LOC113540134 (LOC108267236)


Basic Information

Item Value
gene id LOC113540134
gene name LOC108267236
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28124082 ~ 28140907 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936390.2
ttggcggctccttccataaatgttaaatgaacatcttttttacagaaaactttaccattgTCAGCACTGAGGTTATGGACAATTAATCAATACCTCATtcaatcaaatttgagaattcaacagtgctgtgggatAAGTAATGATAGACCTTGTAAAGGTATAAAGTCTCCTTCATGAACATGTTTGATGTCACATTAGCCAGTAGACATGTAAGTGTGTTAGCCTAATCCTGTGGATCTGCCTGCTGTTAATCCGAGTGTTACatcagtcagtcactcacacacacacaagaatgaAGATATGAAGTCATTTGCTGTGATGGTGCTTTCCCAAGCTGAGAAATATCCAGGTCTTCAGATTCAGTCAGCTCATCAATTGTGAATCATGTCAGGAATGATCATGCTAGTCTGGAACGTCCTGTTGCTTTTTGCAGATGCTCTCTCTCACGAGGACTTTGATGCCTGCAAAAACAGTCCATGCCAAAATGGTGGTGTTTGCATAAGAAACAAAGGCGATTACACTTGCCAGTGCTCTAACAGTTCCCAAAATGGCCGACTCTATGGAGGACCAAACTGCACGGTTATACTGCAGGGCTGTGAGCGCCACCAATGCCAAAATGGTGGCACATGCTCTCCTTTTCTCAGAAGCAGTCAACACAGATACAGCTGCAACTGCCCTGAAGGTTACACCGGCACAAGGTGTGAGATTTCCACCACGTTTTCTTTTGAAAAGAGCGGATTCCTACACATCGAAACAGCCCTTGAGGATACATTGGTACTTTTGAACATTACTTTGAGTTTTCGCACGGTGCAAAAAACAGCGACTCtactgcactgtgaagtggatGAGTACGTACTCAAGCTGCAGTTGCAAAATGGCCGACTACGTCACTCCATGCAATGGGGCAACAACAACCAGTCAGATCTGGTGGACCTTTTTCAGGATGTAGCAGATGGCCACTGGCATATGGTGCAGGTTTTCTTGTACAAAAGTGTGCTGGGACTTGATTTGCGTGACCCACTGTGCACAGCGAAAACCTGCCACAAAGAAGCACTAGTGGAAATGGATCTGGGGTCTGGGTCAGGACAGTCCTCTTTCACTCTGATCCAGAGTGTCTATATAGGTGGAACAGGAAATGGACAAGTAAATCCAGACTCATATTTCCTGGGCTGCATGCGGGATGTCTACATTCAGTCCCGCCCAGTGGTTCTGGAGTTAAAGGTCAGAGCTGAGCAGTTCGGTGTGACTTTGGGCTGTAGGGAAAGTGACGGCTGTGAGGACAATCCATGCAAGAACAGAGGGAAGTGCATCGGCTTAGGATGGAAGAAACACAAGTGCGAGTGCCATCGTCCCTACGAGGGAAGCGTCTGCTCCGAGGAACACATCGCTGCACAGTTTGGGAATGAAGATGTGGAAAGCTATGCAATTTTTTATGTGGACGATGACCCCATGGACACTTTCACCATCTCCATGTTCATTCGCACACGCCGTTTAAACGGTCTGCTCCTTGTTTTTTCGAACAGCACGAGCCGTTACCTGCACGTATGGCTGGATGGTGGGAAAGTCAAAGTTCAGGTGAATCACTTTGAAATCCTACAGGGTCACGACAGAGTTAATGATGGACACTTTCACCTGGTGAGCGTGCATGTGGCACAGGGAATGCTCACGCTCTTGCACTCCGCTAGGACTCAGGCCTTGATGGCCAGCCAAGGTTTGACAGTTCGATCAGGTGACATGGTTCATGTGGGAGGCTTAGAGGATCGAAAAGCCTCATTAGCATTCAGGGGCTACTTTAAAGGATGCATCCAGGACCTTCGGCTGAACTTCAATCACCTGCAGTTTTACCCAATCAGCACTCCACTGGCTTCCTACAGGCTCAAGACAATTGTGCAGGTCACACAGGGCTGCACTGGTGATAATTACTGCAAGaTGAAACCCTGTCTTAATGGTGGTGTGTGTTACTCCATGTGGGATGATTTTACCTGCAGTTGCCCTCCAAACACAGCAGGGTGGCGCTGTGAGAAGCTGAAGTGGTGTGAGCTTTCCCCATGTCCCGTTAATGCAGGGTGTCTCACACACGCTCAGGGATTCGACTGTGTTACAAACGTCACTTTCCGTGAAGGAAACCCCATCATCTTGTTTAGAGGTAACGGCAAAATCCGCCGCCCCCTCCACAGCGTATCGCTGACGTTCCGCACAAGGAGCCATGACGCTACACTGCTGCATGCCTCACGAGAAAACGActtcattacagttttcctcAAGGACGGACAACTTGTTCTGGAGCTTCAGAGTGGCACAAACTTCTCACTCTGTGTGCAGAGCcaCCGGGTAGTGGTGAACGACGGACGTTGGCACAGTGCCATCCTGAGCATGAACAACCCATCCGCGCTGACCTCCAGGTGGTCCATGGTCCTTGACGAGCGTAGAGACCAAGCGTCCATCTCCTACAACTCTTCTGGAGATCTGGGCTTCCTGAGGGAAGACACAGACATCATTTTGGGTGGCTGGGAACTCAATACTGGGGCGAATTTGGATGGATGTCTGGGTTCGGTGGAAGTTGGTGGCCTTGTTTTGCCATTTTATGCAGAGACAGAACTTAATATGCCCAGACCTCAAGAGGAAAAGTTCTTGAGGACATCTGGAATGCAGAACTTAGGGTGTTGGAGCTTTGATATTTGCAATCCGAACCCTTGCCACAATGGAGGCCAATGTGAAGATCTTTTTGACCTCTTTAAATGTCGATGCCCAGCTGATTGGCACGGTCAGATTTGTGAGGTCAGGACTGATGCTTGTTCCTCGAATCCTTGCCTTCATGGAGCCTGTGTCATTGTTTCTGAAGgttacgagtgtgtgtgtgagtcaggaTACATTGGTCAGCACTGTGAAAATAAAGAGGACGTATGTGTGGGACACAAGTGCCATAATGGAGGTACCTGCCTCAGAGGAATCAAACAATATGCCTGCCTTTGCCCGAGAAACACAACCGGAGCTCTTTGCCAAGAACGAATGGCAGAAATGCCTTGGTACATCGACAGGTTTCCGTCTCCTAGGTTGCCGGTCTCCATCTGCGGCAATGACAAGTGGActtacagctgctttaatggTGGAAACTGCTCCATGTTTGAGGACAAGTGTGACTGCCTGCCTGGTTTTACTGGACAGTGGTGTGAGCTGGAGCTGGACGAGTGTGCGTCTGGCCCATGCCTGAATGGCGGATACTGCCGCAACCTCATCAACAaattccagtgtgtgtgtgagatcagctTCGCTGGCGAGCGCTGCCAGATCGACATCAGCGATTTCTACCTCTATAGTTTCCTGCTGATGTGGCAGAACATCTTCCAGCTGCTCTCCTACCTCATCCTGCGCATGGACGATGAGCCTGAGATCGAGTGGAACGCTGCCAACGAtgagtaaattaaaaaacagaggAGTGAGTGACGAGGGACGAGAGACAGGTTCTCTAAATATGGGCCAGTGGGTTGTATTTAAAGAAACCCAGCATGAAAGTAGAAATCGGAAATAGTTATGTCATTCATTTTATGGCGTATGAGCAGTGTTCTTATTTGTAATGGATGGTCataatgtgtacattttataaatacaaaatataatgtgtaactgacagaagtttaaaaagaaaagttctctcagaaataaagtacACAATTTCACATAAGACACATTCAGTGTCtgaactttctttcttttgtttttctctggAGCTACCAGACTAATGTGGC
>XM_034303980.1
tctccagtgtcagtgctttgtcacagagtcagtcactcacacacacacaagaatgaAGATATGAAGTCATTTGCTGTGATGGTGCTTTCCCAAGCTGAGAAATATCCAGGTCTTCAGATTCAGTCAGCTCATCAATTGTGAATCATGTCAGGAATGATCATGCTAGTCTGGAACGTCCTGTTGCTTTTTGCAGATGCTCTCTCTCACGAGGACTTTGATGCCTGCAAAAACAGTCCATGCCAAAATGGTGGTGTTTGCATAAGAAACAAAGGCGATTACACTTGCCAGTGCTCTAACAGTTCCCAAAATGGCCGACTCTATGGAGGACCAAACTGCACGGTTATACTGCAGGGCTGTGAGCGCCACCAATGCCAAAATGGTGGCACATGCTCTCCTTTTCTCAGAAGCAGTCAACACAGATACAGCTGCAACTGCCCTGAAGGTTACACCGGCACAAGGTGTGAGATTTCCACCACGTTTTCTTTTGAAAAGAGCGGATTCCTACACATCGAAACAGCCCTTGAGGATACATTGGTACTTTTGAACATTACTTTGAGTTTTCGCACGGTGCAAAAAACAGCGACTCtactgcactgtgaagtggatGAGTACGTACTCAAGCTGCAGTTGCAAAATGGCCGACTACGTCACTCCATGCAATGGGGCAACAACAACCAGTCAGATCTGGTGGACCTTTTTCAGGATGTAGCAGATGGCCACTGGCATATGGTGCAGGTTTTCTTGTACAAAAGTGTGCTGGGACTTGATTTGCGTGACCCACTGTGCACAGCGAAAACCTGCCACAAAGAAGCACTAGTGGAAATGGATCTGGGGTCTGGGTCAGGACAGTCCTCTTTCACTCTGATCCAGAGTGTCTATATAGGTGGAACAGGAAATGGACAAGTAAATCCAGACTCATATTTCCTGGGCTGCATGCGGGATGTCTACATTCAGTCCCGCCCAGTGGTTCTGGAGTTAAAGGTCAGAGCTGAGCAGTTCGGTGTGACTTTGGGCTGTAGGGAAAGTGACGGCTGTGAGGACAATCCATGCAAGAACAGAGGGAAGTGCATCGGCTTAGGATGGAAGAAACACAAGTGCGAGTGCCATCGTCCCTACGAGGGAAGCGTCTGCTCCGAGGAACACATCGCTGCACAGTTTGGGAATGAAGATGTGGAAAGCTATGCAATTTTTTATGTGGACGATGACCCCATGGACACTTTCACCATCTCCATGTTCATTCGCACACGCCGTTTAAACGGTCTGCTCCTTGTTTTTTCGAACAGCACGAGCCGTTACCTGCACGTATGGCTGGATGGTGGGAAAGTCAAAGTTCAGGTGAATCACTTTGAAATCCTACAGGGTCACGACAGAGTTAATGATGGACACTTTCACCTGGTGAGCGTGCATGTGGCACAGGGAATGCTCACGCTCTTGCACTCCGCTAGGACTCAGGCCTTGATGGCCAGCCAAGGTTTGACAGTTCGATCAGGTGACATGGTTCATGTGGGAGGCTTAGAGGATCGAAAAGCCTCATTAGCATTCAGGGGCTACTTTAAAGGATGCATCCAGGACCTTCGGCTGAACTTCAATCACCTGCAGTTTTACCCAATCAGCACTCCACTGGCTTCCTACAGGCTCAAGACAATTGTGCAGGTCACACAGGGCTGCACTGGTGATAATTACTGCAAGaTGAAACCCTGTCTTAATGGTGGTGTGTGTTACTCCATGTGGGATGATTTTACCTGCAGTTGCCCTCCAAACACAGCAGGGTGGCGCTGTGAGAAGCTGAAGTGGTGTGAGCTTTCCCCATGTCCCGTTAATGCAGGGTGTCTCACACACGCTCAGGGATTCGACTGTGTTACAAACGTCACTTTCCGTGAAGGAAACCCCATCATCTTGTTTAGAGGTAACGGCAAAATCCGCCGCCCCCTCCACAGCGTATCGCTGACGTTCCGCACAAGGAGCCATGACGCTACACTGCTGCATGCCTCACGAGAAAACGActtcattacagttttcctcAAGGACGGACAACTTGTTCTGGAGCTTCAGAGTGGCACAAACTTCTCACTCTGTGTGCAGAGCcaCCGGGTAGTGGTGAACGACGGACGTTGGCACAGTGCCATCCTGAGCATGAACAACCCATCCGCGCTGACCTCCAGGTGGTCCATGGTCCTTGACGAGCGTAGAGACCAAGCGTCCATCTCCTACAACTCTTCTGGAGATCTGGGCTTCCTGAGGGAAGACACAGACATCATTTTGGGTGGCTGGGAACTCAATACTGGGGCGAATTTGGATGGATGTCTGGGTTCGGTGGAAGTTGGTGGCCTTGTTTTGCCATTTTATGCAGAGACAGAACTTAATATGCCCAGACCTCAAGAGGAAAAGTTCTTGAGGACATCTGGAATGCAGAACTTAGGGTGTTGGAGCTTTGATATTTGCAATCCGAACCCTTGCCACAATGGAGGCCAATGTGAAGATCTTTTTGACCTCTTTAAATGTCGATGCCCAGCTGATTGGCACGGTCAGATTTGTGAGGTCAGGACTGATGCTTGTTCCTCGAATCCTTGCCTTCATGGAGCCTGTGTCATTGTTTCTGAAGgttacgagtgtgtgtgtgagtcaggaTACATTGGTCAGCACTGTGAAAATAAAGAGGACGTATGTGTGGGACACAAGTGCCATAATGGAGGTACCTGCCTCAGAGGAATCAAACAATATGCCTGCCTTTGCCCGAGAAACACAACCGGAGCTCTTTGCCAAGAACGAATGGCAGAAATGCCTTGGTACATCGACAGGTTTCCGTCTCCTAGGTTGCCGGTCTCCATCTGCGGCAATGACAAGTGGActtacagctgctttaatggTGGAAACTGCTCCATGTTTGAGGACAAGTGTGACTGCCTGCCTGGTTTTACTGGACAGTGGTGTGAGCTGGAGCTGGACGAGTGTGCGTCTGGCCCATGCCTGAATGGCGGATACTGCCGCAACCTCATCAACAaattccagtgtgtgtgtgagatcagctTCGCTGGCGAGCGCTGCCAGATCGACATCAGCGATTTCTACCTCTATAGTTTCCTGCTGATGTGGCAGAACATCTTCCAGCTGCTCTCCTACCTCATCCTGCGCATGGACGATGAGCCTGAGATCGAGTGGAACGCTGCCAACGAtgagtaaattaaaaaacagaggAGTGAGTGACGAGGGACGAGAGACAGGTTCTCTAAATATGGGCCAGTGGGTTGTATTTAAAGAAACCCAGCATGAAAGTAGAAATCGGAAATAGTTATGTCATTCATTTTATGGCGTATGAGCAGTGTTCTTATTTGTAATGGATGGTCataatgtgtacattttataaatacaaaatataatgtgtaactgacagaagtttaaaaagaaaagttctctcagaaataaagtacACAATTTCACATAAGACACATTCAGTGTCtgaactttctttcttttgtttttctctggAGCTACCAGACTAATGTGGC

Function

NR:

description
PREDICTED: protein crumbs homolog 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936390.2 True 3746 mRNA 0.48 9 28124082 28138768
XM_034303980.1 False 3506 mRNA 0.48 10 28124082 28140907

Neighbor

gene id symbol gene type direction distance location
ahsg2 LOC108267477 coding downstream 1979 28117092 ~ 28122103 (-)
tsc22d2 tsc22d2,LOC107709364,LOC103395840,LOC107559349 coding downstream 30145 28075616 ~ 28093937 (-)
cpdp LOC108268310,LOC108430687,LOC105899208 coding downstream 59553 28056712 ~ 28064529 (-)
dpp6b LOC108267703,LOC108430761 coding downstream 284985 27704281 ~ 27839097 (-)
trnat-ugu_9 NA coding downstream 499274 27624736 ~ 27624808 (-)
LOC113540126 NA coding upstream 16922 28157829 ~ 28170981 (-)
LOC113540124 NA coding upstream 32414 28173321 ~ 28196057 (-)
cdc73 cdc73 coding upstream 97989 28238896 ~ 28275315 (-)
ro60 trove2 coding upstream 135789 28276696 ~ 28286658 (-)
shha shh coding upstream 335524 28476431 ~ 28491847 (-)
G72651 LOC108267776 non-coding downstream 54805 28068492 ~ 28069277 (-)
G72652 NA non-coding downstream 55998 28067582 ~ 28068084 (-)
G72604 NA non-coding downstream 111278 28011684 ~ 28012804 (-)
LOC117597146 NA non-coding downstream 138226 27974470 ~ 27985856 (-)
G72607 NA non-coding downstream 165594 27912870 ~ 27958488 (-)
G72709 NA non-coding upstream 202227 28343134 ~ 28383460 (-)
G72720 NA non-coding upstream 224750 28365657 ~ 28379132 (-)
G72726 NA non-coding upstream 256754 28397661 ~ 28471771 (-)
G72796 NA non-coding upstream 526416 28667323 ~ 28668643 (-)
LOC117597077 NA non-coding upstream 572127 28713034 ~ 28717955 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 82297 28016064 ~ 28041785 (-)
pcyt1aa pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373 other downstream 568095 27547752 ~ 27555987 (-)
tsen15 tsen15 other downstream 640249 27474765 ~ 27483833 (-)
LOC113540508 LOC108268039 other downstream 691404 27415267 ~ 27432678 (-)
trnat-ugu_4 NA other downstream 727859 27396151 ~ 27396223 (-)
LOC117597043 NA other upstream 57084 28197991 ~ 28225603 (-)
trnas-uga_1 NA other upstream 95279 28236186 ~ 28236267 (-)
trnas-uga_2 NA other upstream 95817 28236724 ~ 28236805 (-)
LOC113540437 fam159a other upstream 507417 28648324 ~ 28652425 (-)
LOC117597168 NA other upstream 646707 28787614 ~ 28791829 (-)

Expression


Co-expression Network