LOC113540016


Basic Information

Item Value
gene id LOC113540016
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23537428 ~ 23544732 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936182.2
TGCCCACCCCCTGCACCCCATGGGGGCTACTCACTGGAGccttgcatttgcatttttagagCCATTCTCACGAACAAACCTCTGCAAAGACGTGAGGTCTGCTGCCCAAATCTGACCATGTCCATCATGCCAACTGCATGCTTCCTGCTGGCTCTAATCGGCTGCATCAGTGCGCAGTTTTCGCACTCTGCGCCGCGGGAAACAGCTCGCAGAGGCAGGAATAAGCGCCTCAGCTGCACCGTGGACTCCTCAGTGACGCTCTCCTCCACTGCTATCCACTGGTACAGACAGAAACCCGAAGAGGCCCTGCAACGCCTATTGTACTTCGGAGCTGGAGCCTCAACAGCCACCATCGAGGATCAATTTTCCCGCAGATTTACGGGTGGTAAAAAGGACAGCACCTTATCCCTGACCATCACAAGCGTAAGCGACGACGACGCGGCCACTTACTACTGCGCGCTGTGGCGCGGGGATGAGAAAGTATTCAGCTCAGGCATCAGACTGTATGTTACAGATGGTAGCATAAAGACTCCCAAACTGTCCGCGTTCCCAGCGTCCAGCACTCAGTCGAATGGAAAGCGTGTGTTGCTGTGCCAGGCGAGAAACATGGTCCCGGACTTTGTGAAATTCACATGGCATGCAGAAGATCAGAGTGGAACAAAAGTGGACCTGAAAAGTGATGAGCAGCTGGAGCAGAGAGATGATCTTCCAGAGGTCAAAATAACCAGCATGCTCATTGTAGACAAACAGAAAGTGAAGACCAATAAATTCACCTGTTCTGTTCTACATGACAGCAGCATTAAAGAAGTGAAAAGAGACATTCCAAGGCAACAAGATGAAGAGAaacctgatcctgatcctgtcCCTGCTACTACCTGTCCAAccccaaaagaaaaagaacaacaacaagagGTAAAAGAGGAAGacaaagaggaggaggaaacaCCTatatatgGTTTGTTTGAGCTCAGACGCAGTCTGCATCTGTTCAGTGTGGTGTATGTGATACTACTGgtgaaaaatgtgttgtatTTCTGCACCGTGTCTGTCTTACTGTATAAAAGAAATGCTGCAAACAAGGAGATGCTCAGAAGCAAGGCACACTGATCAGTCCATCAGCcaaacagcatgacacacaacACCAAGAGTTTTCTAGACAACAAACATTTACCACATCCATTTTCTTATTTACATTGCAACATATTTGTCTTAGTTACTCTGATTAACCAGAGagataaatactttttttattttactatttccTCATAACAGTTAATACTTTCAATATGAAGTCTTCGGACAAACGacttttttgttctctttggATTAGTGATAAGTAAATAGTTTAATGgagtttaatttagttttagttCCTGCTCTACTCTGTATGCATTACCAAGATGTTTTCAATAAATTACTTCAAAAACTAA

Function

GO: NA

KEGG:

id description
ko04658 Th1 and Th2 cell differentiation
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936182.2 True 1430 mRNA 0.45 6 23537428 23544732

Neighbor

gene id symbol gene type direction distance location
LOC113540113 LOC108267226 coding downstream 32247 23466417 ~ 23505181 (-)
LOC113540011 NA coding downstream 73703 23446805 ~ 23463725 (-)
LOC117597115 NA coding downstream 94685 23430300 ~ 23442743 (-)
LOC113540008 NA coding downstream 118538 23409414 ~ 23418890 (-)
nol7 NA coding downstream 154540 23376456 ~ 23382888 (-)
amph amph coding upstream 2438 23547170 ~ 23583496 (-)
fam49ba LOC108267758,LOC106592588,LOC107713994,LOC107718035,LOC107657432,LOC107556887 coding upstream 213652 23758384 ~ 23782113 (-)
asap1a LOC108267580,LOC108437251 coding upstream 239366 23784098 ~ 23843304 (-)
ubtfl ubtfl,LOC108267581,LOC107718032 coding upstream 300312 23845044 ~ 23858386 (-)
slc4a2a slc4a2,LOC108413474 coding upstream 315140 23859872 ~ 23899907 (-)
LOC113540115 NA non-coding downstream 83207 23453233 ~ 23454221 (-)
G69551 NA non-coding downstream 139465 23396664 ~ 23397963 (-)
G69503 NA non-coding downstream 258646 23278575 ~ 23278782 (-)
LOC117597081 NA non-coding downstream 263814 23272162 ~ 23273614 (-)
G69320 NA non-coding downstream 482045 23054514 ~ 23055383 (-)
G69649 NA non-coding upstream 49599 23594331 ~ 23594544 (-)
G69691 NA non-coding upstream 106319 23651051 ~ 23651866 (-)
G69916 NA non-coding upstream 377374 23922106 ~ 23922538 (-)
LOC117597086 NA non-coding upstream 386601 23931333 ~ 23932235 (-)
G70025 NA non-coding upstream 593561 24138293 ~ 24138492 (-)
LOC117597117 NA other downstream 5412 23531238 ~ 23532016 (-)
LOC113540013 NA other downstream 19758 23516930 ~ 23517670 (-)
LOC113540114 LOC108267227 other downstream 21069 23515699 ~ 23516359 (-)
LOC117597116 NA other downstream 22493 23514374 ~ 23514935 (-)
LOC113540012 NA other downstream 23389 23513456 ~ 23514039 (-)
G70255 rnf220 other upstream 759642 24304374 ~ 24304926 (-)
ccdc24 ccdc24 other upstream 1021009 24565741 ~ 24586048 (-)
ltb4r2b NA other upstream 2827189 26371921 ~ 26376408 (-)
G71596 NA other upstream 2927348 26472080 ~ 26551030 (-)
G71832 NA other upstream 3551870 27096602 ~ 27100858 (-)

Expression


Co-expression Network