rwdd (rwdd4,rwdd,LOC107658349,LOC107721653,LOC107661961,LOC107757904)


Basic Information

Item Value
gene id rwdd
gene name rwdd4,rwdd,LOC107658349,LOC107721653,LOC107661961,LOC107757904
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14676443 ~ 14680843 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935900.2
GCTGCTCACTGATCAGCTCTAACTCTGTGGTGCTGCGGCCGGAGTAGCGCCTGACAGCTAATAAAACAGCCGATCAGCATGAGTTGTTCAATCTGGTTGTATAAACCTTGCTATAGTTATAGATTATCTAAATAGGGTATTAGGTTTGATAATTAGACTGAAGCGAGTAGACTGGcaaactgataaataaaacatgactgctAACGAAGAGCAGGAGATGGAGTTGGAAGCTCTGAGGTCAATTTATGAAGGGGATGATTGCTTCAAAGAGCTGAGTCCCATCTCCTTCCAGTTCAGGATCGGAGACCTTAACGAGTCAAAATCATTCCTGCTGGATGTCTCATGGCCAGAGACGTATCCTGAAACCGCACCTCTTATATCCTTAGATGCCTTTTTCAACAACAGAATCTCCCCAGAGACCAAGCAGGTAATAATCTCCAAGATGCACGAGCAGGTGGAGGCGAACCTGGGCGGTGCCATGATGTACACTCTGTTTGAGTGGGCCAAAGAGAACCAGGAGATGCTGATGGAGAATCACCAGCCTGTAGTGTCTGCTGTGACCCTGACTTCTAACAGCGATGTAAACAGTCCCGTCTCCGTCCCtaagaaaaaggagaagaaagaacAGCTCACAAAGgcacagaaaaggaaaatgataGGAAGAACCGATAACAAAGGTGAACTGCCCAGAGGTTGGAACTGGGTTGATGTTATCAAGCATCTGAGCAAAACAGGAGGAAAAGAGGACGGCTAAAGAAACGGCTCTTGAACATCACATATTGAAGGAGAgcctgatggactgatggagaaagaaagtCTACCGGGActtgtttttaaagaaagttgaaATGAACCATGATTTGGATGAACTGGTGAAGCCGTTGTTTGTTTGTGATGCTGAGGCACATGAGACGAGCATAAAATATCCTCTGCCAAAATAATACCTCCAGACTAGATTCACAGAAGTGACCGCAACAACGAGCACATGCTGTGTAAACAAGAACGCAGTGAAGTGTTTCAGTGTGTACTGAGGGCAGACTCGCCTCCTGCGTCTTCACTACCCCAGGTTACAGGTCAACTAAGCAACCGATTGATTAGTATTAAACACTCTGTGTGGACAAAATGGCAACATTGACAGTTTATAGAGCTTTGTGGTTTGAGCAGGTGAACCTGAGTTTGTATTTGTACCAGTTTTTAGCctgttttttctcctttctgtaaTTTATTGTGCATATTTTTTGACACAATATAACAATCTTATGGAAGGTTTAA

Function

symbol description
rwdd Is expressed in tail bud; ventral mesenchyme; and ventral mesoderm. Orthologous to human RWDD4 (RWD domain containing 4).
rwdd4 Orthologous to human RWDD4 (RWD domain containing 4).

NR:

description
PREDICTED: RWD domain-containing protein 4 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935900.2 True 1272 mRNA 0.44 8 14676443 14680843

Neighbor

gene id symbol gene type direction distance location
rell1 rell1 coding downstream 2070 14648948 ~ 14674373 (-)
pcxb pcxb,LOC108267638,LOC108428573,LOC107721657,LOC107661964,LOC107583287,LOC107661088 coding downstream 172614 14298897 ~ 14503829 (-)
plcb3 plcb3,LOC108267602,LOC108428576 coding downstream 456155 14157436 ~ 14220288 (-)
cct7 cct7,LOC107697251,LOC107721663,LOC107691460,LOC107583281,LOC107744273 coding downstream 589462 14079705 ~ 14086981 (-)
LOC113539907 paip2b,LOC103027680,LOC108428580,LOC107721669,LOC108426126 coding downstream 622408 14041951 ~ 14054035 (-)
trnae-cuc_13 NA coding upstream 53813 14734656 ~ 14734727 (-)
lrch4 LOC108267880,LOC108428567 coding upstream 93155 14773998 ~ 14809362 (-)
pcolceb pcolce2,pcolceb,LOC108428564,LOC107684948,LOC107750313,LOC107711558,LOC107557504 coding upstream 150921 14831764 ~ 14840438 (-)
per1b per1b,LOC108428562,LOC107711564,LOC107557521,LOC107677837,LOC107596478 coding upstream 160630 14841473 ~ 14874552 (-)
dthd1 dthd1 coding upstream 194851 14875694 ~ 14893155 (-)
LOC117597192 NA non-coding downstream 43690 14622036 ~ 14632753 (-)
G64461 NA non-coding downstream 380744 14295494 ~ 14295699 (-)
G64440 NA non-coding downstream 422680 14250611 ~ 14253763 (-)
G64434 NA non-coding downstream 445615 14178574 ~ 14230828 (-)
G64291 NA non-coding downstream 635155 14040666 ~ 14041288 (-)
G64860 NA non-coding upstream 181081 14861924 ~ 14862199 (-)
G64929 NA non-coding upstream 286364 14967207 ~ 14968539 (-)
G64964 NA non-coding upstream 520455 15201298 ~ 15201545 (-)
G65253 NA non-coding upstream 1225251 15906094 ~ 15960367 (-)
G65260 NA non-coding upstream 1243611 15924454 ~ 15925161 (-)
G64436 NA other downstream 432762 14232809 ~ 14243681 (-)
zgc:194312 LOC108267841 other downstream 1235923 13436056 ~ 13440520 (-)
acap1 acap1,LOC107731905,LOC107683535,LOC107595305,LOC107675497 other downstream 1367965 13285999 ~ 13308478 (-)
tmem256 tmem256,LOC107659713,LOC107564775,LOC107560291 other downstream 2186881 12484723 ~ 12489562 (-)
LOC113539775 NA other downstream 2398774 12272218 ~ 12277669 (-)
tbc1d19 tbc1d19,LOC107660707 other upstream 1198628 15879471 ~ 15904355 (-)
smim20 NA other upstream 1292736 15973579 ~ 15991985 (-)
acox3 acox3 other upstream 1373685 16054528 ~ 16071692 (-)
tnfsf12 tnfsf12 other upstream 1738321 16419164 ~ 16426624 (-)
leap2 LOC100304644 other upstream 1911719 16592562 ~ 16594505 (-)

Expression


Co-expression Network