and2 (LOC108267411)


Basic Information

Item Value
gene id and2
gene name LOC108267411
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23318535 ~ 23322611 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936264.2
ttaatgatCATGGACCTCCTTAAAAATGTTGCTCTCCACTGTCCACAGGGTCTTCAGGGGAGAAGAGAGCTTGGATGTAGAGTTGATTACGTTCCCCCTGCCTGCCAGGAGCTTAGACCACTTGGGCTGAAACAGGAGCTGTAAAAATGGCCAGAATCAAGCTGTCTTTGCTGTTTGCTGGCATTGTGCTTGCAGTCATCTTAATGCCAGATTTTCTTGGGGCTGGTCCAGTGGGGCACCCAGAACAGGAAGAAGTAGCTGAGGTTGCTGAAGAGAAGCCAGCCATCTCATTAGCCCTGAAGAAACTGACACGTAATAAGAGGAATGCTGTTGCTTACTACAAACGCTTGCCTGAATTCTGGGCCTGGTACAAGTACTACATGAGCACCCACAACCAGGAGGGAATTGAGAGTTTGGACCAGCTCTACTTGATCTACTTGCAGAACAAGCACCGGGTTGATGGGGACAATTCCTACAAACATTACCTCACCCACCTGAGTGAGGTCTACAAGGCCTGTGCTAAATCAGATGACCCTGACTGCATTCCAGAGTACACCAGCAAGCCCACGGCTAAGATTGTTTTGCCTGCTGCCATGAAGCAAGCTCCAGTGAATGTGTGTAACCCATATCTTGATCCCTACTGTATCTTTTCTGTAGGTCCTCAAGCAGCACCTGAGGagcctcctcctgctcctgtttCAGTTAAATCCCCCAGTCCCCTTCTGCTCCCCTCTCCCATAAGAACCCCATCTGGATACCATTACTATGCCCCAGCATTACAACCTTTTCTTTCAAGTGAACAGAGAGCTGAGCTGCTCCGGATCTGCAGCCCGTCTGATGTAGAGTGCTTGCAGTATCACTTGCGTGCTGCTTATGGTTATAGACCTGCTCTTACCCCAGTGCCTTCCTATGCCTACCTGGGATGTGACCCATCTAAAGACCCTTACTGCAGGCCCACAATGCTAGCCAAGAATCCGTCAGGTCTGTATCATGTATACCCTCATTGTAATCCCGCTGTTGACCCTCTCTGTGCCAGTAATATAGCCCCAGCTGCCCAAAGTGCAGAGGAGGCTCCTAGGGAGCAGCACTGCAACCCGCTGTTTGAAACGGGGTGCAACCCACTCACTGCTAACAGGCTGGTCACACTTAAGGCTCCTGTGCTGCAGTATGTGCCACAAGGTGAGCTGACTCCCCTCCACCTAGCTGccttaatgaaaccattaccgATTAGCCAACAAGCAAAGTCCAGTGCCACAGAATGCCATCCATATGACCCCAGCTGTAGCAATTTTTCCCCTCCGGCTTCCATTGAGGCATTCGAGAACATGCAGGGTGGCATCATCTTACCCCATCCTGACTGTGATCCTGAAACTGACTACAACTGCCGTCTGCGCCGTGCAGGACCCACAGACAACAAAAAGGCAGCTGAGGATCCCAAGGATGAGCTGGAACGTGGTGATGACACCAGCAACGCCAATGTAGCACCACAGTACCAGGTCTCACGATTTGAGGATTTCCTGAGGGGATACCTGGGTCACTATAAGAAATAAGAGGACATGCCATTATCTGAAAAGCTTTAACACTCAACCCAAGTGTAGTGTTTCAAAAGGAACTCACAAACATGCTAAAGTCAACAGAGACCTCCTGGTAATGAAGCCAGAGCCCACACTTCAGAACAGTTCAGAACAGGAGAAGAAGGCCTGTGCTTTATAGGGATAATTTCAAATCAGTACTTTCTGAATTTATGTGTATTGCAAACTCTGAGGGGTTTATTTGAATATGGGCAATGCACTTTGATTTTCTAGTCAAactattatttttctgttttgtacaTTGTAATTCTAAGTCCATGCTCTCCAGAATGAAGTGCAAGACTGGCTTGCCAAAACTGGAATTCAATTTATTCCTTCAAATTTACAATACACCATCCATGTTTGAATTGTGAATGATATTTCATTACAGCCCTTTGAAGATGCTCAGTTTTTTAATATCACTTATTGCATGAATAAAGTTATTAAATCAAAA
>XM_026936266.2
CCTTAAAAATGTTGCTCTCCACTGTCCACAGGGTCTTCAGGGGAGAAGAGAGCTTGGATGTAGAGTTGATTACGTTCCCCCTGCCTGCCAGGAGCTTAGACCACTTGGGCTGAAACAGaaatctaaTCCACAGAGCTGTAAAAATGGCCAGAATCAAGCTGTCTTTGCTGTTTGCTGGCATTGTGCTTGCAGTCATCTTAATGCCAGATTTTCTTGGGGCTGGTCCAGTGGGGCACCCAGAACAGGAAGAAGTAGCTGAGGTTGCTGAAGAGAAGCCAGCCATCTCATTAGCCCTGAAGAAACTGACACGTAATAAGAGGAATGCTGTTGCTTACTACAAACGCTTGCCTGAATTCTGGGCCTGGTACAAGTACTACATGAGCACCCACAACCAGGAGGGAATTGAGAGTTTGGACCAGCTCTACTTGATCTACTTGCAGAACAAGCACCGGGTTGATGGGGACAATTCCTACAAACATTACCTCACCCACCTGAGTGAGGTCTACAAGGCCTGTGCTAAATCAGATGACCCTGACTGCATTCCAGAGTACACCAGCAAGCCCACGGCTAAGATTGTTTTGCCTGCTGCCATGAAGCAAGCTCCAGTGAATGTGTGTAACCCATATCTTGATCCCTACTGTATCTTTTCTGTAGGTCCTCAAGCAGCACCTGAGGagcctcctcctgctcctgtttCAGTTAAATCCCCCAGTCCCCTTCTGCTCCCCTCTCCCATAAGAACCCCATCTGGATACCATTACTATGCCCCAGCATTACAACCTTTTCTTTCAAGTGAACAGAGAGCTGAGCTGCTCCGGATCTGCAGCCCGTCTGATGTAGAGTGCTTGCAGTATCACTTGCGTGCTGCTTATGGTTATAGACCTGCTCTTACCCCAGTGCCTTCCTATGCCTACCTGGGATGTGACCCATCTAAAGACCCTTACTGCAGGCCCACAATGCTAGCCAAGAATCCGTCAGGTCTGTATCATGTATACCCTCATTGTAATCCCGCTGTTGACCCTCTCTGTGCCAGTAATATAGCCCCAGCTGCCCAAAGTGCAGAGGAGGCTCCTAGGGAGCAGCACTGCAACCCGCTGTTTGAAACGGGGTGCAACCCACTCACTGCTAACAGGCTGGTCACACTTAAGGCTCCTGTGCTGCAGTATGTGCCACAAGGTGAGCTGACTCCCCTCCACCTAGCTGccttaatgaaaccattaccgATTAGCCAACAAGCAAAGTCCAGTGCCACAGAATGCCATCCATATGACCCCAGCTGTAGCAATTTTTCCCCTCCGGCTTCCATTGAGGCATTCGAGAACATGCAGGGTGGCATCATCTTACCCCATCCTGACTGTGATCCTGAAACTGACTACAACTGCCGTCTGCGCCGTGCAGGACCCACAGACAACAAAAAGGCAGCTGAGGATCCCAAGGATGAGCTGGAACGTGGTGATGACACCAGCAACGCCAATGTAGCACCACAGTACCAGGTCTCACGATTTGAGGATTTCCTGAGGGGATACCTGGGTCACTATAAGAAATAAGAGGACATGCCATTATCTGAAAAGCTTTAACACTCAACCCAAGTGTAGTGTTTCAAAAGGAACTCACAAACATGCTAAAGTCAACAGAGACCTCCTGGTAATGAAGCCAGAGCCCACACTTCAGAACAGTTCAGAACAGGAGAAGAAGGCCTGTGCTTTATAGGGATAATTTCAAATCAGTACTTTCTGAATTTATGTGTATTGCAAACTCTGAGGGGTTTATTTGAATATGGGCAATGCACTTTGATTTTCTAGTCAAactattatttttctgttttgtacaTTGTAATTCTAAGTCCATGCTCTCCAGAATGAAGTGCAAGACTGGCTTGCCAAAACTGGAATTCAATTTATTCCTTCAAATTTACAATACACCATCCATGTTTGAATTGTGAATGATATTTCATTACAGCCCTTTGAAGATGCTCAGTTTTTTAATATCACTTATTGCATGAATAAAGTTATTAAATCAAAA
>XM_034303435.1
TCCTTAAAAATGTTGCTCTCCACTGTCCACAGGGTCTTCAGGGGAGAAGAGAGCTTGGATGTAGAGTTGATTACGTTCCCCCTGCCTGCCAGGAGCTTAGACCACTTGGGCTGAAACAGaaatctaaTCCACAGAGCTGTAAAAATGGCCAGAATCAAGCTGTCTTTGCTGTTTGCTGGCATTGTGCTTGCAGTCATCTTAATGCCAGATTTTCTTGGGGCTGGTCCAGTGGGGCACCCAGAACAGGAAGAAGCTGAGGTTGCTGAAGAGAAGCCAGCCATCTCATTAGCCCTGAAGAAACTGACACGTAATAAGAGGAATGCTGTTGCTTACTACAAACGCTTGCCTGAATTCTGGGCCTGGTACAAGTACTACATGAGCACCCACAACCAGGAGGGAATTGAGAGTTTGGACCAGCTCTACTTGATCTACTTGCAGAACAAGCACCGGGTTGATGGGGACAATTCCTACAAACATTACCTCACCCACCTGAGTGAGGTCTACAAGGCCTGTGCTAAATCAGATGACCCTGACTGCATTCCAGAGTACACCAGCAAGCCCACGGCTAAGATTGTTTTGCCTGCTGCCATGAAGCAAGCTCCAGTGAATGTGTGTAACCCATATCTTGATCCCTACTGTATCTTTTCTGTAGGTCCTCAAGCAGCACCTGAGGagcctcctcctgctcctgtttCAGTTAAATCCCCCAGTCCCCTTCTGCTCCCCTCTCCCATAAGAACCCCATCTGGATACCATTACTATGCCCCAGCATTACAACCTTTTCTTTCAAGTGAACAGAGAGCTGAGCTGCTCCGGATCTGCAGCCCGTCTGATGTAGAGTGCTTGCAGTATCACTTGCGTGCTGCTTATGGTTATAGACCTGCTCTTACCCCAGTGCCTTCCTATGCCTACCTGGGATGTGACCCATCTAAAGACCCTTACTGCAGGCCCACAATGCTAGCCAAGAATCCGTCAGGTCTGTATCATGTATACCCTCATTGTAATCCCGCTGTTGACCCTCTCTGTGCCAGTAATATAGCCCCAGCTGCCCAAAGTGCAGAGGAGGCTCCTAGGGAGCAGCACTGCAACCCGCTGTTTGAAACGGGGTGCAACCCACTCACTGCTAACAGGCTGGTCACACTTAAGGCTCCTGTGCTGCAGTATGTGCCACAAGGTGAGCTGACTCCCCTCCACCTAGCTGccttaatgaaaccattaccgATTAGCCAACAAGCAAAGTCCAGTGCCACAGAATGCCATCCATATGACCCCAGCTGTAGCAATTTTTCCCCTCCGGCTTCCATTGAGGCATTCGAGAACATGCAGGGTGGCATCATCTTACCCCATCCTGACTGTGATCCTGAAACTGACTACAACTGCCGTCTGCGCCGTGCAGGACCCACAGACAACAAAAAGGCAGCTGAGGATCCCAAGGATGAGCTGGAACGTGGTGATGACACCAGCAACGCCAATGTAGCACCACAGTACCAGGTCTCACGATTTGAGGATTTCCTGAGGGGATACCTGGGTCACTATAAGAAATAAGAGGACATGCCATTATCTGAAAAGCTTTAACACTCAACCCAAGTGTAGTGTTTCAAAAGGAACTCACAAACATGCTAAAGTCAACAGAGACCTCCTGGTAATGAAGCCAGAGCCCACACTTCAGAACAGTTCAGAACAGGAGAAGAAGGCCTGTGCTTTATAGGGATAATTTCAAATCAGTACTTTCTGAATTTATGTGTATTGCAAACTCTGAGGGGTTTATTTGAATATGGGCAATGCACTTTGATTTTCTAGTCAAactattatttttctgttttgtacaTTGTAATTCTAAGTCCATGCTCTCCAGAATGAAGTGCAAGACTGGCTTGCCAAAACTGGAATTCAATTTATTCCTTCAAATTTACAATACACCATCCATGTTTGAATTGTGAATGATATTTCATTACAGCCCTTTGAAGATGCTCAGTTTTTTAATATCACTTATTGCATGAATAAAGTTATTAAATCAAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC103353068

GO:

id name namespace
GO:0051216 cartilage development biological_process
GO:0033333 fin development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936264.2 True 2025 mRNA 0.47 5 23318535 23322611
XM_026936266.2 False 2022 mRNA 0.47 6 23318535 23322594
XM_034303435.1 False 2020 mRNA 0.47 6 23318535 23322595

Neighbor

gene id symbol gene type direction distance location
e2f5 LOC108268108,LOC108437220 coding downstream 26537 23285036 ~ 23291998 (-)
si:ch211-106h4.9 LOC108267629 coding downstream 55238 23230050 ~ 23263297 (-)
mrc1b LOC108268341 coding downstream 144156 23150126 ~ 23174379 (-)
clul1 clul1 coding downstream 268422 23041108 ~ 23050113 (-)
adcyap1b LOC100304507 coding downstream 327919 22986661 ~ 22990616 (-)
nol7 NA coding upstream 53845 23376456 ~ 23382888 (-)
LOC113540008 NA coding upstream 86803 23409414 ~ 23418890 (-)
LOC117597115 NA coding upstream 107689 23430300 ~ 23442743 (-)
LOC113540011 NA coding upstream 124194 23446805 ~ 23463725 (-)
LOC113540113 LOC108267226 coding upstream 143806 23466417 ~ 23505181 (-)
G69503 NA non-coding downstream 39753 23278575 ~ 23278782 (-)
LOC117597081 NA non-coding downstream 44921 23272162 ~ 23273614 (-)
G69320 NA non-coding downstream 263152 23054514 ~ 23055383 (-)
G69254 NA non-coding downstream 509286 22808906 ~ 22809249 (-)
G69248 LOC108268132,LOC108440660,LOC107664077,LOC107746915 non-coding downstream 512627 22803386 ~ 22805908 (-)
G69551 NA non-coding upstream 74053 23396664 ~ 23397963 (-)
LOC113540115 NA non-coding upstream 130622 23453233 ~ 23454221 (-)
G69649 NA non-coding upstream 271720 23594331 ~ 23594544 (-)
G69691 NA non-coding upstream 328440 23651051 ~ 23651866 (-)
G69916 NA non-coding upstream 599495 23922106 ~ 23922538 (-)
lrrcc1 lrrcc1 other downstream 11601 23292048 ~ 23306934 (-)
LOC113540019 LOC108268143 other downstream 682447 22629615 ~ 22636088 (-)
G68760 NA other downstream 1383366 21934526 ~ 21935169 (-)
LOC113539989 LOC108436138 other downstream 1947525 21354619 ~ 21371010 (-)
G68462 NA other downstream 1989285 21326046 ~ 21329250 (-)
retreg1 fam134b other upstream 8405 23331016 ~ 23346573 (-)
LOC117597073 LOC108267227,LOC108267226 other upstream 157354 23479965 ~ 23483850 (-)
G69592 LOC108267226,LOC108267227 other upstream 170768 23493379 ~ 23493919 (-)
LOC117597074 NA other upstream 172424 23495035 ~ 23495897 (-)
LOC117597075 LOC108267226,LOC108267227 other upstream 173346 23495957 ~ 23497021 (-)

Expression


Co-expression Network