fgf11a (fgf11,fgf11a,LOC107750771,LOC107664286,LOC107753963)


Basic Information

Item Value
gene id fgf11a
gene name fgf11,fgf11a,LOC107750771,LOC107664286,LOC107753963
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12357775 ~ 12416784 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026935993.2
CAGGCAAGAGGGGGAGAGACAGGgagtcacacactcatacactctctctgtcacacacttatgccgtctctctctcacacacacatacacatacacatacagagtTCCATACTGACAGAGTTGCCACAGAATCAGGACCTGGGGACTGAAGAGAACTGGACCAGAACTCCCATAATTGGACCTGCGGgacaaggtttctttctcaggACTTGTAAAGCAGGACCGGTGCTCGGAGATGACTGACACGTAGAGCCATTCATAAAGTAAGGGACAGAAATCTGCATCCATCTTCTCCACACCTCCCTCTTCCCACTCAtccctcattcattcattcctctcttCCTCGTGTCTCAGCGTGGGTGAAGGACACAGGACTGCCTGCTCCTCTGTGCTAGCTGCACACCACAGTGCActccttcctctctccctctcactccctctcaTTCATTCTCCGCTCTCTCCCTCGTTCCTGAATGTCACCTCTGCATGGGGGAGCCTTTGGAATTTACAAACCTTTTCCCAAAGGCCAGAGATGGAGCGAACGCTGAGGGGGCTAAAAGAGGACAGAATCAGTCTTCCGTCCAATTCCTTTCATCCTCGCTTCTCTTTCTGTCATCCCGTAATCTGGACGTGAGCTTCTGGCATTGTTTGAACCTGGTTTagatttcttcatttttttaatgtattataaaaatgatttctttgcTTTTGAAATTGTGTCATTTTGTAATTGAATTCCACTGCGGATTGCCGCATTTGTAGTTTTTTCCTGGAACATTTCTGTACATTGCAATTTGCGTTTTTGAATCTGGCTCGCACAATGTTCTCTGCTGTGAGACACTGATAACATCTGGAGTCGATGTAAAGCTGAAGTGTCTGCTCGaggtttctctgtgtgtgtggagctgggACTTACCGGACAGGTCAATCTGCGACGGGAcaagagacacagacaggtcAAAACTAGACAGAAGCATGCTTTGTCAGTGCTTAGTTCTTCCAACAGCAACATGACTCTGATAATAACTCACTGTCACACTCGAGGTCCGACACTGGCGTATCAGAGCGACTTCTGAAACACGACACCAGCAACCCAACCAACAACTTCAGCATCAATAACAGCCTCCACCCTCAAGAGACTTTTCTTTAAATTGTATCTTTCTGGCTGTGCCCCGTTGCCCGTCTCTGTCCATCATCCTGGGTGGTTGGGCGGCTTGGCGGCTCAGTGACGCCCTCCGTGCCCCTTGGGTGAGCTGGGCACAGCAAGATGGCCGCCCTCGCCAGCTCGCTGATCCGGCAGCGCAGGGAAGTGAAGGACCAGCAGGCCAACCGGCAGATCTCCAACAAGCGCAAACCCTGCCCCAAGAGCAACAAGTCTCTGTGTCAAAAACagatcctcatcctcatctccAAAGTGCGACTATGTGGCAGTCgggggagaaaactggagaagaGACCAGaGCCTCAGCTGAAAGGCATCGTCACACGTCTGTATTGCCGGCATGGATTCTACCTCCAGATGTTACCAGATGGCACCATGGACGGCACAAAGGACGAAAACAGCTCCTTTTtgTTGTTCAACTTGATTCCTGTGGGTCTGAGAATAGTCGCTATCCAGAGCACGAAGACGGGCCTCTATGTTGCCATGAACAGTGAAGGCTATCTCTACACTTCCGAACACTTCACGCCGGAGTGTAAGTTCAAAGAGTGCGTGTTTGAAAACTACTACGTGACGTACTCGTCCATCCTGTACCGGCAGACGCAGTCTGGACGAGCCTGGTACATCGGCATCAACCGTGATGGGCAGGTCATGAAGGGCAACCGTGTCAAAAAGACAAAAGGAGCCGCCCACTTCCTGCCGAAACTCATTGAAGtGGCCATGTACAGGGAGCCTTCGCTGCATGACATCGGTGAGCAGAGCCCACCAcggaaaacagccaaaacatCAGACTCTCCTGTCAACAATGATGACAAGAATGACCCGTTGCCTCCTAAAACTAGCGCCTCCTAGCGACCGGAGGATATAAGACTGGAGCATACGCCAACATACAAAGGGAAATGGCATGGGCATGATAAAAACAGTCAATGCAGTCCTACTATTGATGCCATTACCCATGATGCAGGAGCTCAATGAACCCTGCCTGATGGACTCCTCTTCTCCTGGTACCGCCTTCCTGTTTGAACCTGGGAATTTTTTGAGCAATAAGAACCCTGAGTTattccaggtgtgtgttttaagaGAGAAATGAGCTGTGACACCGTtcagcacctttttttttttgccttttgtcCGACCAGTGTCAGTTTCAAACACCATCTCATGACACCGGAAGATCCtgacatttggccatattgttttGGAAGCATCTGTTCGTGTTATCCTGTGCAGTCCTCCTCCTGTATCTCTAAGCTGAGTGTAATCTCCTCCTCGCCTCCTCTGCTGTTTGATTAGTTTGTGACATAGAGTCAATTTTCCACTCCACAGCACAGGAAAAACCCAGCATGTGCTCCAGGGTACCATTAAGACACTCGCATGCCTGTGTGAggttcacacacaaacacacacatacaccttatacactcacacacactcacacacacacacacataaagaaggaaatttgatttaaaaaaaaaataacacacacaggagtAATACACTCTCCCTTTCCTGTATGATAATGCTATAAAGATATACACCCCAAGGAGCTAAAAAGCTTTCTCTGCCCATATACAATAGCCTCAAAActgatgaaagtgtgtgtatgtgtgagaggtGACTCGCGACTGTGGAAACTGAGGTACATTATCACTTTCTTTTGCTTTGATTGGTTTTTCGCTGGATGGCCTGGGAGCAATACTCCTGCTGCTCTCCTGGTTCCTATTCCATTTCatcttgtcttttcttttctttttcgaTAGCTGTTTAAGCCTGTTTAATTTGCTAAGCAATCAGTTTGGTGCATTCTTCAAGTCCATAGTCTTGTAAGCAACGTTTGACCACATTTGACCAAAGGCAGTTACTGGAAAACCAAGCAAAATGGAACAACAAGCATAAATTGTCTTTTGTCttctaatattatataatgtactCAGTAGTATCACATTCTTTTGATTCAGATTTTTccaagtaacaataacatgatATTAGTGGCTTTTTCTTTACATAATGTTTCTAATAATTTTGTATATGTTGCCTAGCAGGGCTTTTAAACCATAGAGATGATCCACTCCCCCTGCTTATGAAAGTCTCTAATCAGAAACGTCTGTCCTAATTAAGAGCGACCTTCTTATTGCTCTTGGTGATGGTGTTCTGGAGCAGCTGAAATAACAATAAGTCTGAAATAAtagcagaaataataataatagttcaaCATCCCGAAATACTGCATCTGGGTGCAACATGAAGGCACAAAGAGCACCCTGAGATAATGTGCTGACTGTAGAGATGAAGAAAGAATAGCAATTTTTCTGTTTAGATCAATGCAATGATCTTCTCTAACTCCAGTATGAAGGAATTGTGGAAAGATGATGGAAAGATAACAGATAGCAGATAACAGATTGCTTCATCAGTCTTACGAATCattggcatttatttattgcactgaAAAACTGGTcaactttaaaattaaataacattgaAATAACAGTGAACTCCAACTTGCTTTAGAATTTGCAaccatgaatttatttatagctCTAAGAGCCTTACAATGCAacataacaatataaaaaaaaacattctatacaCTCTGAAGGGCTAATTTCATCCATAAAGTTCACTGTATTCTCCAATAGCTTAAGTTTGTCACATATTCTCTTGTCACATGTCACAAAATTGTCACAAAACAATTTcctaataatgaataaaagacCAGTAgggataaaaaagtatgtggatgTTTTGATAACTGAAGGTAAAAAGGAAGATGCCTTGGAGGTTAAGCCTGATTAAGACCTAGTGGCCTGGTCTTATTAATGACTGTAATTACACTGCTAAATTGCTCTTTTAGTCTCTCATACTCCCTCTTGCCACATTGTCTCATGTGCCCAAGGCAGAGCTCGTTATTTGCATACACTTTCACAACTCAGACCATTTTACGACCGAGGCTGATTTCAACCGCAGCCAATTACAGAGGAGATTTACAAACGTTTTTAGGCTATGTAACTAGCTGAGATTCATCTACAACTAATTACACTACAAACATGACTTCTGTGGTAGAATTTCAAAATGGTCGGGATTACTTTATATTAAACAAGGAGCTCCTGTTCTTAAAAAGCTTGACTCTGGAGGAAGTTTCCGATAAACTATAGCTAGCTAAAGGATCGTTAATGAAAGCCCGTTTTTGTTCATGAGATCAATTTAAATGTATGTCTGCATGCTTGACGTGATTTTCTCAGCTTTCTATGAGGATGATAAGCTTGAGAAAGAACATCTGAAGTCTTGGTTAGAGGGGGAGAACTTGCTGTATATTGTGAAGTTCTTCATTTAGTTTCTAAGCCTGGCTACTGTTAAACAATTCATTTAAGTTCTTTTTAGGTAATGGCAATTCCAACTTGTACAGCCAAACAATTCAAATGGTTTGTGTTAGAGTATGCCTATAGCAAAAGCCAATTATCTCTTCCCTTGATGCACTGAGTGCTTTCATTTGCATAACTGCCAAATTGAAAGTCATGGCTAAATAGTTATGTGGAATTGAAGTCAGAGTTGAATTGGTGGTGATGGCAGTATATTTTGTGTAACTGTTTTGTATTTGCATCTACACCAATTTAATTGTATCACAAACTGAGTGGGAAGGAGATGCAGTTATGAGTATAATccttttaataaaactttacaaATTTACAGGCACATTC

Function

symbol description
fgf11a Predicted to enable sodium channel regulator activity. Predicted to be involved in regulation of voltage-gated sodium channel activity. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and nucleus. Is expressed in kidney. Orthologous to human FGF11 (fibroblast growth factor 11).
fgf11 Predicted to enable sodium channel regulator activity. Predicted to be involved in regulation of voltage-gated sodium channel activity. Predicted to be located in extracellular region. Predicted to be active in cytoplasm and nucleus.

NR:

description
PREDICTED: fibroblast growth factor 11-like

GO:

id name namespace
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K22413 FGF11_12_13, FHF3_1_2; fibroblast growth factor 11/12/13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026935993.2 True 4857 mRNA 0.43 5 12357775 12416784

Neighbor

gene id symbol gene type direction distance location
chrnb1 chrnb1,LOC108267171,LOC107659727,LOC107664276,LOC107564779 coding downstream 5627 12326466 ~ 12352148 (-)
chrnb1l chrnb1l,LOC108268067,LOC108434832,LOC107753962,LOC107667733,LOC107560277 coding downstream 34346 12309531 ~ 12323429 (-)
cldn7a cldn7a,LOC108268068,LOC108434869,LOC103035548,LOC107667734,LOC107560284,LOC107753993 coding downstream 55321 12295911 ~ 12302454 (-)
LOC113539774 LOC108268321 coding downstream 72889 12278689 ~ 12284886 (-)
LOC113540514 LOC108267264 coding downstream 88558 12267437 ~ 12269217 (-)
tmem102 tmem102,LOC108267795,LOC108434872,LOC107659729,LOC107750772,LOC107560290,LOC107564774 coding upstream 47732 12464516 ~ 12478964 (-)
LOC117597087 LOC108267594 coding upstream 263577 12680361 ~ 12691838 (-)
LOC113540289 LOC108267594 coding upstream 280975 12697759 ~ 12707044 (-)
ufsp1 ufsp1 coding upstream 293407 12710191 ~ 12712844 (-)
pop7 pop7,LOC100709557,LOC107659735,LOC100707405,LOC102794197 coding upstream 317862 12734646 ~ 12736518 (-)
G63267 NA non-coding downstream 2003 12354392 ~ 12355772 (-)
G63219 NA non-coding downstream 32104 12325460 ~ 12325671 (-)
G63174 LOC108268320,LOC103041464,LOC108410411,LOC105029413,LOC107562848,LOC107691962,LOC106578044 non-coding downstream 234765 12067332 ~ 12123010 (-)
G63062 NA non-coding downstream 353456 12004007 ~ 12004319 (-)
G63058 NA non-coding downstream 384828 11972711 ~ 11972947 (-)
G63502 NA non-coding upstream 250657 12667441 ~ 12670500 (-)
G63555 NA non-coding upstream 292845 12709629 ~ 12709841 (-)
G63578 NA non-coding upstream 351165 12767949 ~ 12797341 (-)
G63580 NA non-coding upstream 382382 12799166 ~ 12872342 (-)
LOC117597210 NA non-coding upstream 524886 12941670 ~ 12951095 (-)
LOC113539775 NA other downstream 80106 12272218 ~ 12277669 (-)
si:dkey-165a24.9 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC105903083,LOC107572570,LOC107753961,LOC107659726,LOC107588125 other downstream 108021 12246962 ~ 12249754 (-)
htr2cl1 LOC108267122,LOC108434824 other downstream 390872 11862625 ~ 11966903 (-)
LOC117597110 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108261673,LOC108267241,LOC108267937,LOC108267740,LOC108267935 other downstream 822532 11524826 ~ 11535243 (-)
si:dkey-183c6.7 LOC108267942 other downstream 941878 11402027 ~ 11415897 (-)
tmem256 tmem256,LOC107659713,LOC107564775,LOC107560291 other upstream 67939 12484723 ~ 12489562 (-)
acap1 acap1,LOC107731905,LOC107683535,LOC107595305,LOC107675497 other upstream 869215 13285999 ~ 13308478 (-)
zgc:194312 LOC108267841 other upstream 1019272 13436056 ~ 13440520 (-)
G64436 NA other upstream 1816025 14232809 ~ 14243681 (-)
tbc1d19 tbc1d19,LOC107660707 other upstream 3462687 15879471 ~ 15904355 (-)

Expression


Co-expression Network