tm4sf5 (tm4sf5,LOC108442834,LOC108410825)


Basic Information

Item Value
gene id tm4sf5
gene name tm4sf5,LOC108442834,LOC108410825
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13264271 ~ 13267825 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936178.2
ACCACCGTATGTCCTTCATTAGCTGGGGCACTAATCTTCATTGGCTCGTTAATACACAGCTCCTCTTTGTTTGACTTTATTCACCATTGGGCACAGAGGCACGGCTGTTATCTAGAGTTTATACACTATCCGTCTTGGTTCTGTCTTTAGGGTCTTAAATTTGGTGAACTAACAGTCAAggttaaagaaaaaagtcaaatatttaaaaagatgtgTTGTACAGGAAAGTGTGCACGCTTAGTGGGTTTGATGCTGTTGCCTTCTGCATTTCTGTGTATGATAGCCAACCTTCTGTTGTTCTTCCCCAGTGGCAATGTTTTGGAAAATGATCAGATCTCCCTACAGGTCTGGCTGATGGGAGGACTCTTCGGTGGAGGCTTGTTTATGCTGTGTCCAAGCTGTTCGGCTGTCAGAGCTGGTGGAAAGGGTTGCTGTGGGAAGGGCTGCTGTGGAAATCGTTGCCGCATGCTGAGCTCTGTGTTTTCCTCTGCATTTGGTCTAATTGGGGCAACATACAACACCAGCGTGGCCTCTGCAGCACTGGCTATTGGACCAAAATGCCGCCTGGACTCAGGGACCTGGGAATATCCCTTTGAGAACCTGCCCCAAGATAATACCAGCTACTTGGTGGATAAATCTCAGTGGTCTGTCTGTGCTTTCCCGGAAAATGCAGTCCTCTGGCACATCGTTCTCTTCTCCATCCTACTAGGTCTGGGCGTCCTGCAGGTCGTGCTCCTTGGGATCCAGATCATTAACGGCTGCATGGGTTGTCTGTGTGGAGACTGTCGAGAAAGCAGAGAGGATGATGGAGGATTGTGAATGGAAGATAGTATCAAGACAAAATCAAGGAATCAAATTccataaaacatattttgttcACTGATAGATAGCAGTCACACGCATATCTATTTATTAATGTGATCTACATGATCAAATTATAcctgtataaaaatacattttcagcaGTTTCATCTTTAATTTACAACAGGATCTATTTTTCGTAGTGCATTTACTATCAGTTACCTGAAAGCAATACTGCATATGTGAACATTGCTTAGGTATCTACTGTACACTGTGCTATTTATATTGCTATTACAATCAATTATTAAACTTGATATGGCATAAGTATGTATTAATTATTGACTAAACCTGAGTAATATCTTTACATAGAGCTTGAAGCTCTCAGGCTGGGTAGTAAAATTTGCTTTACCTTTGACCCTTAAATGTGCACATATTGTGTGGGTGTTCTTGttaaaatgaatccatttttaTACAACAATAATGTTTACATGATTTCTGCAGACTGGAACATTTTATCACTGAAAATATTCAGCACACTAAAAGTGCATTCATTAACATCTTGCTCTGCTGCAGTGCTTTCGCTTCTCACCAGTTTGAGCTAGATCCTGTTTGAAAGCAGGATCGGGGCACCCTTGTGGCAGAAGTGACATCTACAGCTGTATAAACAGCTCAGAAGAGACTTTGAATGTAAGGTGTTTGTAGAAAGCATCATCTTGTACTCAGTGttattaatgttcacatcattaCTATTAGACAGCATGAAGAAGGCTTTGGACTTCAggtgatatgaacagttttgctacaatggcttaggactacaattcccttgatagctttaggactacaattcccttgatagctttaggactgcaattcccacgaacagttttgcactcaagtctccatcagtggacagttgataacttcaacaaaatagactttatGTGTAAACTATTATGAACTTTCatcacacattttcactttttggcaagagaattatttataatcacactctccggtgtcacccaga

Function

symbol description
tm4sf5 Acts upstream of or within skeletal muscle fiber development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including gut; myotome; neural tube; notochord; and trunk. Orthologous to human TM4SF5 (transmembrane 4 L six family member 5).

NR:

description
transmembrane 4 L6 family member 5

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24920 TM4SF5; transmembrane 4 L6 family member 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936178.2 True 1831 mRNA 0.41 5 13264271 13267825

Neighbor

gene id symbol gene type direction distance location
sst5 LOC108267674 coding downstream 20505 13242669 ~ 13243766 (-)
bcl6b LOC108267673 coding downstream 41141 13216900 ~ 13223130 (-)
LOC113540725 NA coding downstream 59809 13204273 ~ 13204462 (-)
pop7 pop7,LOC100709557,LOC107659735,LOC100707405,LOC102794197 coding downstream 527753 12734646 ~ 12736518 (-)
ufsp1 ufsp1 coding downstream 551427 12710191 ~ 12712844 (-)
si:ch73-335l21.4 LOC108268348 coding upstream 120508 13388333 ~ 13389965 (-)
ntn5 LOC108267835 coding upstream 237916 13505741 ~ 13521526 (-)
cnpy4 cnpy4 coding upstream 260061 13527886 ~ 13533264 (-)
usp12b LOC101154659,LOC107707922,LOC108412583,LOC106934565,LOC101071205 coding upstream 416911 13684736 ~ 13695000 (-)
col4a5 col4a5,LOC106608922 coding upstream 479414 13747239 ~ 13797445 (-)
LOC113540618 NA non-coding downstream 4903 13251977 ~ 13259368 (-)
G63793 trip6 non-coding downstream 29323 13232733 ~ 13234948 (-)
LOC113540062 tmem88,LOC107719780,LOC103146602,LOC107597044,LOC107664278,LOC106935498,LOC103375639 non-coding downstream 50035 13208453 ~ 13214236 (-)
G63787 NA non-coding downstream 64362 13199019 ~ 13199909 (-)
G63789 LOC102193867,LOC104942379,LOC100699848 non-coding downstream 68390 13194062 ~ 13195881 (-)
G63866 slc16a13 non-coding upstream 10711 13278536 ~ 13279774 (-)
G63913 NA non-coding upstream 150487 13418312 ~ 13418530 (-)
G63920 NA non-coding upstream 174704 13442529 ~ 13442830 (-)
G63908 NA non-coding upstream 180130 13447955 ~ 13466718 (-)
G63907 NA non-coding upstream 182612 13450437 ~ 13467402 (-)
tmem256 tmem256,LOC107659713,LOC107564775,LOC107560291 other downstream 774709 12484723 ~ 12489562 (-)
LOC113539775 NA other downstream 986602 12272218 ~ 12277669 (-)
si:dkey-165a24.9 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC105903083,LOC107572570,LOC107753961,LOC107659726,LOC107588125 other downstream 1014517 12246962 ~ 12249754 (-)
htr2cl1 LOC108267122,LOC108434824 other downstream 1297368 11862625 ~ 11966903 (-)
LOC117597110 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108261673,LOC108267241,LOC108267937,LOC108267740,LOC108267935 other downstream 1729028 11524826 ~ 11535243 (-)
acap1 acap1,LOC107731905,LOC107683535,LOC107595305,LOC107675497 other upstream 18174 13285999 ~ 13308478 (-)
zgc:194312 LOC108267841 other upstream 168231 13436056 ~ 13440520 (-)
G64436 NA other upstream 964984 14232809 ~ 14243681 (-)
tbc1d19 tbc1d19,LOC107660707 other upstream 2611646 15879471 ~ 15904355 (-)
smim20 NA other upstream 2705754 15973579 ~ 15991985 (-)

Expression


Co-expression Network