LOC113540027 (rgs20)


Basic Information

Item Value
gene id LOC113540027
gene name rgs20
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21427185 ~ 21430580 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936203.2
GTAGGGGGAGTGCAGCGCAGACCGGAGCACGGcgcagagatgatgatgatgggcgTGTGAGCAGCGCGTCGTGAGTTATCCACACCGGGTTCCAGTGGTAATGCGCTCATGGGGTCTGAGCGGGTGGAGATGGGGAAATGTCCAGAACAGGACACTGGAAATTCCGTCCAGACGCATATCACTTCTTCCAACAAAGATATGCAGGACAGCGTGAACAGGTACACTCTTGGCTGGCTGAATGCACCTCCAAACGCTTGCTGCTTCTGCTGGTGCTGTTGCTGTAGCTGCTCCTGTCTTACAGTAAAACCTTCTAAGGCAGAAAAGATTAAGGAGAAGacacatgaaaaagaaaatgaagctACAGTTGAGGAACCAGCTGGTCCGACACTACAGGAGGCCCAATCGTGGGCAAAATCATTCGAGCACTTGATTAAGAGTCCAAATGGCCGGGCCAATTTCCGTCAGTTTCTTAAGAGTGAGTTCAGTGAAGAGAACCTGTTGTTCTGGCTGGCCTGTGAGGAGCTGAAGAAAGAGACCAACAGAACTGTGGTGGAACAGACTGTTAAGCAAATATATGAGGACTTTGTCTCTGTGCTGTCACCTAGAGAGGTGAGTCTGGATTCACGTGCACGAGAGGTGATTAGCAAGAACATGCTGGATCCATCCTCACAAACCTTTGATGAGGCACAGCAGCAAATATACACACTCATGCAGCGAGACTCATATCCTCGTTACATGAACTCCAGCGTTTATGCAGATCTTATTGCAAGTTTGGAAACGGCTAAAACAGCTGAGGAGTCCTAACACACAGGCACATACAGACTCATATACATAATACAGaacctctatctatctatctatctatctatctatctatctactacacacactctgaacaaTTCAGTGAATTCTGACACTTACAGTGAGACGACTATCTCAGACAcaaatacagtcccctctgaaagtattggaagggccaattcttttgtttttgctatacactgaagacatttgggtttgagatca

Function

symbol description
rgs20 Orthologous to human RGS20 (regulator of G protein signaling 20).

NR:

description
regulator of G-protein signaling 20

GO:

id name namespace
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936203.2 True 1026 mRNA 0.47 5 21427185 21430580

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc NA coding downstream 8946 21418168 ~ 21418239 (-)
mrpl15 mrpl15 coding downstream 9357 21413861 ~ 21417828 (-)
sox32 LOC108267240,LOC100698545 coding downstream 25917 21399555 ~ 21401268 (-)
sox17 LOC108267806 coding downstream 47226 21376395 ~ 21379959 (-)
LOC113540120 LOC108267808 coding downstream 76374 21337108 ~ 21350811 (-)
fastkd3 fastkd3 coding upstream 50035 21480615 ~ 21485813 (-)
myl12.1 LOC108267514,LOC101069867,LOC108436131,LOC103377455,LOC101484951 coding upstream 57607 21488187 ~ 21492336 (-)
emilin2b LOC108267875 coding upstream 123946 21554526 ~ 21580543 (-)
smchd1 smchd1 coding upstream 151642 21582222 ~ 21623632 (-)
adcyap1a LOC108268182 coding upstream 299615 21730195 ~ 21735758 (-)
G68495 NA non-coding downstream 18978 21407111 ~ 21408207 (-)
G68466 plag1 non-coding downstream 106039 21320818 ~ 21321146 (-)
G68186 NA non-coding downstream 623081 20803417 ~ 20804104 (-)
G68108 NA non-coding downstream 790986 20635904 ~ 20636199 (-)
G68107 NA non-coding downstream 791392 20635532 ~ 20635793 (-)
G68519 NA non-coding upstream 41052 21471632 ~ 21471839 (-)
G68520 NA non-coding upstream 42239 21472819 ~ 21473032 (-)
G68577 NA non-coding upstream 44007 21474587 ~ 21475776 (-)
G68585 NA non-coding upstream 66352 21496932 ~ 21501433 (-)
G68740 mrc1 non-coding upstream 397693 21828273 ~ 21828833 (-)
LOC113539989 LOC108436138 other downstream 56175 21354619 ~ 21371010 (-)
G68462 NA other downstream 97935 21326046 ~ 21329250 (-)
chchd7 chchd7 other downstream 113288 21304692 ~ 21313897 (-)
znf16l LOC108268318 other downstream 601665 20778538 ~ 20825520 (-)
snrpf snrpf,LOC106609479,LOC107738052 other downstream 1461334 19962582 ~ 19965851 (-)
G68760 NA other upstream 503946 21934526 ~ 21935169 (-)
LOC113540019 LOC108268143 other upstream 1199035 22629615 ~ 22636088 (-)
lrrcc1 lrrcc1 other upstream 1861468 23292048 ~ 23306934 (-)
retreg1 fam134b other upstream 1900436 23331016 ~ 23346573 (-)
LOC117597073 LOC108267227,LOC108267226 other upstream 2049385 23479965 ~ 23483850 (-)

Expression


Co-expression Network