emilin2b (LOC108267875)


Basic Information

Item Value
gene id emilin2b
gene name LOC108267875
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21554526 ~ 21580543 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935855.2
TGTGCACTTTCAGTGCTTGGGCCCTAAATAGTCTTATCTGACATGTTTACTTCCAGTTAGATTTTCAAAATTAGTCTTAATGGATTAAATCTTTGATTTTCACAggttggttatttatttatttactttccacCAACTCTGTCTTGAACTGCTTGAGTGGCATGCTTGGGGACATTTGTAGAGACAGTAATTACTCTCTAGTGGGTGATTTGGTTTAAATCAGTTCACAGATCAGCAGAAATTTCTGCATCCCTTTGCCCTTTTGCTCAGTATTAAGTGGTATATTGGGCTGTTGTGATGGAGCCTCCTGGTGACTTCccttcttttaataaaaataatgcatagGAACAGGATCCTAGTGGTGAATGAGTCTGATATAACAGCATAATTCATTCctagatgaaaataaaaagaacttCTTCTCAGTTTTTGTAGAAAAGCGCATCGTCTCCTTGCTGCACATCTTATTAAAGCTGTGGCCATGACTTAAAGATCTCGTTCCCATGTGTTGATGAGCTGTGAACTGCCACTCGTTGTTTTGATGAAGAAGGGATCCCACCAGCTTTGTTGTCACTTTATTTGGATGGATTATAAATGAACTGCATTTCGTGGAGTTTGTTATCTAATGTTGACCAGAAGGATGTCTAATTGCGCATGCGCACATAGAAATGACTCCACAGTGGCTGCAGACTGATGAATCTAATTAATGAAGTCGTGGTTTTATGTGAAACTCAGATGGAACATTTTAactgcacacagagagagagagagagagagagagagagagagagagagatttgggTGGATTGTGTGGGGAGAATTGGGGATCATGGGAGCTGGACAgaagcagagtgtgtgttaatgctgcAGTAAAACCTGCGGGGGTGGAGAGCTTAAACATCTGtaccactcactcacacacactctcacacacacacagagcaacagtCAGCCgcacacaccaccaccagctTGGACTTTTCTCTCCTACTAACTTACAGGCTGTGTtaagatgaagtgtgtgtgtgtttgctacaTGCTGCCGTCTGCAGTTATTCTCATGCTGACTTTTTCATTAAGCTGCGGGACTCCGTCGATATACAGTTTATTCCAAGGCGCCCCGTATTCCAGCTCGAGCCCGAAACAACGCAACAAAAACTGGTGTGCCTTCGTAGTGCACAAGAACGTGACATGCGCTGTGCTGGGAATGACAGAAAGTGTGGAGTCCAACAATGCACCCTGCCCTGCACATCAGCCCCATTGTACTCAAACCGGAATatACCGCGTTCACACAAGACCAACATACAAGGTTGGCTACAAGCAGGTGACTGAGCTGGAGTGGAGGTGTTGCCCAGGTTACCGTGGTTATGACTGCATGGAGTTCAAGGATGCTCTGTCACCTTCTCAAGTTCTCCAGGAACCACAACCAGATCTGCCATCTGTCCACAAACCACAACAGAGTGTGCTCGGACCAGATGTTTCTTCTGGTGCCCATCCTTGGACACAACCTGGGCAAAGTGGACAAATCAGGCACCCTTGGACTGAGGGTGGAGAGTCTGGAAGACAGGAGGGTCAACATGATAGTCGTCGAGTTGGAGAGTTAGAAGAGGAAGTACAGCGTCTTTCTCAAACAGTCCTTGACATGCAGGCTGCCATGACTACTGCCAATGCTAACTTGCGTCTAGATCTGCAAGAAGATGCAAGCAAGATAATCCTGAACCTACTTGGCCATCTGCGACAACCACAGGATGCACTAACTGGAGGCACTGAGAGCATTGTGCTGCCCTCAGACTTAACAATTTCTCCAGTTCCTGATGAGCTTCAGAATCAGGTCACCCACCTTTCCAACACAAtcagcaccaacaccaacaccattcAGGGCCTGGAAGCTAAGCTCCAGCAGATTGAAGGCCAGATGAACCAGCTAAAAGAGGCAGCCAGTGGTACCCCGATTCCACTCCCTTCCTCTGCCTTGGCCACTGAGTGCCCATGCCAAGCTTACATTGATGAAAAACTTGAAGCTCTCCGTGTGGAGCTGATGGAAGGAATGGACATTAAGATGGCTGATTTGAAGAACTCCTGTGACTACAAAGTGGAGTCAGTCAAAGAGCAGTGTGAGGAACAGGAGAACTCCTACCTAAGTCTTGTTGAGCTCCTTGAATCCAAAGAGGCTGACCTGCGCCAGGAAATCCAGGACCTGAGACACCTTGTTTCAAATAGCACTTCTAAAGGTTTGGAGGTTGCACAGTTTCAAGATGAGATCCAGAGTCTGAAGAATGTGCATCAGAGCTTGGCTAGTGCTGTAAATGCAACAAACAAGCAACAGAAGGCTTTAGAGGAGGCACTGAACACAAGGTTTAGCCTAGCGGAAAAGAGTGCAGAAAAGCACTGCCTCAAACTTGAGGAAAAGTTAAGAAGTGAGCAGGCAAAGCAACAGGAGGCACAGAACAAAACTCTGGAGAGCAAGATCAGTGCAGCTCTACAGGTCTTTGGAGACATGCAAATGCACACCATACCAACAGATAGCCAAAATATATTAGAGATGGAAAAACAGACGCAGAGTCTGAAGGGTGAGGTGAGCTCTCTTATGCAGCAGGTTACACAGTTGGAGGGCTTAGTCCGAATTCTCAATGAGTCCATAAGTCATCAAAGTCATATGGACGGTCTGTATAACAAACTAGGTGAACTGGAGGAAGCTTGTGGGAGGAGCCAAGAATCAGCCAAAAAAGTGGAGGAGATGTTGTCTGGAATGGATGGACGGGTGGCCAATGTTGAACGGGTCTGTGGCAGATTGGAGCCAATGTCAGACAGTCTTAACAGAATTAAAGATGGACTCAACAAACATGTCAATGGCCTCTGGAACTGTGTCCGAAAGCTCAACAGCACTGTCCTCACTCACTCTACAGACATCAGCATACTGAGAGAAAATACACACTCCACAGTGGGCGAGCAGCATGGAACCACCGACATGCCGCTGTATACAGGTCCAGGTGCTCGTTCTGGTATGGAGGACTCTAGTGTTCTCATGGAGGAAGCTGCTCCAGTTTTAGAGTCTGGAGAAGCAGGGCCACCTGGAACCAAGCTTTCATCACATCCCCCTCAGGGCAGCAGTGGCAGTAAGACACCTGTTAAGGGCTATGCTTCAACTCCAGGCTTTTCTCCATCATCCCCAGTCTCTGTTACAGCTCATATCCTTTCAGGTCCTATGAGTGTAAGTGTTCCTGTGTCCTTTTCGGCTGGTCTGACCCTCTTCCCATTTTCTGAAGAGGTCGGCATCATCCGCTTCAACAGAGTGCTGCTGAATGATGGAGGCCACTATGACCCACATACAGGTGTGTTCACTGTGCCCACTAATGGCCGATACCTGTTGAGTGTCGTGATAATGGCCCAGAAAGGAGAACGAGTGGAAGCAGTCCTCTCAGTGGCCAATCGCAGCATCCAGAAGCTCGACACGGCTGGAGCAGAGGGTGTGGCCTCTACAGGGTGTCTCTGCGGAGGCTCTGCCTCTGCCAGCCTTGTCCTTGATCTTAGACAAGGTCAGAGGGTGGGGGTCGTAAAGACATCAGGAACTCTGGCGATTTCAGCATCCTCCGAGGTTCTTTCCACATTTAGTGGAGTTCTGCTTTATCCCTTGTCAGCTGAAAGATAACACGAAGCTAAGAGAATGCATCATATAAGTCTGACTTCATTCTTGGAGTGTCATATAAATGCACAAAGCAAGTAGAGTTGCCAATAATAATGCATCAAGGTAGTCAACAGATTTTAGGGTCATATTTTAAAGGGGCTAAATGTCAATAAATATgttcatgtttaatgttaatgttaaatatgttataCAACatactgtccactttaataggaacacctgtacacctgctcatttatgcagttatccaatcagccaatcattt

Function

NR:

description
EMILIN-2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935855.2 True 3911 mRNA 0.46 8 21554526 21580543

Neighbor

gene id symbol gene type direction distance location
myl12.1 LOC108267514,LOC101069867,LOC108436131,LOC103377455,LOC101484951 coding downstream 62190 21488187 ~ 21492336 (-)
fastkd3 fastkd3 coding downstream 68713 21480615 ~ 21485813 (-)
LOC113540027 rgs20 coding downstream 123946 21427185 ~ 21430580 (-)
trnaa-ugc NA coding downstream 136287 21418168 ~ 21418239 (-)
mrpl15 mrpl15 coding downstream 136698 21413861 ~ 21417828 (-)
smchd1 smchd1 coding upstream 1679 21582222 ~ 21623632 (-)
adcyap1a LOC108268182 coding upstream 149652 21730195 ~ 21735758 (-)
tyms tyms coding upstream 168292 21748835 ~ 21757727 (-)
hacd1 hacd1,LOC107702201,LOC107571282,LOC107568855 coding upstream 197333 21777876 ~ 21785375 (-)
nsun6 nsun6 coding upstream 336670 21917213 ~ 21933593 (-)
G68585 NA non-coding downstream 53093 21496932 ~ 21501433 (-)
G68577 NA non-coding downstream 78750 21474587 ~ 21475776 (-)
G68520 NA non-coding downstream 81494 21472819 ~ 21473032 (-)
G68519 NA non-coding downstream 82687 21471632 ~ 21471839 (-)
G68495 NA non-coding downstream 146319 21407111 ~ 21408207 (-)
G68740 mrc1 non-coding upstream 247730 21828273 ~ 21828833 (-)
G68741 NA non-coding upstream 249533 21830076 ~ 21830642 (-)
G68743 NA non-coding upstream 254679 21835222 ~ 21835426 (-)
G68744 NA non-coding upstream 255227 21835770 ~ 21835995 (-)
LOC117597088 NA non-coding upstream 259938 21840481 ~ 21843581 (-)
LOC113539989 LOC108436138 other downstream 183516 21354619 ~ 21371010 (-)
G68462 NA other downstream 225276 21326046 ~ 21329250 (-)
chchd7 chchd7 other downstream 240629 21304692 ~ 21313897 (-)
znf16l LOC108268318 other downstream 729006 20778538 ~ 20825520 (-)
snrpf snrpf,LOC106609479,LOC107738052 other downstream 1588675 19962582 ~ 19965851 (-)
G68760 NA other upstream 353983 21934526 ~ 21935169 (-)
LOC113540019 LOC108268143 other upstream 1049072 22629615 ~ 22636088 (-)
lrrcc1 lrrcc1 other upstream 1711505 23292048 ~ 23306934 (-)
retreg1 fam134b other upstream 1750473 23331016 ~ 23346573 (-)
LOC117597073 LOC108267227,LOC108267226 other upstream 1899422 23479965 ~ 23483850 (-)

Expression


Co-expression Network