rbm4.3 (rbm4.3,rbm4b,LOC108267461,LOC107576930,LOC106577685)


Basic Information

Item Value
gene id rbm4.3
gene name rbm4.3,rbm4b,LOC108267461,LOC107576930,LOC106577685
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12195517 ~ 12199352 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936297.2
taaacaatatagtACGGAAGTATGCTTTGTGACGTAGACGCACACTGATTGGCTGAGCGtgtgagtgggcggggctaagcCCTGCAGATTTAAGACGACAACTGTTCCTGTTTTTTCTCATTGTGGCGTGGGGGAAGTGtgtgtttcaggctcTGCTTTCTGTTCACCCACACAATGGTGAAGATCTTCGTTGGGAACCTGCCTCCCCAGGCAGAGAGCGATGAAATCAAAGCCCTGTTCTCTCAGTATGGCACCGTCACAGAGTGCGCCATCATCAAGAACTTTGCCTTCGTTCACATGGACGATCGCAAGAACGCTACAAAGGCCATACGCAATCTCCATTTGTACAAGCTACACGGCACCCCCATTAATGTTGAGGCCAGCCACGGCAAAAACCAGGGCCCGGTCAAGCTGCATGTGGCCAATGTTGAGAAGGGTGCAGAGGATGAGCTCAGAGCTCTGTTTGAAGAGTATGGAACAGTAACGGAGTGTTCCATTATAAAAAACTTTGCGTTTATACACATGAACAACTATGACGAGGCCATGGATGCCATTAAGGGTTTGGACAACTCTGATTTCCAAGGCAAAAGGATTCACGTCCAGCTATCCAAAAGCCGGCCGCGAGGAGATGAGGATGGTTACGGTCCTCCGGAAAGGGGGGGCTATTGGCCTCCCCGTTTCCCCGGTGACCACCCACAGCCAGGCCCTCCTGGTTTTGGCAGAGGCCGCTTTGGTCCTCCTGGTTACCCCCCTGCCCCGCCTCCAccccctccacctccacccAGACGCCCCCCCTTTCCTGGGGGTGGCTATGGTGGTGACCGTGATGGCAATGGGGTAGTGGATTATTATGAGAAATATCGAGCCCGTCCTTATGGCATGTCCTCGTACGAGGATCGCCGTATGGGCGGCATTCCACCACCCCCACCACCCCCGTCAGGCATGATGAGAGAGCGCATGCCCCCTTCCAGTCTTGACCCCTATGATCGACGCCCCCTCCCACCCCCACCGTCTTCGTTTTACCGCGATCGTAGTCCCATCGGAAGGGCACCGCCACCCCTCCAGCGTCTGCTGGAAACGGCTATTCATACGAGCGCTCCCGTCTCTCCCCTCTTTCCATGTCTCGGAACCCAATGTACAATGCGCCTCGTTCCAGGGACCCCTACAGTGACAGGGTGCCTCCGCCACCACCTGCGCGCTATACATACTAAAGTGAATCTCTGCACTTGTGTACCCAAGGTGTAATTTATTCGACAAGATCGTCGTCGTTGTCTCCTGGTGCACATGACGCGATTCGCCCCTCGTCTGACGGAGCGCGTTTCGTTTGCCTGCGCCTCGCTTATCAGAAGAGTTCTAGTGCGGACTTCACGCTTTAAACTTAAATGATTTTTACCCGACTCAATTTCGTCCTCTTGCTTAAACTGTAATAACTTGCTCATTCTGTTCGGCTTGTTTTTTACTGTATAGAGTTCAGTAGGTTATTGGACTGAAAGCATCAAGCAGACAAGCTAAAAGTTTTAGATCTTGTCAAGCCGATAACTCTTAAAGCTGTTATTTGTTCAGACTTGTGTACATTTTGTGACTTTTCTGTGAGATCAAAacgttttgttttatttgaacCCCTCCCCTCTTTTGTTTGTTCAACCCTGTAACAACGTTTGAACAGTGCCACGTCTTTAGAATTAATGGGTACACACGTGCGCCTTGCGATCTAAACATTTAATAGATCAGCAATAATTGCGACTACTGTTCAGTTGAGGTTTTTCCTTTTAGATTGAAATTTAGTCAGAATGGCATCCCCTCTAATACGATGTACTCTTTTTAGGGAtcgtttcttttttaaataaaaaatctgacaCTAATGCGtcgatttgtttatttttatttgtcttcctTTCCCTACCTCATTTAAGCATAAACTAAATAATCCAGTGTGTCAGTTTGAAGATAAATGCGTCACTTGAGCGTGCGTGAGAAGTGCAACACTGTTGGAACTTCCTGCTAGCTGTTTCTTGGTAATGCAGCATATTGCAGTGGAACTGGCAATATATCACTTATGACGCCCTGTTAAGCGATGCTCGCTATTAGATTGTGCCCCTCGTATCCCCCTCTAAACCACCTGTTTCCACATGCCTAACAGCCAGATCTAACATTCTCTCTGAATGCTGTAAGCCTGAATTGTGATTAACTTGCTCATTGACAAAGTTTAAGCACTTTAAAACAGTCAGCCCTTCATGTAAATAAAAGGCTTGAATGTTGACTGACACAAACTCAGGTAAGTTGATTGGTGTTTATAATGATCTTGCATGTCTTTTGAAGTTGCAAGTGGAAGAAGAtatgagagaaaagaaataaggCTGTTGTATAACAGGAGTTCTCAGGAAACTTAAATAAGGGTAGAGATTTTGTTGgaagttctttaaaaaaaaaaaaaa

Function

symbol description
rbm4.3 Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be active in nuclear speck. Orthologous to human RBM4 (RNA binding motif protein 4).
rbm4b Enables RNA binding activity. Predicted to be involved in entrainment of circadian clock by photoperiod; mRNA splicing, via spliceosome; and regulation of gene expression. Predicted to act upstream of or within positive regulation of gene expression. Located in cytosol and nucleoplasm. Part of protein-containing complex.

NR:

description
PREDICTED: RNA-binding protein 4.1-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936297.2 True 2435 mRNA 0.47 5 12195517 12199352

Neighbor

gene id symbol gene type direction distance location
LOC113540082 LOC108267460 coding downstream 834 12190822 ~ 12194683 (-)
rbm4.1 LOC108267459,LOC106608592 coding downstream 6070 12185524 ~ 12189447 (-)
sf1 sf1,LOC107753954,LOC107691964,LOC107562691,LOC107588130 coding downstream 13255 12170525 ~ 12182262 (-)
pygmb pygmb,pygm,LOC108267457,LOC108434859 coding downstream 27416 12150419 ~ 12168101 (-)
clcn5b LOC108267828,LOC108434858,LOC107557080,LOC107715429,LOC107733513 coding downstream 47025 12125821 ~ 12148492 (-)
ponzr6 LOC108267463 coding upstream 13635 12212987 ~ 12221939 (-)
fxr2 fxr2,LOC108267464,LOC108434865,LOC107750766,LOC107753958 coding upstream 28069 12227421 ~ 12242773 (-)
ugt5g1 LOC108268336 coding upstream 53893 12253245 ~ 12256515 (-)
LOC113539944 NA coding upstream 61384 12260736 ~ 12263489 (-)
ponzr4 ponzr4,LOC107572169,LOC107753991,LOC107659716,LOC107572567,LOC108267307,LOC108434828,LOC103036765 coding upstream 64629 12263981 ~ 12265953 (-)
G63174 LOC108268320,LOC103041464,LOC108410411,LOC105029413,LOC107562848,LOC107691962,LOC106578044 non-coding downstream 72507 12067332 ~ 12123010 (-)
G63062 NA non-coding downstream 191198 12004007 ~ 12004319 (-)
G63058 NA non-coding downstream 222570 11972711 ~ 11972947 (-)
G63031 NA non-coding downstream 297416 11897845 ~ 11898101 (-)
G63015 NA non-coding downstream 327814 11867450 ~ 11867703 (-)
G63219 NA non-coding upstream 126108 12325460 ~ 12325671 (-)
G63267 NA non-coding upstream 155040 12354392 ~ 12355772 (-)
G63502 NA non-coding upstream 468089 12667441 ~ 12670500 (-)
G63555 NA non-coding upstream 510277 12709629 ~ 12709841 (-)
G63578 NA non-coding upstream 568597 12767949 ~ 12797341 (-)
htr2cl1 LOC108267122,LOC108434824 other downstream 228614 11862625 ~ 11966903 (-)
LOC117597110 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108261673,LOC108267241,LOC108267937,LOC108267740,LOC108267935 other downstream 660274 11524826 ~ 11535243 (-)
si:dkey-183c6.7 LOC108267942 other downstream 779620 11402027 ~ 11415897 (-)
LOC113540328 LOC108267738,LOC108267931,LOC108267739,LOC108267932,LOC108267933,LOC108267740,LOC108261673,LOC108267241,LOC108267937,LOC108267929 other downstream 835473 11266384 ~ 11360044 (-)
si:dkey-165a24.9 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC105903083,LOC107572570,LOC107753961,LOC107659726,LOC107588125 other upstream 47610 12246962 ~ 12249754 (-)
LOC113539775 NA other upstream 72866 12272218 ~ 12277669 (-)
tmem256 tmem256,LOC107659713,LOC107564775,LOC107560291 other upstream 285371 12484723 ~ 12489562 (-)
acap1 acap1,LOC107731905,LOC107683535,LOC107595305,LOC107675497 other upstream 1086647 13285999 ~ 13308478 (-)
zgc:194312 LOC108267841 other upstream 1236704 13436056 ~ 13440520 (-)

Expression


Co-expression Network