bcl6b (LOC108267673)


Basic Information

Item Value
gene id bcl6b
gene name LOC108267673
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 13216900 ~ 13223130 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936247.2
AGTTGCCCTGGCCAGTTGTAATAAACATCTGAGAAGAGAGCACAGAAGTCTGTGTGTGGTTTGGATTGGCAGTGGTAGAGAGGGGTCACAAAGACACGGTGGTGTTTGTTCTCGTCCCTGCTGGTCGGGGTACGAGTAGGGAGCTGGTCTCCCCAAACAGATCCATCCAGAACTTTGTCTTCTGACCATTTCTAATACAGGACAATGAGCAAATTGCAGCTGGCTATGGAGGATTATCAGGGATCCACCAGACGTGACTTGGTGGTGGAGGTGCAGGGATATGTTAAGGAGTTTACACGCCACTCCAATGATGTTCTGCTCAATTTAAATGAGTTACGGCATCGCAACATCCTGACTGATGCCACACTTCTGGTGGGCAGTGCCAGGCTGCACGCCCACTGTGCAGTGCTCATAGCATGCAGTGGCTTCTTCTATTCCTTGTTCTCCCGCCACAAGACTAGTGCTGTGGGAGAAAGAGGGGTTTCCCTGTCTCTGCCAGAGGGGCTAGATGCGGGTAGTGTGGCATTGCTGCTGGACTTCATGTACACCTCCCGCCTTCCTCTCAGCCCTGGCACTGCTCCTGGTGTGCTCGCCGCTGCCACCTACCTGCAGATGGAGCATGTTGCTGACACCTGCCGAGCTTTTTTACAGAAGAGTGAAAAAGTCTGTGTAAGCCCTCCTCTGGTGGACCTGGCATCCAGAAACACCCATGTGAGTTTCACAGTGAGCCCTGGTGGCAGATCACCCCCAGCCCAtccctctttttcctcttccccTTCTAGACCTGCAGTGGACATGGAGGAGCCCCGCCCTGCCCGAGCcagGGTTCCTGGAGAGAGCTCGTCCTCAGTAGAGCCAGTGACATGGCAAAGTCCTGCTCCCAGCTCTGAATCATCAGCCCTATCTCCAAACACTCCATCTCCAGGCAGTCCCTGTCAGTCCAGAGGTCAGCCTAACTCACCGGCTGAGTCCAGTGGTTGTAGTGTTTCCCCTAAACTAAAGCCACGTTCTGAATCCAGACCTACCCCTGACCCTAAGGCCTGTAACTGgaagaaatacaaatatattgtCTTGAACCCTCTCTGTGCTACACCCATTAAAGAGGAAGGTCCAGGGGAGGAGCCGCACACTTTTGACCACTCCTCCTCTAGTGATAGGGCAGACGTAACACCCAAACTGTCCGATGAGGCATGGTCAACTGCTGGACATGGGCTGAATGATATacAAACGCCCTTCACAGCCTACCATGGACTCTCACCACACACAGCAGACACATACAAGGGACCACCAGCAGCTGTTGCCCGGGATAACAGAGACCTCTGCTCTCTGTATCAGCGCCCATGTCCCCCTGTGTTAGATGGCACCAAACAGAATGCCCATCCTTTTGGGAAGCTTCCAGTCAAGCTTGAGAATCACTCCCCAGTGATTTGTTATTCAGGAAATCAAGGGAGCACAAAGCCTATCTGCTCAGGAGAAAAGCCATATCGCTGTAATGTGTGTGGGGCGCAGTTTAATCGTCCGGCCAATTTGAAGACCCACTCCCGCATTCActcaggagagaagccgtatcgcTGTGACACCTGTGGTGCTCGATTTGTCCAGgtggCTCACCTGCGTGCCCATGTTCTGATCCACACTGGGGAGAAGCCGTACCCATGTCACACCTGTGGAACACGTTTCCGTCACCTGCAGACGCTGAAGAGCCACCTGCGCATTCATACAGGGGAGAAACCATACAGCTGTGAGAAGTGTGATCTGCGTTTCCGTCATAAGAGCCAGCTGAGGCTACATCTGAGGCAGAAGCATGGCGCTGTTACCAACACCAAGATCCGCTATAAAGTCCTGGCCGACCCATACCAGCCTGGACCAGCCATACTGCAGGCCTCCTGAAGGATCTAATACAATACTCACCCGTTTTACAATGTCCTGTTGTACCCTGGAAAGGTTTAGGGTCTGATATAATCTCTTCTAGTATTCCAATTAAGTTTATTATACTCACATAATTCCCAGGTTAGCACTCTGTAACTTCTGATATTGGCAAAGGCTTACAAAATTGCTCCATATGAAGAGAAAGGCATGGAAACTACTACTAGGCTTTTATGCTTGTTTTACAAAATGAGGTGGAGTGTTGCATTCCTGGAAAGCATATATACATCAGAACAGACAAACACCTTCCAGAAATGCTGTTCTCCTGCACTAGACGTGCTGACTTTTATTAATTATCATGCTTttctactttattatttatttgcctgGCTCAGCGTTCTCTTTCTCACTtggtttttaaatatatatatttggaaaaagacagggacagcacattttaaaaaaagaacaaaaatgatataaatattagtTTCTGATACATCTctcaaaaaattattaaattaatattactgTTAATCAACAGTAAACTTCCAGTTATCTACAGCTGTCTCTTGGAGTAACATAACTATgagtaatatttcatttcagtagATACTAATTCCTAAAGCAATGTAAATGGTTTGTGGAGGGGTGTGTTAGGAGTTTAGATGCATAACAAAGAAGTACAAGTAAAGTTGGGTAAGAAAtgaatatcattttttttaaaaatgggtgAGATCTTGAAAAGCGAATTGATGGAAAGGAAAAGTGTGATGAAGCGATGTGTATGTTTGAGaaggataaagaaagagagTTTGATTGAGATAATGTGAAATTGTATCATTTTGTCTGTGAAGTGGAAGAACGTCTATGCAAGTAGGAAAAGCTATGCTTATGGGAATTAGTCATATTTGGATTCATATTTGGTATAGacgtttgtttttctttttgagtATAGAGAACAATTTTTGGTTGGCTGTATCTCAGTAAATCAGTGGCTGTCATGTTCTCATACTTAGTGCATGTGAGAATGACAGCCTAAACATGTAATTTTCTAGTTACTTACGCACTAACAATTCTTTTGCCCTACTAATCTAAAAAGGCCTGGAGCCTATTTATTTAGTAACTCTACTATTACTATAAATGCTGTCTTGAATCCTGGATTTGGTAGGAACTATAATTTTGATTGAAGGAAACGTATATTTTGTTGATGGTGTTGATAGTCTAGGAGTCCAAGCAGGCCAAGGACTCAAATAAGCCAGACAGAATAAATGTAAAGGTTGATGCTGTGGATGAAGATATTATTGAGTTTGTCAAATCTAAAGTTCTTTTGCTGGACAAAGACAAgacttattttatataaattaaaactaaattaatttcttttaattggAAA

Function

NR:

description
B-cell CLL/lymphoma 6 member B protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936247.2 True 3262 mRNA 0.45 12 13216900 13223130

Neighbor

gene id symbol gene type direction distance location
LOC113540725 NA coding downstream 12438 13204273 ~ 13204462 (-)
pop7 pop7,LOC100709557,LOC107659735,LOC100707405,LOC102794197 coding downstream 480382 12734646 ~ 12736518 (-)
ufsp1 ufsp1 coding downstream 504056 12710191 ~ 12712844 (-)
LOC113540289 LOC108267594 coding downstream 509856 12697759 ~ 12707044 (-)
LOC117597087 LOC108267594 coding downstream 525062 12680361 ~ 12691838 (-)
sst5 LOC108267674 coding upstream 19539 13242669 ~ 13243766 (-)
tm4sf5 tm4sf5,LOC108442834,LOC108410825 coding upstream 41141 13264271 ~ 13267825 (-)
si:ch73-335l21.4 LOC108268348 coding upstream 165203 13388333 ~ 13389965 (-)
ntn5 LOC108267835 coding upstream 282611 13505741 ~ 13521526 (-)
cnpy4 cnpy4 coding upstream 304756 13527886 ~ 13533264 (-)
LOC113540062 tmem88,LOC107719780,LOC103146602,LOC107597044,LOC107664278,LOC106935498,LOC103375639 non-coding downstream 2664 13208453 ~ 13214236 (-)
G63787 NA non-coding downstream 16991 13199019 ~ 13199909 (-)
G63789 LOC102193867,LOC104942379,LOC100699848 non-coding downstream 21019 13194062 ~ 13195881 (-)
G63817 NA non-coding downstream 99960 13116073 ~ 13116940 (-)
LOC117597210 NA non-coding downstream 265805 12941670 ~ 12951095 (-)
G63793 trip6 non-coding upstream 9603 13232733 ~ 13234948 (-)
LOC113540618 NA non-coding upstream 28847 13251977 ~ 13259368 (-)
G63866 slc16a13 non-coding upstream 55406 13278536 ~ 13279774 (-)
G63913 NA non-coding upstream 195182 13418312 ~ 13418530 (-)
G63920 NA non-coding upstream 219399 13442529 ~ 13442830 (-)
tmem256 tmem256,LOC107659713,LOC107564775,LOC107560291 other downstream 727338 12484723 ~ 12489562 (-)
LOC113539775 NA other downstream 939231 12272218 ~ 12277669 (-)
si:dkey-165a24.9 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC105903083,LOC107572570,LOC107753961,LOC107659726,LOC107588125 other downstream 967146 12246962 ~ 12249754 (-)
htr2cl1 LOC108267122,LOC108434824 other downstream 1249997 11862625 ~ 11966903 (-)
LOC117597110 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108261673,LOC108267241,LOC108267937,LOC108267740,LOC108267935 other downstream 1681657 11524826 ~ 11535243 (-)
acap1 acap1,LOC107731905,LOC107683535,LOC107595305,LOC107675497 other upstream 62869 13285999 ~ 13308478 (-)
zgc:194312 LOC108267841 other upstream 212926 13436056 ~ 13440520 (-)
G64436 NA other upstream 1009679 14232809 ~ 14243681 (-)
tbc1d19 tbc1d19,LOC107660707 other upstream 2656341 15879471 ~ 15904355 (-)
smim20 NA other upstream 2750449 15973579 ~ 15991985 (-)

Expression


Co-expression Network