fastkd3 (fastkd3)


Basic Information

Item Value
gene id fastkd3
gene name fastkd3
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21480615 ~ 21485813 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935849.2
TAAGCTCCGCCCACCATAGTATAGTTGAACCAATAGGAATTCAACATCCAGCACATGCGTACATTGCACAGCGATTCCAGAATATGGCAAGATAGCACGCTGAGTCACACAGCTACAACGGCTGTTAATCATTCTGGTGAAGGATGTCATAACGCTCTTTCATGGCTCTGAAAGTGGTGCGGAGGCTGCACATGCTGAGGCAAGCGGCTCGTCCCCATCTGCTCTCTCCCACcactctgaatgtgtgtgtcagacaaCATGTGTGCGCTCCAGGCTTTCTCACCTTGTCTCAGGGCTGCCGTCATTCTCTCTCTGGGAAAGAAGGAAAGCTGCAAAAAAGGCAGCTGTGCATCACAACCCGCGAGCCTCTGTTTCTTGTAGCCGGATCCATCCGGCTTCCCCGTGACCCCTCTACAGGAGGAGCTCTCACCTCTCTGTTGCATGGCCTGAGCTCTGATGAGGAACGTGCCTTCAAAGATCGCCTTTTCTCCTGCATGACTTCCCAAAAAGTGCTTCACCTTGTGCACTCCACGCCACGTCTCTCAAGTGCAGGTGCTGTTGCTGTTCTCAACCGACTGGCTGATCTGGAGCAGGATGGAGCCAGAGGACTTAGGGAGCCTGAGGTGCTGCTGTCTGATCCGGCTTTGAATAAGATGTGTCTGAGGTTACAGGAAGAAGCTGGTGAGCTAGAAGACGAGGTGGTGGTAAGAGCTCTGCTGGGTTGTACGCGTCTTTATCTAGACCCACAAAGTCGCTTGGTGATGAGATTGATGTCCGAGAGCCAGGTACGGCTAAACACAGGCCACTTGAGCATTGAGACTCTCTGTGAGTTAGTGCAAGCACTTTTCTCAGTAGATGGGCCTGATGGTGGCATCCTACAGCAGGCTATGAAGCAGATCCAGAACAAAGATCCAGCTCATTGGAATCCAAGTGAACTGACCTCTGTCTATAAAATGCTAGCTGCAGGGTTGAATGAGGGTGGACGTTACCAGGAAttgctgaatgaaatgaacacTCGAGCACTCAGGCTTGCCCCAAGAATGGACCCTGTAACAATCAGCGAAACATTAGGAGCTCTTGTGAAGCTGGGCCAAACTCAGGCACTCCCACTGGTGATTGCTTTGTGCAAACAGACTGTGCGTCATGTGCCAAACTTTGCGGATACAGATCTGTCGATTGTACTGTCTGCACTTATGCACTATGGACACAGCGATCACTTTCTCATTGAGGCTCTGGAACGCCATGTACCCAAAATAGCCTTTACAGCTCATCCTGAGACAGTAACCAGGGTAATGCAATATTTTGGGCGGCGGCGCATTTTTTCTCCCCCCGTGTTTGATGCAGTGGCCGAAAGCTTTGTGTACAGGGCAGATGAGTACACCACGGAACAGATATCTCGGCAGATAGTGGCACTGGGAGTAGTGGGATATTTACCTCAGGAGGCTGGTCGACTTTTCCGAAAGGTGGAGTCTGTCTTGAATGCACGTTTTTCGCACTTCCAGCCTCGAACTCTGCTTGAGTTGCTGCACGCTTGCACTCTTCTACAGAGATTTCCACTCAACTTTGTCTCAAAGGTCTTCAGCCCATTCTTCCTACAGCAGCTTCAGGAGGGCAGTGTAATGGATCAGGTGGTGCTGGCTCAGCTTACGCAGCTCTACATGACAATGAAACTGGAATGTCCATTCTATCGGGGTCCACAATTTTTACCCAAGCTGCGAGTGAAGTCATTTCTGTCTCCTGGCTCTTCCTTGGAAAGCATGGTGGACGCTCATCTCTATAATGGGGTGAAGAATGGGCTAGTGGATTTGCTAGGGGATCGAACTTACTTTGCTTCCAGAGTCCTTACACCATACTGTTACACACTTGATGTGGAGATAAAACTGGATGAAGACGGCTATGTCTTGCCTGCCAGCCATGTTGAGGAAGTATATAAAAGAATTGCTGTTTGTATTGATGGGCCAAAGCGATTTGCTGCTAATGCCAGACAGCTTCTGGGGAAGGAAGCTATCAAACAACGACACCTAAAGATTCTGGGATATGAAGTTGTTCAGattCCCTATTACGAGTTTGAAAACCTTAAGGACAAGGTCAACACAGTCGAGTACCTGCACAAGAAGATTTTCCCTCACACATACCGACTCAGCTGGTGATCACTAGTTTCCACATGCAGCAGGTTTCATGCCAGCCTCATTCCCTCGAACATATGCAGACTACTCTGATACTAGACTCACAAAACAGCCTTTGTTCACGCCCTGTCAAATATATTCAgaagataaacagatagatcAGCATTACATGTTGAGGAAGCTAATGTCTTGTACTGCTGTTTTTTAATGATGTCCTTGTTTATAGTCtctaatgtatttttttaaactgagagTTTCAAGTACtatataaattatttgtttaaataaaggaaaatgaccatggtgcttttaaaa
>XM_026935851.2
ttttaaaatgtcgaATTCATCTAAATGTGGCTGGAGACCTATCTAGGGTTTTTAGCTAAGATGGGTCATTTGTAACTGCTAATTGGATAACATTAAGCTCGGTAGACACATCCACTTCCGCCTGCACTAGACCCTAGTGAAGGATGTCATAACGCTCTTTCATGGCTCTGAAAGTGGTGCGGAGGCTGCACATGCTGAGGCAAGCGGCTCGTCCCCATCTGCTCTCTCCCACcactctgaatgtgtgtgtcagacaaCATGTGTGCGCTCCAGGCTTTCTCACCTTGTCTCAGGGCTGCCGTCATTCTCTCTCTGGGAAAGAAGGAAAGCTGCAAAAAAGGCAGCTGTGCATCACAACCCGCGAGCCTCTGTTTCTTGTAGCCGGATCCATCCGGCTTCCCCGTGACCCCTCTACAGGAGGAGCTCTCACCTCTCTGTTGCATGGCCTGAGCTCTGATGAGGAACGTGCCTTCAAAGATCGCCTTTTCTCCTGCATGACTTCCCAAAAAGTGCTTCACCTTGTGCACTCCACGCCACGTCTCTCAAGTGCAGGTGCTGTTGCTGTTCTCAACCGACTGGCTGATCTGGAGCAGGATGGAGCCAGAGGACTTAGGGAGCCTGAGGTGCTGCTGTCTGATCCGGCTTTGAATAAGATGTGTCTGAGGTTACAGGAAGAAGCTGGTGAGCTAGAAGACGAGGTGGTGGTAAGAGCTCTGCTGGGTTGTACGCGTCTTTATCTAGACCCACAAAGTCGCTTGGTGATGAGATTGATGTCCGAGAGCCAGGTACGGCTAAACACAGGCCACTTGAGCATTGAGACTCTCTGTGAGTTAGTGCAAGCACTTTTCTCAGTAGATGGGCCTGATGGTGGCATCCTACAGCAGGCTATGAAGCAGATCCAGAACAAAGATCCAGCTCATTGGAATCCAAGTGAACTGACCTCTGTCTATAAAATGCTAGCTGCAGGGTTGAATGAGGGTGGACGTTACCAGGAAttgctgaatgaaatgaacacTCGAGCACTCAGGCTTGCCCCAAGAATGGACCCTGTAACAATCAGCGAAACATTAGGAGCTCTTGTGAAGCTGGGCCAAACTCAGGCACTCCCACTGGTGATTGCTTTGTGCAAACAGACTGTGCGTCATGTGCCAAACTTTGCGGATACAGATCTGTCGATTGTACTGTCTGCACTTATGCACTATGGACACAGCGATCACTTTCTCATTGAGGCTCTGGAACGCCATGTACCCAAAATAGCCTTTACAGCTCATCCTGAGACAGTAACCAGGGTAATGCAATATTTTGGGCGGCGGCGCATTTTTTCTCCCCCCGTGTTTGATGCAGTGGCCGAAAGCTTTGTGTACAGGGCAGATGAGTACACCACGGAACAGATATCTCGGCAGATAGTGGCACTGGGAGTAGTGGGATATTTACCTCAGGAGGCTGGTCGACTTTTCCGAAAGGTGGAGTCTGTCTTGAATGCACGTTTTTCGCACTTCCAGCCTCGAACTCTGCTTGAGTTGCTGCACGCTTGCACTCTTCTACAGAGATTTCCACTCAACTTTGTCTCAAAGGTCTTCAGCCCATTCTTCCTACAGCAGCTTCAGGAGGGCAGTGTAATGGATCAGGTGGTGCTGGCTCAGCTTACGCAGCTCTACATGACAATGAAACTGGAATGTCCATTCTATCGGGGTCCACAATTTTTACCCAAGCTGCGAGTGAAGTCATTTCTGTCTCCTGGCTCTTCCTTGGAAAGCATGGTGGACGCTCATCTCTATAATGGGGTGAAGAATGGGCTAGTGGATTTGCTAGGGGATCGAACTTACTTTGCTTCCAGAGTCCTTACACCATACTGTTACACACTTGATGTGGAGATAAAACTGGATGAAGACGGCTATGTCTTGCCTGCCAGCCATGTTGAGGAAGTATATAAAAGAATTGCTGTTTGTATTGATGGGCCAAAGCGATTTGCTGCTAATGCCAGACAGCTTCTGGGGAAGGAAGCTATCAAACAACGACACCTAAAGATTCTGGGATATGAAGTTGTTCAGattCCCTATTACGAGTTTGAAAACCTTAAGGACAAGGTCAACACAGTCGAGTACCTGCACAAGAAGATTTTCCCTCACACATACCGACTCAGCTGGTGATCACTAGTTTCCACATGCAGCAGGTTTCATGCCAGCCTCATTCCCTCGAACATATGCAGACTACTCTGATACTAGACTCACAAAACAGCCTTTGTTCACGCCCTGTCAAATATATTCAgaagataaacagatagatcAGCATTACATGTTGAGGAAGCTAATGTCTTGTACTGCTGTTTTTTAATGATGTCCTTGTTTATAGTCtctaatgtatttttttaaactgagagTTTCAAGTACtatataaattatttgtttaaataaaggaaaatgaccatggtgcttttaaaa

Function

symbol description
fastkd3 Predicted to enable RNA binding activity. Predicted to be involved in mitochondrial RNA processing and regulation of mitochondrial mRNA stability. Predicted to be active in mitochondrial matrix and ribonucleoprotein granule. Is expressed in female organism. Orthologous to human FASTKD3 (FAST kinase domains 3).

NR:

description
FAST kinase domain-containing protein 3, mitochondrial-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935849.2 True 2441 mRNA 0.48 7 21480615 21485813
XM_026935851.2 False 2441 mRNA 0.47 7 21480615 21485666

Neighbor

gene id symbol gene type direction distance location
LOC113540027 rgs20 coding downstream 50035 21427185 ~ 21430580 (-)
trnaa-ugc NA coding downstream 62376 21418168 ~ 21418239 (-)
mrpl15 mrpl15 coding downstream 62787 21413861 ~ 21417828 (-)
sox32 LOC108267240,LOC100698545 coding downstream 79347 21399555 ~ 21401268 (-)
sox17 LOC108267806 coding downstream 100656 21376395 ~ 21379959 (-)
myl12.1 LOC108267514,LOC101069867,LOC108436131,LOC103377455,LOC101484951 coding upstream 2374 21488187 ~ 21492336 (-)
emilin2b LOC108267875 coding upstream 68713 21554526 ~ 21580543 (-)
smchd1 smchd1 coding upstream 96409 21582222 ~ 21623632 (-)
adcyap1a LOC108268182 coding upstream 244382 21730195 ~ 21735758 (-)
tyms tyms coding upstream 263022 21748835 ~ 21757727 (-)
G68577 NA non-coding downstream 4839 21474587 ~ 21475776 (-)
G68520 NA non-coding downstream 7583 21472819 ~ 21473032 (-)
G68519 NA non-coding downstream 8776 21471632 ~ 21471839 (-)
G68495 NA non-coding downstream 72408 21407111 ~ 21408207 (-)
G68466 plag1 non-coding downstream 159469 21320818 ~ 21321146 (-)
G68585 NA non-coding upstream 11119 21496932 ~ 21501433 (-)
G68740 mrc1 non-coding upstream 342460 21828273 ~ 21828833 (-)
G68741 NA non-coding upstream 344263 21830076 ~ 21830642 (-)
G68743 NA non-coding upstream 349409 21835222 ~ 21835426 (-)
G68744 NA non-coding upstream 349957 21835770 ~ 21835995 (-)
LOC113539989 LOC108436138 other downstream 109605 21354619 ~ 21371010 (-)
G68462 NA other downstream 151365 21326046 ~ 21329250 (-)
chchd7 chchd7 other downstream 166718 21304692 ~ 21313897 (-)
znf16l LOC108268318 other downstream 655095 20778538 ~ 20825520 (-)
snrpf snrpf,LOC106609479,LOC107738052 other downstream 1514764 19962582 ~ 19965851 (-)
G68760 NA other upstream 448713 21934526 ~ 21935169 (-)
LOC113540019 LOC108268143 other upstream 1143802 22629615 ~ 22636088 (-)
lrrcc1 lrrcc1 other upstream 1806235 23292048 ~ 23306934 (-)
retreg1 fam134b other upstream 1845203 23331016 ~ 23346573 (-)
LOC117597073 LOC108267227,LOC108267226 other upstream 1994152 23479965 ~ 23483850 (-)

Expression


Co-expression Network