding downstream 31910 23935330 ~ 23942837 (-)
faim2a LOC108413298 coding downstream 39646 23925080 ~ 23935101 (-)
ttc19 ttc19 coding downstream 55441 23907159 ~ 23919306 (-)
slc4a2a slc4a2,LOC108413474 coding downstream 74840 23859872 ~ 23899907 (-)
fastk fastk,LOC107599878,LOC107701011,LOC107557009,LOC107657442,LOC107718024 coding upstream 5799 23987804 ~ 24001864 (-)
LOC113540038 NA coding upstream 25683 24007688 ~ 24009864 (-)
puf60a puf60a,LOC108267407,LOC108413493,LOC107657443,LOC107718021,LOC107599879 coding upstream 46296 24028301 ~ 24041383 (-)
LOC113540746 NA coding upstream 54713 24036718 ~ 24036854 (-)
nrbp2a nrbp2a,nrbp2,LOC108267406,LOC108413492,LOC107733885,LOC107599881,LOC107657444 coding upstream 63729 24045734 ~ 24084282 (-)
LOC117597086 NA non-coding downstream 42512 23931333 ~ 23932235 (-)
G69916 NA non-coding downstream 52209 23922106 ~ 23922538 (-)
G69691 NA non-coding downstream 322881 23651051 ~ 23651866 (-)
G69649 NA non-coding downstream 380203 23594331 ~ 23594544 (-)
LOC113540115 NA non-coding downstream 520526 23453233 ~ 23454221 (-)
G70025 NA non-coding upstream 156288 24138293 ~ 24138492 (-)
G70026 NA non-coding upstream 163573 24145578 ~ 24145784 (-)
G70027 NA non-coding upstream 163885 24145890 ~ 24146241 (-)
G70044 NA non-coding upstream 197026 24179031 ~ 24179864 (-)
G70540 NA non-coding upstream 890625 24872630 ~ 24872833 (-)
LOC117597117 NA other downstream 442731 23531238 ~ 23532016 (-)
LOC113540013 NA other downstream 457077 23516930 ~ 23517670 (-)
LOC113540114 LOC108267227 other downstream 458388 23515699 ~ 23516359 (-)
LOC117597116 NA other downstream 459812 23514374 ~ 23514935 (-)
LOC113540012 NA other downstream 460708 23513456 ~ 23514039 (-)
G70255 rnf220 other upstream 322369 24304374 ~ 24304926 (-)
ccdc24 ccdc24 other upstream 583736 24565741 ~ 24586048 (-)
ltb4r2b NA other upstream 2389916 26371921 ~ 26376408 (-)
G71596 NA other upstream 2490075 26472080 ~ 26551030 (-)
G71832 NA other upstream 3114597 27096602 ~ 27100858 (-)

Expression


Co-expression Network