ponzr6 (LOC108267463)


Basic Information

Item Value
gene id ponzr6
gene name LOC108267463
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12212987 ~ 12221939 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935930.2
TATTCAGCCCTGCTCTCATATCACGCACACACAACAGCTTGCGGCTTCACATCTCACATCCACCTCGAGCAGGGCTGTGTTGCTATAATGGCTAGTACTACAATCACCGTGCAGCCAGGGGCGATGATACCGGCTCATGCCAAGCTTAACACATGGAGCAGTGGCTTgtgtgactgctgtgaggaCATGAGCATCTGCTGTTTTGGTTTCTGGTGCCcctggtgtttgatgtgtacTACAAGCCAAGAGTTTGGAGAATGCCTTTGTCTCCCTCTGCTGGATCTGTGCTTCGGGGCCCTCATACCACCTGCCGCGTATGCTGTAAGAAGTGccatgagagagagatatcGCATCCAGGGCACAATGTGTGATGATTGTTGCGTGGTGACCTGTTGTGGAGTCTGCTCATGGTGTCAGATGGCCAGAGAGCTGAAGTTTCGCAGGCAGCCCCAGGTGTTTGTGAACCCGCCGGTGAACGTGACCTACCAAGCACCGGCGAGCACATCCTACCAGCCAGTGGGGAATCCGTCCTACCAGCCACCCCCGATTAATCCGGCCTACCAGTCGCTGCAGCCTCAGAACCCTCCTGTGTACGCCCAGCCTCACAAGTCACCTGATCCTCAGGGCGCGGGACTGTATCCGGCTGTATAAGTTACATATAATCTACAGAAATCTATAATGTCACAGTCTATTTTATGTAGAatctctttttatgttttttcatcatttcaattGCACTTCAATATGTACGTTTGAAAGAATCAATATTAACCAATGTACAAAGTCTATTTTTatgtgaaaactttttttttccttggaggcataattaaaatgtaatactaTACAATAA
>XM_026935931.2
ttcCCCCAGAGGAAGCTTAAAGGTCCTGtgtagaatcctacaacagcgtgttttcctatcagagGGCTGTGTTGCTATAATGGCTAGTACTACAATCACCGTGCAGCCAGGGGCGATGATACCGGCTCATGCCAAGCTTAACACATGGAGCAGTGGCTTgtgtgactgctgtgaggaCATGAGCATCTGCTGTTTTGGTTTCTGGTGCCcctggtgtttgatgtgtacTACAAGCCAAGAGTTTGGAGAATGCCTTTGTCTCCCTCTGCTGGATCTGTGCTTCGGGGCCCTCATACCACCTGCCGCGTATGCTGTAAGAAGTGccatgagagagagatatcGCATCCAGGGCACAATGTGTGATGATTGTTGCGTGGTGACCTGTTGTGGAGTCTGCTCATGGTGTCAGATGGCCAGAGAGCTGAAGTTTCGCAGGCAGCCCCAGGTGTTTGTGAACCCGCCGGTGAACGTGACCTACCAAGCACCGGCGAGCACATCCTACCAGCCAGTGGGGAATCCGTCCTACCAGCCACCCCCGATTAATCCGGCCTACCAGTCGCTGCAGCCTCAGAACCCTCCTGTGTACGCCCAGCCTCACAAGTCACCTGATCCTCAGGGCGCGGGACTGTATCCGGCTGTATAAGTTACATATAATCTACAGAAATCTATAATGTCACAGTCTATTTTATGTAGAatctctttttatgttttttcatcatttcaattGCACTTCAATATGTACGTTTGAAAGAATCAATATTAACCAATGTACAAAGTCTATTTTTatgtgaaaactttttttttccttggaggcataattaaaatgtaatactaTACAATAA
>XM_026935932.2
TGTCTGACAAACAATACCAGAGAGGCTGAGCTGCTCTGTTACCAAGTGCAGAGTTGTGAAACCTACACACCATTTTCCTGAAGGACAACGACTGGGCTGTGTTGCTATAATGGCTAGTACTACAATCACCGTGCAGCCAGGGGCGATGATACCGGCTCATGCCAAGCTTAACACATGGAGCAGTGGCTTgtgtgactgctgtgaggaCATGAGCATCTGCTGTTTTGGTTTCTGGTGCCcctggtgtttgatgtgtacTACAAGCCAAGAGTTTGGAGAATGCCTTTGTCTCCCTCTGCTGGATCTGTGCTTCGGGGCCCTCATACCACCTGCCGCGTATGCTGTAAGAAGTGccatgagagagagatatcGCATCCAGGGCACAATGTGTGATGATTGTTGCGTGGTGACCTGTTGTGGAGTCTGCTCATGGTGTCAGATGGCCAGAGAGCTGAAGTTTCGCAGGCAGCCCCAGGTGTTTGTGAACCCGCCGGTGAACGTGACCTACCAAGCACCGGCGAGCACATCCTACCAGCCAGTGGGGAATCCGTCCTACCAGCCACCCCCGATTAATCCGGCCTACCAGTCGCTGCAGCCTCAGAACCCTCCTGTGTACGCCCAGCCTCACAAGTCACCTGATCCTCAGGGCGCGGGACTGTATCCGGCTGTATAAGTTACATATAATCTACAGAAATCTATAATGTCACAGTCTATTTTATGTAGAatctctttttatgttttttcatcatttcaattGCACTTCAATATGTACGTTTGAAAGAATCAATATTAACCAATGTACAAAGTCTATTTTTatgtgaaaactttttttttccttggaggcataattaaaatgtaatactaTACAATAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935930.2 False 850 mRNA 0.48 4 12212987 12220279
XM_026935931.2 False 842 mRNA 0.48 4 12212987 12221437
XM_026935932.2 True 872 mRNA 0.47 4 12212987 12221939

Neighbor

gene id symbol gene type direction distance location
rbm4.3 rbm4.3,rbm4b,LOC108267461,LOC107576930,LOC106577685 coding downstream 13635 12195517 ~ 12199352 (-)
LOC113540082 LOC108267460 coding downstream 18304 12190822 ~ 12194683 (-)
rbm4.1 LOC108267459,LOC106608592 coding downstream 23540 12185524 ~ 12189447 (-)
sf1 sf1,LOC107753954,LOC107691964,LOC107562691,LOC107588130 coding downstream 30725 12170525 ~ 12182262 (-)
pygmb pygmb,pygm,LOC108267457,LOC108434859 coding downstream 44886 12150419 ~ 12168101 (-)
fxr2 fxr2,LOC108267464,LOC108434865,LOC107750766,LOC107753958 coding upstream 5482 12227421 ~ 12242773 (-)
ugt5g1 LOC108268336 coding upstream 31306 12253245 ~ 12256515 (-)
LOC113539944 NA coding upstream 38797 12260736 ~ 12263489 (-)
ponzr4 ponzr4,LOC107572169,LOC107753991,LOC107659716,LOC107572567,LOC108267307,LOC108434828,LOC103036765 coding upstream 42042 12263981 ~ 12265953 (-)
LOC113540514 LOC108267264 coding upstream 45498 12267437 ~ 12269217 (-)
G63174 LOC108268320,LOC103041464,LOC108410411,LOC105029413,LOC107562848,LOC107691962,LOC106578044 non-coding downstream 89977 12067332 ~ 12123010 (-)
G63062 NA non-coding downstream 208668 12004007 ~ 12004319 (-)
G63058 NA non-coding downstream 240040 11972711 ~ 11972947 (-)
G63031 NA non-coding downstream 314886 11897845 ~ 11898101 (-)
G63015 NA non-coding downstream 345284 11867450 ~ 11867703 (-)
G63219 NA non-coding upstream 103521 12325460 ~ 12325671 (-)
G63267 NA non-coding upstream 132453 12354392 ~ 12355772 (-)
G63502 NA non-coding upstream 445502 12667441 ~ 12670500 (-)
G63555 NA non-coding upstream 487690 12709629 ~ 12709841 (-)
G63578 NA non-coding upstream 546010 12767949 ~ 12797341 (-)
htr2cl1 LOC108267122,LOC108434824 other downstream 246084 11862625 ~ 11966903 (-)
LOC117597110 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108261673,LOC108267241,LOC108267937,LOC108267740,LOC108267935 other downstream 677744 11524826 ~ 11535243 (-)
si:dkey-183c6.7 LOC108267942 other downstream 797090 11402027 ~ 11415897 (-)
LOC113540328 LOC108267738,LOC108267931,LOC108267739,LOC108267932,LOC108267933,LOC108267740,LOC108261673,LOC108267241,LOC108267937,LOC108267929 other downstream 852943 11266384 ~ 11360044 (-)
si:dkey-165a24.9 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC105903083,LOC107572570,LOC107753961,LOC107659726,LOC107588125 other upstream 25023 12246962 ~ 12249754 (-)
LOC113539775 NA other upstream 50279 12272218 ~ 12277669 (-)
tmem256 tmem256,LOC107659713,LOC107564775,LOC107560291 other upstream 262784 12484723 ~ 12489562 (-)
acap1 acap1,LOC107731905,LOC107683535,LOC107595305,LOC107675497 other upstream 1064060 13285999 ~ 13308478 (-)
zgc:194312 LOC108267841 other upstream 1214117 13436056 ~ 13440520 (-)

Expression


Co-expression Network