LOC113540113 (LOC108267226)


Basic Information

Item Value
gene id LOC113540113
gene name LOC108267226
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23466417 ~ 23505181 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936355.2
TGACCTGGGTTAATGAGAAATTCATTCCAGAGTAGTAAACAGTGtttactgtataaaaataaaggGGTTTTGTTCAGTAATAAGGAAATAACTTTATTCAAAGAAGAAAGGGTGAGTCTTGGGCATAAAGTGTTTAAGGTAAACATTCCCTGAAATTTAAGCTGTGTGAGTAGTGCTGCAACATTTCAGAGGGTCACACATACCAGTGTGTTAAATTAACCACCAGGGTGGCACAATGTCTTGTATTATTGTTagtattgtttttcttttcttttcaacaATTAGAAAATAACAAATGCACCAAATCTGGGTTAATGCTGCCTGAAAAGGTGGCCAATCCCCACcccaggaaatgacatcattactttataaatgaaaagaCTCATGTTGCAAACTAGCATTAATACAAAAACAGGTGCAATAAAGTGTGCTGAACTGAGAGCGTACTTTATTTTACAGccaaatcaaaatgtttataGCCATATATGCCGTTCTCTTCTCTCTGGTCACAGAAGCTGTTCTGGGAGTGAAACTGGAGCAAAAAGATCTCTCCATGACTAAAGAGGAGGGCAAAAGTGTGTATATCAGCTGCAGTGTGACCGACTTATCCAGAGATTATGTCCACTGGTACCAAAAGAAAGAAGGTGAAGCTCTCACAAGGATCCTATATGTTGAAAGTGGAAGCAAACCTGTTCATGATAACCATCCTGATGCAAAGGACTTCGATGTGAGAATAAAGTCTGGTAATTATGATCTGAAGATAGCAAACCCGAAGAAAAGTCACTCAGCAGTTTATTACTGCGCCAGCTGGGACAGCACCGGGGTGAAAGTCTTCGGCTCAGGGACAAGACTTTATGTCACAGacaaacaaaagaaaacgcCTACAGTATCTGTGTACCCAGTATCCAACGAGCAGGCGAATGGAAAGCGTGTACTGCTGTGCCAGGCGCAAGGCATGTTCCCAGACTTGGTGAAATTCACATGGTGGGATCCAAATGGAAAAGAAGTGCAGGCATCACAGGAAGGGTATGAGCTGCTGGAGCAAAGAGATGATCAGGAAGTCCGAATAACCAGCATGCTCATTGTACACCAAAGCAAAGTATCATCATACAATTACAAGTGCCTCGTCAAACATGAGGATGGAGAGCAGAGTCCAACCATTCCAGAAGCTAAAAAACCTGTTGCATCCACGTGCTCACCCCTACGAAAAGCAGAACAACAAGAAGAAGAGCAAGAGGAAAATCTAActtctgGTTTGTTTGAGCTCAGCCGCAGTCTGTATCTGTTCAGCGTGACGTATGTGATACTGCTGGTGAAAAACGTGTTGTATTTCTGCACTGTCTCTGTCTTACTGTACAAGAGGAATTCTGCTAACAAGGACATGCTTAGAGGCAAAGCTCGCTGATCGATTTTGTATTCTTGTTAGTTAAGAGTTTTGTTGAAGAGTGAAGTTTTGTTTAActctattgaaaaaaaaaaaaatctatagtAATCCAGTTTGTTAAACATCTGTTACTGTTAATCATCTCATTCTGTTCATATTTGTGATGTTTCTAATTGCTGCTATTATATATCCTTTCATGCTGCAATCTTCTTTCAGtaggaaattaaaaacaataacaacaacaacaacaacaataacaacaacaacaacagcaataacaaaACCCCACTGTGGACTGTTTGGGTGGCAGCATTAGCTTTCTCTAGTCCTTTAGTAGAAATAACAGACATAAATCTTGGAAATTTTCATTTGTTCTACTCTGTACTATGCTCTGTGGTATTCTGTTTCTTTAGCGCTCTTCTTATGACATTGTgctctgtaataataaaatgttttcat
>XM_034303623.1
TGACCTGGGTTAATGAGAAATTCATTCCAGAGTAGTAAACAGTGtttactgtataaaaataaaggGGTTTTGTTCAGTAATAAGGAAATAACTTTATTCAAAGAAGAAAGGGTGAGTCTTGGGCATAAAGTGTTTAAGGTAAACATTCCCTGAAATTTAAGCTGTGTGAGTAGTGCTGCAACATTTCAGAGGGTCACACATACCAGTGTGTTAAATTAACCACCAGGGTGGCACAATGTCTTGTATTATTGTTagtattgtttttcttttcttttcaacaATTAGAAAATAACAAATGCACCAAATCTGGGTTAATGCTGCCTGAAAAGGTGGCCAATCCCCACcccaggaaatgacatcattactttataaatgaaaagaCTCATGTTGCAAACTAGCATTAATACAAAAACAGGTGCAATAAAGTGTGCTGAACTGAGAGCGTACTTTATTTTACAGccaaatcaaaatgtttataGCCATATATGCCGTTCTCTTCTCTCTGGTCACAGAAGCTGTTCTGGGAGTGAAACTGGAGCAAAAAGATCTCTCCATGACTAAAGAGGAGGGCAAAAGTGTGTATATCAGCTGCAGTGTGACCGACTTATCCAGAGATTATGTCCACTGGTACCAAAAGAAAGAAGGTGAAGCTCTCACAAGGATCCTATATGTTGAAAGTGGAAGCAAACCTGTTCATGATAACCATCCTGATGCAAAGGACTTCGATGTGAGAATAAAGTCTGGTAATTATGATCTGAAGATAGCAAACCCGAAGAAAAGTCACTCAGCAGTTTATTACTGCGCCAGCTGGGACAGGGGGGTGAAAGTCTTCGGCTCAGGGACAAGACTTTATGTCACAGacaaacaaaagaaaacgcCTACAGTATCTGTGTACCCAGTATCCAACGAGCAGGCGAATGGAAAGCGTGTACTGCTGTGCCAGGCGCAAGGCATGTTCCCAGACTTGGTGAAATTCACATGGTGGGATCCAAATGGAAAAGAAGTGCAGGCATCACAGGAAGGGTATGAGCTGCTGGAGCAAAGAGATGATCAGGAAGTCCGAATAACCAGCATGCTCATTGTACACCAAAGCAAAGTATCATCATACAATTACAAGTGCCTCGTCAAACATGAGGATGGAGAGCAGAGTCCAACCATTCCAGAAGCTAAAAAACCTGTTGCATCCACGTGCTCACCCCTACGAAAAGCAGAACAACAAGAAGAAGAGCAAGAGGAAAATCTAActtctgGTTTGTTTGAGCTCAGCCGCAGTCTGTATCTGTTCAGCGTGACGTATGTGATACTGCTGGTGAAAAACGTGTTGTATTTCTGCACTGTCTCTGTCTTACTGTACAAGAGGAATTCTGCTAACAAGGACATGCTTAGAGGCAAAGCTCGCTGATCGATTTTGTATTCTTGTTAGTTAAGAGTTTTGTTGAAGAGTGAAGTTTTGTTTAActctattgaaaaaaaaaaaaatctatagtAATCCAGTTTGTTAAACATCTGTTACTGTTAATCATCTCATTCTGTTCATATTTGTGATGTTTCTAATTGCTGCTATTATATATCCTTTCATGCTGCAATCTTCTTTCAGtaggaaattaaaaacaataacaacaacaacaacaacaataacaacaacaacaacagcaataacaaaACCCCACTGTGGACTGTTTGGGTGGCAGCATTAGCTTTCTCTAGTCCTTTAGTAGAAATAACAGACATAAATCTTGGAAATTTTCATTTGTTCTACTCTGTACTATGCTCTGTGGTATTCTGTTTCTTTAGCGCTCTTCTTATGACATTGTgctctgtaataataaaatgttttcat

Function

NR:

description
PREDICTED: uncharacterized protein LOC108267226

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936355.2 True 1843 mRNA 0.39 6 23466417 23505181
XM_034303623.1 False 1840 mRNA 0.39 6 23466417 23505181

Neighbor

gene id symbol gene type direction distance location
LOC113540011 NA coding downstream 2692 23446805 ~ 23463725 (-)
LOC117597115 NA coding downstream 23674 23430300 ~ 23442743 (-)
LOC113540008 NA coding downstream 47527 23409414 ~ 23418890 (-)
nol7 NA coding downstream 83529 23376456 ~ 23382888 (-)
and2 LOC108267411 coding downstream 143806 23318535 ~ 23322611 (-)
LOC113540016 NA coding upstream 32247 23537428 ~ 23544732 (-)
amph amph coding upstream 41989 23547170 ~ 23583496 (-)
fam49ba LOC108267758,LOC106592588,LOC107713994,LOC107718035,LOC107657432,LOC107556887 coding upstream 253203 23758384 ~ 23782113 (-)
asap1a LOC108267580,LOC108437251 coding upstream 278917 23784098 ~ 23843304 (-)
ubtfl ubtfl,LOC108267581,LOC107718032 coding upstream 339863 23845044 ~ 23858386 (-)
LOC113540115 NA non-coding downstream 12196 23453233 ~ 23454221 (-)
G69551 NA non-coding downstream 68454 23396664 ~ 23397963 (-)
G69503 NA non-coding downstream 187635 23278575 ~ 23278782 (-)
LOC117597081 NA non-coding downstream 192803 23272162 ~ 23273614 (-)
G69320 NA non-coding downstream 411034 23054514 ~ 23055383 (-)
G69649 NA non-coding upstream 89150 23594331 ~ 23594544 (-)
G69691 NA non-coding upstream 145870 23651051 ~ 23651866 (-)
G69916 NA non-coding upstream 416925 23922106 ~ 23922538 (-)
LOC117597086 NA non-coding upstream 426152 23931333 ~ 23932235 (-)
G70025 NA non-coding upstream 633112 24138293 ~ 24138492 (-)
retreg1 fam134b other downstream 119844 23331016 ~ 23346573 (-)
lrrcc1 lrrcc1 other downstream 159483 23292048 ~ 23306934 (-)
LOC113540019 LOC108268143 other downstream 830329 22629615 ~ 22636088 (-)
G68760 NA other downstream 1531248 21934526 ~ 21935169 (-)
LOC113539989 LOC108436138 other downstream 2095407 21354619 ~ 21371010 (-)
LOC113540012 NA other upstream 8275 23513456 ~ 23514039 (-)
LOC117597116 NA other upstream 9193 23514374 ~ 23514935 (-)
LOC113540114 LOC108267227 other upstream 10518 23515699 ~ 23516359 (-)
LOC113540013 NA other upstream 11749 23516930 ~ 23517670 (-)
LOC117597117 NA other upstream 26057 23531238 ~ 23532016 (-)

Expression


Co-expression Network