anxa13l (anxa13,anxa13l,LOC108267681,LOC103040954,LOC107727547)


Basic Information

Item Value
gene id anxa13l
gene name anxa13,anxa13l,LOC108267681,LOC103040954,LOC107727547
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 27521690 ~ 27531090 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936170.2
CGTAAAGTAAACAGATGACGTCAGAGGCGTGACTGTGCAGGACGGGCGCGCGCGCAGGACGCAGTGAGAGTGTGAGCGCGTGCACTCGGGATCAGCGCGATAAAGATGGGCAACGTTCAACCCACGGTTGTTCCCTGTGAGGACTTTGATGTGATGGCGGATATTAAGGAGATCCGCAAAGCCTGCAAAGGAATGGGCACCGATGAGGAGACCATCATCTCCATCTTAGCTAACCGCTCCTCGGCCCAGCGCATGGAGATTAAACAAGCGTACTTTGAGAAATATGATGATgagctggaggaggtgCTGAAGAGCGAGCTGACTGGAAGTTTCGAGAAGGCGATCATTGCCATGTTGGATCCGCCTCACGTCTATGCTGCTAAAGAACTGCGACGCGCCATGAAGGGAGCCGGAACCGACGAGGACGTGCTGGTGGAGATCCTGTGTACCAGCACCAATCAGGATATTGTGAATATTAAGGAGGCGTACGCTCAGGTACACGAGCGTGACCTGGAAGCTGACATCGAGGACGACACGAGCGGAGACGTGAGAAACTTGTTGATTTCACTCCTTCAGGCGAGCAGGGATGAGGGTTTTGACGTGGATGAAGGATTGGCTGAACAGGACGCCATATCGCTGATCGAGgCTGGAGAAGGACGCTTTGGCACGGACGAGTCCACTTTCACCTACATCCTCACTCACAGGAACTACCTACAGCTTCAGGCCACCTTCAAATACTACGAATCCatgtctGGGACAGACATCCTCGATGCCATCAGCAACGAAGCCACAGGGACTTTAAAGGACTGCTACATAACTCTGGTTCGGTGCGCTAAAAACCCGCAGCTCTATTTCGCCCGTCGCCTGAACGCAGCGATGTCGGGCGCAGGGACGGACGAGGACACGCTGATCCGCATCATAGTGGGACGCTCAGAGTTGGACCTGGAGACCATTAAGGACATGTATCTGGAGAAGTTTGACGTGACGTTAAAGGACGCTCTGAGCTCGGACTGCGGCGGAGATTTTAAGCGCCTCCTGCTGGCTGTCCTTcactgaagagagaaagagagtcttACACTAATCCCTACACCAGGAATGAACCTTCTCACCAACACTGCctagaggaataacacacaggCTGTGTTCCGATACTGTTCTAACACGCCCTCGTCCACTTCCCCTGAAACTCCAGTCAGTCTGAAGGAAAATGGTGACAAATTTGTCtcttttattcacatttttacataacGGTAGAaaatcaatctttttttttt

Function

symbol description
anxa13 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm. Orthologous to human ANXA13 (annexin A13).
anxa13l Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm. Is expressed in basal plate midbrain region and nervous system.

NR:

description
annexin A13-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function
GO:0005544 calcium-dependent phospholipid binding molecular_function

KEGG:

id description
K17099 ANXA13; annexin A13

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936170.2 True 1274 mRNA 0.52 11 27521690 27531090

Neighbor

gene id symbol gene type direction distance location
acbd5b NA coding downstream 26763 27484777 ~ 27494927 (-)
slc35a3b LOC108267645 coding downstream 65977 27447255 ~ 27455713 (-)
cmpk cmpk1,cmpk,LOC107719256,LOC107681787,LOC107559368,LOC107671754 coding downstream 80196 27433692 ~ 27441494 (-)
insl5b LOC108268041 coding downstream 107126 27413456 ~ 27414564 (-)
si:ch211-107p11.3 LOC108267482 coding downstream 136157 27381175 ~ 27385533 (-)
gpr158b LOC108268005 coding upstream 54484 27585574 ~ 27619191 (-)
trnat-ugu_7 NA coding upstream 89966 27621056 ~ 27621128 (-)
trnat-ugu_9 NA coding upstream 93646 27624736 ~ 27624808 (-)
dpp6b LOC108267703,LOC108430761 coding upstream 173191 27704281 ~ 27839097 (-)
cpdp LOC108268310,LOC108430687,LOC105899208 coding upstream 525622 28056712 ~ 28064529 (-)
G72094 NA non-coding downstream 76576 27444743 ~ 27445114 (-)
G72074 NA non-coding downstream 114871 27403137 ~ 27406819 (-)
G72073 NA non-coding downstream 119055 27401670 ~ 27402635 (-)
G71955 NA non-coding downstream 234992 27286239 ~ 27286698 (-)
G71952 NA non-coding downstream 238033 27281049 ~ 27283657 (-)
G72517 NA non-coding upstream 38154 27569244 ~ 27970795 (-)
G72607 NA non-coding upstream 381780 27912870 ~ 27958488 (-)
LOC117597146 NA non-coding upstream 443380 27974470 ~ 27985856 (-)
G72604 NA non-coding upstream 480594 28011684 ~ 28012804 (-)
G72652 NA non-coding upstream 536492 28067582 ~ 28068084 (-)
tsen15 tsen15 other downstream 37857 27474765 ~ 27483833 (-)
LOC113540508 LOC108268039 other downstream 89012 27415267 ~ 27432678 (-)
trnat-ugu_4 NA other downstream 125467 27396151 ~ 27396223 (-)
trnat-ugu_3 NA other downstream 126261 27395357 ~ 27395429 (-)
G71909 LOC108267490 other downstream 317504 27203783 ~ 27204186 (-)
pcyt1aa pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373 other upstream 16662 27547752 ~ 27555987 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other upstream 484974 28016064 ~ 28041785 (-)
LOC117597043 NA other upstream 666901 28197991 ~ 28225603 (-)
trnas-uga_1 NA other upstream 705096 28236186 ~ 28236267 (-)
trnas-uga_2 NA other upstream 705634 28236724 ~ 28236805 (-)

Expression


Co-expression Network