sf1 (sf1,LOC107753954,LOC107691964,LOC107562691,LOC107588130)


Basic Information

Item Value
gene id sf1
gene name sf1,LOC107753954,LOC107691964,LOC107562691,LOC107588130
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12170525 ~ 12182262 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936372.2
CGAGCGTTCTTTGTCCACCTCAACGGCGCCATTTTGGTCAACCATATCGTGACAGTGGAAGGTTGTATAGTATTCGGTGCGGTTCAGTTTATTTTCGTGAAGGCGTCAGTCTTATGATTTTTTAAGCAGAAGAAAGTCGACGGACTAGAGGAAGATAAATACACCAGGAAATGGCAACGGGAGCAAACGCAACCCCGCTGGGGAAGCTGCACCCGAGTATCGGCGCTAAGCGGGGCTTCGACTCGGGGCCCGGTGCTGGCTTAATGCCTCCGCCGGGGCCTCCGGCCTCTTTCCCGCTCCAAAACTTTCAACAGATGCCGGGTGCCGCTTTCCCAGGATTTCCCGGGGCTGCTGGTTCATTTCCAAACCCACCCATTGCTGGACCGCAGTCTCAAGGCGGAGATATGAGtatgaagaagaggaaaaggagtcGCTGGAGCAGCGAGACCCCCGATCAGAAGACCGTTATCCCAGGAATGCCCACCGTCATCCCTCCCGGCCTTACTCGTGAACAGGAGAGAGCTTATATAGTCCAACTGCAGATCGAAGACCTGACACGTAAACTGCGTACAGGAGACCTGGGAATCCCTGTTAATCCTGAGGACAGGTCTCCTTCTCCTGAGCCAATCTATAACAGCGAGGGGAAGAGGTTGAACACACGTGAGTACCGCACCCGCAAAAAACTGGAAGAGGAGAGACATTCACTCATCACTGAGATGGTTGGGCTGAACCCTGAGTTTAAGCCCCCTGCTGACTATAAGCCTCCAGCCACCAGAGTTAGTGATAAAGTGATGATTCCACAGGACGAGTATCCAGAAATCAACTTTGTTGGACTTCTCATTGGGCCACGTGGCAACACGCTGAAGAACATTGAGAAAGAGTGCTGTGCTAAGATCATGATCCGTGGGAAGGGTTCTGTTAAGGAGGGAAAAGTGGGCCGTAAAGACGGACAGATGCTTCCAGGAGAAGACGAGCCTCTACACGCCTTGGTCACTGCCAACACCATGGAGAACGTCAAGAAGGCCGTAGAGCAGATCCGTAATATCCTGAAACAGGGTATTGAGACCCCAGAGGATCAGAATGACCTGAGGAAGATGCAGCTGAGGGAGCTGGCCCGACTCAACGGCACTCTGAGAGAGGATGATAACAGGATTCTGCGCCCTTGGCAAAATTCTGAGCCTCGTAGCATTACCAACACtaccctgtgcacaaagtgtgGAGGAGCTGGACATATCGCCTCTGACTGCAAGTTTACAAGTACATATACCCAGAGGCAAGGTGATCCACCCCAGTCAGCTCAGGATAAGGCGCGTATGGATAAAGAGTATCTTTCTCTAATGGCCGAGCTGGGAGAGGCTCCAGTTCCCGCATCCGGTGGTggacacaacaacaacaacccacCCAGTGGCCCCCGAGGAACTGGACCTAACGCCAACCAGCCACCTCCAAACCGTCCTCCCTGGATGAACTCGGGCCCTTCAGATAACAGGAACTTCCATGGCATGCATGGTGGTCCAGGTGGTCATGGAGGTCCCCACAACTTCCCTCCTCCTATGCCCAACATGGGTGGACCACCCATGCCTCCCAACCCTAACGGCATGCCCCCACCATGGATGCAGCCACCCCCTCCACCCATGGGCCAGGGCCCAGCTCCTCATGGACACCCGATGGGTTTGTTGCCACCTCCTATGGGCATGAtgccacctcctccacctccaccaaaCAACCAACCACCCCCGCCCCCATCCGGGCCTCTGCCACCATGGCAGCAGCAGGCCCCACCCCCTCCACCCACCAGCAGCATGGCAACCAGTGCCCCGCTGCCATGGCAGCAGAATACCCCTACCACTTCCACCCCAGCTACGGGTAACCTGCCTCCATGGCAGCAACCCCAGCCAGCGGCAAGCTCTGCCGCCCAGCCCCCTCCTCCTATGGGAAACCCCTCCATGGTGCCCCCTCCACCTGGGGTTCAGCCCCCACTGCCCCCTGGTgcccctcctcctccccctccaccacctccagGCTCAGCAGGCATGATGTATGCAccccctccacctcctccacccaTGGACCCCAACTTTGTTACCATGATGGGAATCCCAGGAATTCCTCCATTTGGGATGCCACCTGCTCCACCTCCCCCACCACCCCAAAATTAAATGCCCCCACATCAACCACATGATAGAGGCTGGAGGACAACATGACTTGGTTCTACTTGATGTATGTTGTTAATACAGCTGGTGTGgttgaaatgtgtaaatttgtTTAACTTAATTTgtttctgattttaaaattgtaGTGTTTGCTCAGTTGGTAGATTatttgtgggtgtttttttttttttttttttggatgtgcaGGGAATggtatgtgtgtttgcagggCCTTCATTTCAGTGGTTGGCCTAAATTTCAGTGCTAAATGACATTCCAGACCACAGTAATTAAACAGTTATAATGttaatctatatattttttttttcattcattacaAAATCAGATGGTTTCCTCTCTAATGAATCGAAAAAAGTTTTCCATCCAAAAGCTTTCTTTTGTAAAttcatatctttaaaaaaaaaaaaaaaaaaaaaaaaaaacagattttgttgttgtctgaatatttttgtaatgCTAACTTCAGCTAAATAAAAGTTGAAATGGCCTCACATTTATGTAGTAACAAATACAGGTGGGCAGATTCTTCGCTTATGTTGTGCTTTTGCAGTTCCAGGTttggttgtttttatttttaggatttCTTTTAGAATGCCTCTGTCTCAAGTGTGCATAAAAGACTTGAAGCTACTTCAATCTATTCATGTTATACAGGGCTTTAACTACATGTGTATTCCTGACTGCTTCTGCAAGAATACTGTCCCACTCTTTTGCCCCCACTTTTCTTAGTGTATTGTCTTCTGAAGCTCCACTCAACTCTTCTCAAGTTGAAAATCTATAAAGGATTTTGCCTCAAGAAAAGGAAAGATAAAGATGCAATGAAATGATCTAACAGGTGTACGGGTCTTTTGTAGGAAATTGCACCTTCACAGTTAGTTCCACCTGCATAACCATGGAAATGaaactgatttatttctgaCTAACCTCATCCATTGGGTTTGTGTGAGGTCATCTGATACAGTTgtctaaatttatttttgttcttcccCGTAGGcttttttgctttgtgtgtgcaACTGTCCAGTCCTGAAGTGCTCaactattttttattgtatgtaCAGTACAAAATGGACAAAGTGAATATATGTTAAGTTCCTGTACTCTTAAAATAAAGGGGATTATACATTTCTATTAAAA

Function

symbol description
sf1 Predicted to enable mRNA binding activity. Acts upstream of or within retina development in camera-type eye. Predicted to be part of spliceosomal complex. Predicted to be active in nucleus. Orthologous to human SF1 (splicing factor 1).

NR:

description
splicing factor 1-like

GO:

id name namespace
GO:0060041 retina development in camera-type eye biological_process
GO:0003723 RNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K13095 SF1; splicing factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936372.2 True 3311 mRNA 0.48 12 12170525 12182262

Neighbor

gene id symbol gene type direction distance location
pygmb pygmb,pygm,LOC108267457,LOC108434859 coding downstream 2424 12150419 ~ 12168101 (-)
clcn5b LOC108267828,LOC108434858,LOC107557080,LOC107715429,LOC107733513 coding downstream 22033 12125821 ~ 12148492 (-)
ccnb3 LOC108267136,LOC108410408 coding downstream 87314 12069043 ~ 12083211 (-)
zgc:109889 zgc:109889,LOC108267204,LOC108434857,LOC105007310,LOC107742291,LOC107562726 coding downstream 310412 11834368 ~ 11860113 (-)
si:dkey-172j4.3 LOC108434852,LOC108267497,LOC107753941,LOC107742290 coding downstream 373925 11717345 ~ 11796600 (-)
rbm4.1 LOC108267459,LOC106608592 coding upstream 3262 12185524 ~ 12189447 (-)
LOC113540082 LOC108267460 coding upstream 8560 12190822 ~ 12194683 (-)
rbm4.3 rbm4.3,rbm4b,LOC108267461,LOC107576930,LOC106577685 coding upstream 13255 12195517 ~ 12199352 (-)
ponzr6 LOC108267463 coding upstream 30725 12212987 ~ 12221939 (-)
fxr2 fxr2,LOC108267464,LOC108434865,LOC107750766,LOC107753958 coding upstream 45159 12227421 ~ 12242773 (-)
G63174 LOC108268320,LOC103041464,LOC108410411,LOC105029413,LOC107562848,LOC107691962,LOC106578044 non-coding downstream 47515 12067332 ~ 12123010 (-)
G63062 NA non-coding downstream 166206 12004007 ~ 12004319 (-)
G63058 NA non-coding downstream 197578 11972711 ~ 11972947 (-)
G63031 NA non-coding downstream 272424 11897845 ~ 11898101 (-)
G63015 NA non-coding downstream 302822 11867450 ~ 11867703 (-)
G63219 NA non-coding upstream 143198 12325460 ~ 12325671 (-)
G63267 NA non-coding upstream 172130 12354392 ~ 12355772 (-)
G63502 NA non-coding upstream 485179 12667441 ~ 12670500 (-)
G63555 NA non-coding upstream 527367 12709629 ~ 12709841 (-)
G63578 NA non-coding upstream 585687 12767949 ~ 12797341 (-)
htr2cl1 LOC108267122,LOC108434824 other downstream 203622 11862625 ~ 11966903 (-)
LOC117597110 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108261673,LOC108267241,LOC108267937,LOC108267740,LOC108267935 other downstream 635282 11524826 ~ 11535243 (-)
si:dkey-183c6.7 LOC108267942 other downstream 754628 11402027 ~ 11415897 (-)
LOC113540328 LOC108267738,LOC108267931,LOC108267739,LOC108267932,LOC108267933,LOC108267740,LOC108261673,LOC108267241,LOC108267937,LOC108267929 other downstream 810481 11266384 ~ 11360044 (-)
si:dkey-165a24.9 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC105903083,LOC107572570,LOC107753961,LOC107659726,LOC107588125 other upstream 64700 12246962 ~ 12249754 (-)
LOC113539775 NA other upstream 89956 12272218 ~ 12277669 (-)
tmem256 tmem256,LOC107659713,LOC107564775,LOC107560291 other upstream 302461 12484723 ~ 12489562 (-)
acap1 acap1,LOC107731905,LOC107683535,LOC107595305,LOC107675497 other upstream 1103737 13285999 ~ 13308478 (-)
zgc:194312 LOC108267841 other upstream 1253794 13436056 ~ 13440520 (-)

Expression


Co-expression Network