pcxb (pcxb,LOC108267638,LOC108428573,LOC107721657,LOC107661964,LOC107583287,LOC107661088)


Basic Information

Item Value
gene id pcxb
gene name pcxb,LOC108267638,LOC108428573,LOC107721657,LOC107661964,LOC107583287,LOC107661088
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14298897 ~ 14503829 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936435.2
aacagagagaaagagagggctGAACATTGTATGCCAAACAGGACAAGGCCTGACATTCTTGTTCACTGTCTGCTGGAACAGCAACACTTCctctgactgtgtgtgagtgtatatgtgtgctcTGTGCAAATAGAAGCTTCATCAGTGTATCACACACCTCCTCAAGACCAAAGCGTCACTTTCTGCCTCATTCATCCATTTGTGACCTGAAGACTGCTCACTGCAGGTAAATTCAGgatGGTCTTGTATTTGGGAGTGGTGAGGCATGGCTTGGGCATGCTCTCTATCCGGAGAGCGTACTTGCTCTCACGCTGTGCCCACACCTCACCTCAGAGCCTTGACTACCGGCCAATCAAAAAGGTCCTGGTAGCCAACAGAGGTGAGATAGCAATCCGTGTATTCCGAGCATGTACAGAGCTGGGGATCCGGACAGTGGCTGTGTACTCCGAGCAGGATACAGGCCAGATGCACAGACAGAAAGCAGATGAGGCCTACCTGATTGGCAAAGGGCTGCCCCCTGTTGCTGCTTACCTCCACATACCTGACATCATCAAAGTGGCCAAGGAGAATAATGTGGATGCCATCCATCCAGGATATGGGTTCTTGTCAGAACGTTCAGATTTTGCTCAGGCCTGTGAGGACTCAGGGGTTAGATTCATTGGCCCAAGTCCTGAAGTGGTGCACAAGATGGGGGATAAAGTAGAGGCTCGTGCTCTAGCCATCAAAGCTGGTGTTCCAGTGGTCCCAGGGACAGATGCTCCAATATCCTCTCAGCAGGAGGCTCAGGAGTTTGCTAAGACCTACGGCTTTCCCATCATTTTCAAAGCAGCCTATGGGGGAGGTGGCCGTGGCATGCGGGTGGTCAGGGAGTATGAGGAGTTAGAGGAGAATTACCAGAGGGCATACTCTGAGGCTTTGGCTGCTTTCGGAAATGGTGCTCTGTTTGTAGAGAAGTTCATTGAGAAACCACGCCACATTGAGGTGCAAATtctagGTGATAAGTATGGAAATGTGATCCATTTGTATGAGAGAGACTGTTCCATTCAGAGACGCCATCAGAAGGTGGTGGAGGTTGCTCCTGCAGCTCATCTGGACCCTCATCTCAGAGACAGACTCACCTCTGACTCGGTTAAACTCGCCAAGCAGGTTGGCTATGAAAATGCCGGCACAGTGGAGTTCCTGGTGGACAAACACGGGAAACACTACTTCATCGAGGTCAACTCCCGTCTCCAGGTGGAGCACACTGTTACTGAGGAGATCACTGAtgTGGATCTTGTCCATGCACAGATCCGTGTGTGTGAGGGCCAGAGTCTTCCTGAGCTTGGCCTTAGACAGGATAAGATCAAGATCAATGGCTGTGCCATCCAATGCCGTGTCACCACAGAGGACCCGGCCCGTGGATTCCAGCCCGACACAGGACGAATAGAGgTGTTCAGGAGTGCAGAAGGAATGGGCATTCGCTTGGACAGCGCATCTGCGTTCCAGGGAGCAGTTATATCACCACACTATGACTCCCTATTGGTTAAAGTCATCTCAAGTGGGAAGGATCTGCCAACTGCGGCGAGTAAGATGCTCCGGGCCCTGGCAGAGTTTCGCATCCGTGGAGTGAAGACAAACATTCCCTTCCTGCAGAACGTTTTGGGTAATAATCAGTTTCTGCACAGCACAGTGGACACACAGTTTATCGATGAGAATCAGGACCTGTTCAACCTCAAACCCACGCAGAACCGTGCACAGAAACTCCTGCATTATCTGGGACATGTGATGGTAAATGGGCCGACGACACCAATCCCAGTCAAAGCCAAGCCTTCTACCACAGACCCAGTCATTCCTCCTGTCCCTCTAGgagaacCTCCTGCAGGTTTCCGTGAGGTCCTGTTGAAGGAAGGTCCTGAGGGTTTTGCCCGAGCAGTGAGACAGCATCAGGGTTTGCTCCTGATGGACACCACTTTCAGAGATGCTCATCAGTCTCTGCTGGCTACACGTGTCAGAACACATGACCTGAAAAAGATCGCCCCGTACGTCGCACACAACTTCAGCAATCTCTTCAGTGTGGAGAACTGGGGAGGTGCTACATTTGATGTGGCTATGCGCTTCCTGTCAGAGTGTCCATGGCGAAGACTGCAGCAGCTGAGAAAACTATTACCTAATGTGCCTTTCCAGATGTTGCTAAGAGGAGCTAATGCAGTGGGTTACACCAACTACCCTGACAACGCCGTATTCAAGTTTTGTGAAGTGGCAAAGGAGAATGGTATGGACATCTTTCGGGTATTTGACTCTCTAAACTACCTACCTAACATGCTGATGGGAATGGAGGCTGCTGGCACAGCTGGAGGTGTGGTGGAAGCAGCCATCTCTTACACAGGAGACGTCTCTGATCCCATGAGACAGAAATACTCACTGGAATACTATCTGCAGCTAGCAGAGGAACTTGTGAAGGCGGGGACGCATATACTGGCTATAAAGGACATGGCTGGTTTGTTAAAACCTGAGGCAAGTCAATTGCTGATCACAGCTCTGAGAGATAGATTCCCAGAAGTTCCCATCCACGTACACACTCATGATACAGCAGGTGCAGGTGTGGCGGCCATGTTGGCATGCGCTGAGGCGGGTGCTGATATCGTAGACGTGGCAGTGGACTCCATGGCTGGCATGACATCTCAGCCCAGCATGGGCGCTATAGTGGCCTGCACCAAAGGCACCAAACATGACACTGGGATTTCTCTGGAGAATGTGTTTGACTACAGCGAGTACTGGGAGGTCACTCGTGGTCTGTATGCTCCTTTTGACTGTACTGCCACTATGAAGTCTGGGAATGCTGATGTCTATGAGAACGAGATCCCAGGAGGCCAGTATACTAACCTGCACTTCCAGGCTCATAGCATGGGTCTGGGCAACAAGTTTAAAGAGGTGAAGAAAGCGTATGCCGAGGCCAACAAACTGCTGGGTGACCTTATCAAGgTGACTCCGTCATCTAAGATTGTGGGAGACTTGGCACAGTTCATGGTTCAAAACTCACTCTCTAGGGCCGAGGTAGAAGAGCGGGCAGATGAACTGTCCTTCCCTCTGTCTGTGGTGGAGTTTCTGCAGGGACACATTGGCATTCCTCACGGAGGCTTCCCCGAGCCGTTCAGGTCAAAGGTGCTTAAATCGCTGCCTCGGATCGAGGGTCGTCCGGGTGCATCCCTGCCCCCCATGGACTTCAAAAAACTGGAGGCTGATCTACGTGCAGCACATGGTGAGGACATCACGCCTGAAGATGTGATGTCAGCAGCCATGTACCCAAAAGTCTTTCAGGAGTTTAAAGAGTTCACATCTAATTTCGGGCCCGTCGACTGTCTCAACACGCGCCTATTTCTCGATGGACCAAAAATTGCAGAGGAGTTCCAGGTTGAGCTGGAAAGAGGAAAGACATTACATATCAAAGCCTTGGCTTTGGGGGACCTGAACAAAGCTGGGCAGAGGGAGGTGTTTTTTGAGCTTAATGGTCAACTGCGGTCCGTCCTAGTCAAAGATATGGTGGCTATGAAGGAGATGCACTTCCATCCAAAGGCTTTGAAGGACGTCAAGGGTCAGGTGGGAGCCCCCATGCCAGGGAAGGTGGTGGAGGTGAAGGTGAAACAGGGTCAGAAGGTGGAGAAAGGTCAGCCCCTCTGCGTGCTCAGCGCCATGAAGATGGAGACTGTGGTGAACTCGCCAGTCACAGGAACCGTGGCCAAGGTGTACGTCAAGGCTGATAGCACGCTGGAAGGAGACGATTTGATCCTGGAGATCACAGAGTAAATTTTAAAGGTCAGGGACAGGGCAGAGGTTAAACAACACAAGCCCACTAGCACTGGTGATGCTTGACTCTTTATTAACTTTCCTAATTggtattaaattttaaaaatacatttcaaacagCTTTAAATATTCAGTGCAAGTACCAGAGAGGTGTAATatccaaaatattaatattttattcagcaatacatttttattttgaaagtgaATTATCTACAAAATGTGACAACAGCGTAGGATTGCAGTTCTCTTTCTGTCATAAGTTTGAACTACACATCCTCACCTAGAACTTTATGGCATATTGAATCTAGCTATGTGACAGAGCTATATTTTCCACAGTGATGATTCTAGTATTAAAGTGATAAATGAATTTATTGCCTGTTAACGTGACTAATCATTGTAAATTCTGCAAATGTATGAAGTtttgtgcatgtatgtataaGATCTCTTATGGATCAAAGTACACCAATTTTGTCTTAATGTTACATGAGTGGagcattaaaacacatattatAATAGATgtaaaatatcaatattaaGCTCTCCAGAACATGCAGtacaaattaaagcaaaaatattaGATGGGTTGCCAAAATAATGTATCTTACATCATAGCTTATGATATAAATTCACCTGATTATGGGGCCATTTTATAAttgaattttataaataaagctaatgtttgtttcagtgtaaa

Function

symbol description
pcxb Predicted to enable pyruvate carboxylase activity. Acts upstream of or within response to cadmium ion. Predicted to be active in cytoplasm. Is expressed in brain; gill; liver; and musculature system. Human ortholog(s) of this gene implicated in pyruvate carboxylase deficiency disease. Orthologous to human PC (pyruvate carboxylase).

NR:

description
PREDICTED: pyruvate carboxylase, mitochondrial-like

GO:

id name namespace
GO:0006094 gluconeogenesis biological_process
GO:0046686 response to cadmium ion biological_process
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004075 biotin carboxylase activity molecular_function
GO:0004736 pyruvate carboxylase activity molecular_function

KEGG:

id description
K01958 PC, pyc; pyruvate carboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936435.2 True 4480 mRNA 0.48 22 14298897 14503829

Neighbor

gene id symbol gene type direction distance location
plcb3 plcb3,LOC108267602,LOC108428576 coding downstream 78609 14157436 ~ 14220288 (-)
cct7 cct7,LOC107697251,LOC107721663,LOC107691460,LOC107583281,LOC107744273 coding downstream 211916 14079705 ~ 14086981 (-)
LOC113539907 paip2b,LOC103027680,LOC108428580,LOC107721669,LOC108426126 coding downstream 244862 14041951 ~ 14054035 (-)
dok1b dok1 coding downstream 265857 14018458 ~ 14033040 (-)
sema4f sema4f,LOC108267878 coding downstream 330986 13912683 ~ 13967911 (-)
rell1 rell1 coding upstream 145119 14648948 ~ 14674373 (-)
rwdd rwdd4,rwdd,LOC107658349,LOC107721653,LOC107661961,LOC107757904 coding upstream 172614 14676443 ~ 14680843 (-)
trnae-cuc_13 NA coding upstream 230827 14734656 ~ 14734727 (-)
lrch4 LOC108267880,LOC108428567 coding upstream 270169 14773998 ~ 14809362 (-)
pcolceb pcolce2,pcolceb,LOC108428564,LOC107684948,LOC107750313,LOC107711558,LOC107557504 coding upstream 327935 14831764 ~ 14840438 (-)
G64461 NA non-coding downstream 3198 14295494 ~ 14295699 (-)
G64440 NA non-coding downstream 45134 14250611 ~ 14253763 (-)
G64434 NA non-coding downstream 68069 14178574 ~ 14230828 (-)
G64291 NA non-coding downstream 257609 14040666 ~ 14041288 (-)
G64305 NA non-coding downstream 281947 14016595 ~ 14016950 (-)
LOC117597192 NA non-coding upstream 118207 14622036 ~ 14632753 (-)
G64860 NA non-coding upstream 358095 14861924 ~ 14862199 (-)
G64929 NA non-coding upstream 463378 14967207 ~ 14968539 (-)
G64964 NA non-coding upstream 697469 15201298 ~ 15201545 (-)
G65253 NA non-coding upstream 1402265 15906094 ~ 15960367 (-)
G64436 NA other downstream 55216 14232809 ~ 14243681 (-)
zgc:194312 LOC108267841 other downstream 858377 13436056 ~ 13440520 (-)
acap1 acap1,LOC107731905,LOC107683535,LOC107595305,LOC107675497 other downstream 990419 13285999 ~ 13308478 (-)
tmem256 tmem256,LOC107659713,LOC107564775,LOC107560291 other downstream 1809335 12484723 ~ 12489562 (-)
LOC113539775 NA other downstream 2021228 12272218 ~ 12277669 (-)
tbc1d19 tbc1d19,LOC107660707 other upstream 1375642 15879471 ~ 15904355 (-)
smim20 NA other upstream 1469750 15973579 ~ 15991985 (-)
acox3 acox3 other upstream 1550699 16054528 ~ 16071692 (-)
tnfsf12 tnfsf12 other upstream 1915335 16419164 ~ 16426624 (-)
leap2 LOC100304644 other upstream 2088733 16592562 ~ 16594505 (-)

Expression


Co-expression Network