fxr2 (fxr2,LOC108267464,LOC108434865,LOC107750766,LOC107753958)


Basic Information

Item Value
gene id fxr2
gene name fxr2,LOC108267464,LOC108434865,LOC107750766,LOC107753958
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12227421 ~ 12242773 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935927.2
TTTTCACTCGGACGGCGCGCGTGCGAGGGGAGGTCGGGCAACGGGGCTGAGAGGAGTTGCCGGGCGATAGGAGGATTTGAAGCTAGCTGTACGACGCTTTGAGGCGATTCGTAATTACGCCAtaactcacactcacactggcCCGTAAACATAAGCAGTAAGACTTACTTGCTGTCTTACTTAGCTAGTAGCCCGGCAACCGAGGGAGGAGGTGTTCGTGAGAGATAATTAGCGACCATTAGCTGTTTGCTAACATCGCCTGAGACATTAGCCGACAGCCTGCATCCTGACCCGAGCAGCTAGCTGCATTAGCCGGACCGGCGCGGCTCCTCTGCCCAGACAACACAACCCCTCTCCCTCCACACCGAAACGCTGGAAATCCGCAAGCGGCCGGAGACGGGCGAAGCGCCGGCGAAGCTGGGGCTGTTAGCGGAGCCGCACAGTGGAGGAGGACCCGCGGAGAGGCACAGCGGCGGGGACGCAGCGGCCGCCATGGACGGGCTGCCGGTGGAGGTGCGCGGCTCCAACGGGGCCTTCTACAAGGCGTTCATCAAAGATGTCCATGAAGACTCCCTCACGATAGTTTTTGAGAACAActGGCAACCAGAGAGACAGCTGCCATTCAGCGATGTGAGGTTGCCACCCCCATCCGACTACCACAAGGACATCGGCGAAGGAGAGGAAGTGGAGGTGTACTCTCGAGCGAACGAACAGGAACCTTGCGGCTGGTGGCTGGCGAGGGTGAGGATGATGAAGGGCGAGTTCTATGTGATCGAGTATGCTGCGTGTGATGCCACATACAACGAAATTGTCACATCAGAAAGAATCCGGCCTGTCAACCCCAACAGCCCTTCAACTCGCAACTCCTTCTACAAAACCACCATTGCTGTGCCCGTGGACCTCAGAGAAATCTGTTTAACTGACAACATCCACAAAGACTTCAGGAAAGCAGTCGGAGCCAACTGCGTCTTCTACAACACTTCATCACATGAACTGGTTGTACTGTCCACGAACGACTCCACAGTGAAGCGTGCCTCCCTTCTGAGTGACATGCACTTCCGCAGCATTCGCACCAAGCTCTTTCTCATGTCCCGCAACGAGGAGGCCACCAAACACCTGGagacgAGTAAACAGCTGGCATCAGCTTATCAGGAGGAGGTACGGGTGCGTGAGGATCTGATGGGTTTGGCCATCGGCTCCCACGGTGCCAACATCCAGCAGGCTCGCAAGGTTCCTGGGGTTACTGCCATTGAGCTTGAGGAGGAGAGCTGCACCTTCAGGATCTATGGAGAGACCCCAGAAGCTGTGAAACAGGCTAGAGTATATCTGGAGTTTAAAGAAGACTCCTTCCAGGTACCCAGGAATCTTGTAGGCAAAGTTATTGGGAAAAGTGGCAAAATCATCCAGGAAATTGTGGATAAGTCTGGTGTGGTGCGTGTTCGGATCGAAGGCGACAACGACAAAAAGCTGCCCAGAGAGGAGGGTATGGTTCCTTTCATCTTTGTAGGAACCAAAGAAAACATCAGTAATGCCCAAGCTTTGCTGGAGTACCATGTGGCCTACCTGCAGGAGGTGGAACAGTTACGTCTGGAGCGGGtgcagattgatgagcagcttCGTCAGATCGGTGTTGGTTACCGTGCAGCCCCAAACCGCACAGGTGCACCTGGAGCCAGTGATCGTGAGAGGGGATACCAGACTGATGAGAGCAGCAACTCTCTACAGACCTCCCGCACGTACGGCGGACGAGGCCGCGGGCGCAAGTCCAACAACGCATACTCTGGTTATGGAACAAACTCCGAGATGTCCAATGCATCTGAGTCGGAGGATCTGGCTGAGCGGGATCCTAGGCCCCGGGGAGTGGGAGGTGAGGAGAGGGGCTCCCGGAGAGGAGGCCGTGGCCGAGGATCCAGCACTGGAAGAGGCCGTGGAGGCCCAGGATCCCGCAGCTCGAACACAATCAGCTCAGTGCTAAAGGACCCTGACAGTAACCCCTACTCTCTGCTGGAGGGTGAAGGTGATCTGGGCGGAGACACTGATGCCAGCGAGAGCATGGGTGGCAGTGACCGCCGTAGACGTTCCCGCCGTCGCCGCAATGACCAGGAGCCCAGTGTGATTGACGCCGCCAATGAGTCAGATGGCCAGGCAGCTGCTAGTGAGAATGGGCTGGAAGATGAAAGCAAACCCCAGAGGCGCAACAGAAGCCGCCGTCGCCGCAATCGTGCCACCCGACCCGAGGGGGGCTCTGCCAGCCGTGACAGACAGCCAGTTACCGTGGCCGACTTCATCTCTCGTGCAGAATCTCAGAGCCGACAGAACCTTCCagtgaagaaagaagaaatgcaaCATGCCTCCCAGCCTAAGGAGAATGGGACTAGTGTGAAGAAGGAAGAGCATACCCCGTCCAAGCGTTCCCCTAGCAATGGTGTGGCATCATCTGGGGAGGCTCTGACCCTGGTGAACGGTGTTTCCTAAATGGAAAATGCAAAACGTCAGCTCACCACTCAAGACCATTGTCTAGAGCAAGACACTACAGCGATCTGTCCCTGCTTGCATTTACGTAAACCTTTAAACAGACGAGTGAAAATTGACTAAAAATCTTGAATTCATGAGATCAAGGagaaaaagatataaaaaaaaaaaatgacaaacgcATCTACTTAAACACTTTAACGGTGTATGTTTATCCTATCTATCAGTACTTAGTGCTTATGTAAGAGAAGCTTGCCAAAAAAGAGCTGGTGGATATGCTTCGAAAATCTGACGTAACTGAACACAGGACGTGactatatgtttttatttttggagagacggttttcttttttgtttgtcacTGTTGTCGtcgttttgtttgtttttcttcactggTGTGGGATTGGTCACATTCCCAAACAGATGCATCTCTGAAACAGTGTTAGAGGTGAGGGGAGGAGCTAGCCAAGAGATTGGGGGATGTGGGCGGAGCCTCGCATGTGACTGGCAGGTGAGGCTAAGGTACTCTAAGATTAAggttgtgtgtgtagggggaAAGAAAAGACATTGTGccttgaatttgaaaaaaaaaaaacttgagcatttttgtttttgtttgtggaa

Function

symbol description
fxr2 Predicted to enable mRNA 3'-UTR binding activity; protein homodimerization activity; and translation regulator activity. Predicted to be involved in several processes, including positive regulation of response to DNA damage stimulus; regulation of filopodium assembly; and regulation of gene expression. Predicted to act upstream of or within regulation of translation. Predicted to be located in cytoplasm. Predicted to be part of polysome. Predicted to be active in several cellular components, including dendrite; growth cone; and postsynaptic density. Is expressed in mesoderm; musculature system; and somite. Orthologous to human FXR2 (FMR1 autosomal homolog 2).

NR:

description
PREDICTED: fragile X mental retardation syndrome-related protein 2 isoform X1

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K15516 FMR; fragile X mental retardation protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935927.2 True 3096 mRNA 0.53 18 12227421 12242773

Neighbor

gene id symbol gene type direction distance location
ponzr6 LOC108267463 coding downstream 5482 12212987 ~ 12221939 (-)
rbm4.3 rbm4.3,rbm4b,LOC108267461,LOC107576930,LOC106577685 coding downstream 28069 12195517 ~ 12199352 (-)
LOC113540082 LOC108267460 coding downstream 32738 12190822 ~ 12194683 (-)
rbm4.1 LOC108267459,LOC106608592 coding downstream 37974 12185524 ~ 12189447 (-)
sf1 sf1,LOC107753954,LOC107691964,LOC107562691,LOC107588130 coding downstream 45159 12170525 ~ 12182262 (-)
ugt5g1 LOC108268336 coding upstream 10472 12253245 ~ 12256515 (-)
LOC113539944 NA coding upstream 17963 12260736 ~ 12263489 (-)
ponzr4 ponzr4,LOC107572169,LOC107753991,LOC107659716,LOC107572567,LOC108267307,LOC108434828,LOC103036765 coding upstream 21208 12263981 ~ 12265953 (-)
LOC113540514 LOC108267264 coding upstream 24664 12267437 ~ 12269217 (-)
LOC113539774 LOC108268321 coding upstream 35916 12278689 ~ 12284886 (-)
G63174 LOC108268320,LOC103041464,LOC108410411,LOC105029413,LOC107562848,LOC107691962,LOC106578044 non-coding downstream 104411 12067332 ~ 12123010 (-)
G63062 NA non-coding downstream 223102 12004007 ~ 12004319 (-)
G63058 NA non-coding downstream 254474 11972711 ~ 11972947 (-)
G63031 NA non-coding downstream 329320 11897845 ~ 11898101 (-)
G63015 NA non-coding downstream 359718 11867450 ~ 11867703 (-)
G63219 NA non-coding upstream 82687 12325460 ~ 12325671 (-)
G63267 NA non-coding upstream 111619 12354392 ~ 12355772 (-)
G63502 NA non-coding upstream 424668 12667441 ~ 12670500 (-)
G63555 NA non-coding upstream 466856 12709629 ~ 12709841 (-)
G63578 NA non-coding upstream 525176 12767949 ~ 12797341 (-)
htr2cl1 LOC108267122,LOC108434824 other downstream 260518 11862625 ~ 11966903 (-)
LOC117597110 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108261673,LOC108267241,LOC108267937,LOC108267740,LOC108267935 other downstream 692178 11524826 ~ 11535243 (-)
si:dkey-183c6.7 LOC108267942 other downstream 811524 11402027 ~ 11415897 (-)
LOC113540328 LOC108267738,LOC108267931,LOC108267739,LOC108267932,LOC108267933,LOC108267740,LOC108261673,LOC108267241,LOC108267937,LOC108267929 other downstream 867377 11266384 ~ 11360044 (-)
si:dkey-165a24.9 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC105903083,LOC107572570,LOC107753961,LOC107659726,LOC107588125 other upstream 4189 12246962 ~ 12249754 (-)
LOC113539775 NA other upstream 29445 12272218 ~ 12277669 (-)
tmem256 tmem256,LOC107659713,LOC107564775,LOC107560291 other upstream 241950 12484723 ~ 12489562 (-)
acap1 acap1,LOC107731905,LOC107683535,LOC107595305,LOC107675497 other upstream 1043226 13285999 ~ 13308478 (-)
zgc:194312 LOC108267841 other upstream 1193283 13436056 ~ 13440520 (-)

Expression


Co-expression Network