ttc19 (ttc19)


Basic Information

Item Value
gene id ttc19
gene name ttc19
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23907159 ~ 23919306 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936458.2
ACGTACGTCATGACGCATTCAAAGAGGAAACATGGCGCTCGCTTCCAGCTGTCGTCTTTTCATGGCTCTTGGTATGAAACGGTTGATAAAGCAGGGAGTGAGGACAGTCTGCGTGTCAGGTTTATCTGAAACGCACCAGCAGCACCAGCAGCACCAGCAGCTGTCGGTCACATCGCCTCTGCGCGACTCCAGGCGAAGAAGGTCATTTAAATTACACAGAAATGCGCCATATTGTAATGAGGAAGGTGGGAGTGAGCACACTGGCTACTCTTTTGCAGTGTGGAGTGCAATGGCGTTCTCCCTGTTTGGCAGTAAAGATGAAAGAACGGAGGCCCAGAAGATGGAGGATGAGATTATTCTCCTGTTAAAGAAAGCAAAGTACAGCATGATGCTCGGGGAGCTGGATGCAGCGAACGGCTTCTTACATAAAGCAATTCGTCTCGCCCATCAGAGTCACAACAACAACGCCATCATCTACACCTACAGCCTGATGGCCAACTTGGCCTTTGTTCAAGGTGAGCTGGACAATGCTGAGAAACTGTTCAAAGCTGCAATGAGTTTCATGCTGTCTGGAGGAACACCACAGGATGACAACGCAGTCATTGAAATGTCCCTGAAGTTGGCCAGCATCTATGCCACTCAAAACaaGAATGAGCTGGCAGAGCATGGCTTTCAGTTCTGCACTGACTCACTGGAGGCCAAGATCGAGAAGCAGAAGGATCTTCCACCAGATGCTGTATCAGCagaagaggaaaggaaggaCACGCGGCTGCTGCTTGGCCTCAGTCTGGATGCTCGGGCTCGATACCTGGCGTCCTCCCGGCGCCTGACAGGAGCATGCAGGGATTACCACCAAGCTCTGCAGATCTGCCAGGAGGAGCAAGGAGAAGCCCATCCTCAGACGCTGACCTTGATGAGTGACCTGGCCACAGTGTTGGACCTACAGGGGAAGCACGATGAGGCGTTAGCTCAGGTCAGGAAGGCTGTAGAACTGGGCCAGACAGCCGGCCACCCCGACCAACACGTGCTGCTGGGAAACATGGCAGGCATTTTAATGCACAAAGGTGAGTTCGAGGAGTCTGTTAAGCTGTACGAGGAGGCTTTGGCCCTGGCACAGGCGGCCGGAGACGCTGAGGCTGTTCAGCAGTTTGAGGAGGGACTGAAGGAGCTGagcaggaggagagaggaaaaaaagcagagTACGAATGAGGTGACATCAGCTGAGCAGTgactacacactaaacactcctACTCTGGAAGTATGAACTCCTTAAATGGAAttattgaactgaactgaggaAGCACTAGACTGGGTGTGTGATCgttgatcatcatcatcatcatcatcctgatCATCCTCCTCCTAAGGCCAAGCACATAGCATACTTAATTTCCCACTGGATTCTTATTAGTGATTAGGCTAAGCTCTGTGGTGTTAAATTAAGAATGAAGATGTACGTACGTGTTGTTTGTTTACAGTTCCTCTGGAAAATCCAAATCGGGAAAGACAGTGACTCAGGAAGTGCTGATGGAGAGAATGTGATAACATGTCATATCTGGAAAATGCATCACTGATGTCTATAAACTCTACTAATGCCTCTCTTGATCTTCCCAAGTTTGACATGACAAATGATATATGATaagatgtgtatgtttttgtcttaattaaGATATCTATTCTTGTGCAGTAGTTAGTGAGGGTGCTGTACAGACTGAAGAACTCTCTTGTAAGAGATAATTGACAGCGGTTACAAACATTAAAATCTATTTGACTTTGCGGCTGTTGTGCAACAGTTAA
>XM_026936459.2
ACGTACGTCATGACGCATTCAAAGAGGAAACATGGCGCTCGCTTCCAGCTGTCGTCTTTTCATGGCTCTTGGTATGAAACGGTTGATAAAGCAGGGAGTGAGGACAGTCTGCGTGTCAGGTTTATCTGAAACGCACCAGCAGCACCAGCAGCACCAGCAGCTGTCGGTCACATCGCCTCTGCGCGACTCCAGGCGAAGAAGGTCATTTAAATTACACAGAAATGCGCCATATTGTAATGAGGAAGGTGGGAGTGAGCACACTGGCTACTCTTTTGCAGTGTGGAGTGCAATGGCGTTCTCCCTGTTTGGCAGTAAAGATGAAAGAACGGAGGCCCAGAAGATGGAGGATGAGATTATTCTCCTGTTAAAGAAAGCAAAGTACAGCATGATGCTCGGGGAGCTGGATGCAGCGAACGGCTTCTTACATAAAGCAATTCGTCTCGCCCATCAGAGTCACAACAACAACGCCATCATCTACACCTACAGCCTGATGGCCAACTTGGCCTTTGTTCAAGGTGAGCTGGACAATGCTGAGAAACTGTTCAAAGCTGCAATGAGTTTCATGCTGTCTGGAGGAACACCACAGGATGACAACGCAGTCATTGAAATGTCCCTGAAGTTGGCCAGCATCTATGCCACTCAAAACaaGAATGAGCTGGCAGAGCATGGCTTTCAGTTCTGCACTGACTCACTGGAGGCCAAGATCGAGAAGCAGAAGGATCTTCCACCAGATGCTGTATCAGaagaggaaaggaaggaCACGCGGCTGCTGCTTGGCCTCAGTCTGGATGCTCGGGCTCGATACCTGGCGTCCTCCCGGCGCCTGACAGGAGCATGCAGGGATTACCACCAAGCTCTGCAGATCTGCCAGGAGGAGCAAGGAGAAGCCCATCCTCAGACGCTGACCTTGATGAGTGACCTGGCCACAGTGTTGGACCTACAGGGGAAGCACGATGAGGCGTTAGCTCAGGTCAGGAAGGCTGTAGAACTGGGCCAGACAGCCGGCCACCCCGACCAACACGTGCTGCTGGGAAACATGGCAGGCATTTTAATGCACAAAGGTGAGTTCGAGGAGTCTGTTAAGCTGTACGAGGAGGCTTTGGCCCTGGCACAGGCGGCCGGAGACGCTGAGGCTGTTCAGCAGTTTGAGGAGGGACTGAAGGAGCTGagcaggaggagagaggaaaaaaagcagagTACGAATGAGGTGACATCAGCTGAGCAGTgactacacactaaacactcctACTCTGGAAGTATGAACTCCTTAAATGGAAttattgaactgaactgaggaAGCACTAGACTGGGTGTGTGATCgttgatcatcatcatcatcatcatcctgatCATCCTCCTCCTAAGGCCAAGCACATAGCATACTTAATTTCCCACTGGATTCTTATTAGTGATTAGGCTAAGCTCTGTGGTGTTAAATTAAGAATGAAGATGTACGTACGTGTTGTTTGTTTACAGTTCCTCTGGAAAATCCAAATCGGGAAAGACAGTGACTCAGGAAGTGCTGATGGAGAGAATGTGATAACATGTCATATCTGGAAAATGCATCACTGATGTCTATAAACTCTACTAATGCCTCTCTTGATCTTCCCAAGTTTGACATGACAAATGATATATGATaagatgtgtatgtttttgtcttaattaaGATATCTATTCTTGTGCAGTAGTTAGTGAGGGTGCTGTACAGACTGAAGAACTCTCTTGTAAGAGATAATTGACAGCGGTTACAAACATTAAAATCTATTTGACTTTGCGGCTGTTGTGCAACAGTTAA
>XM_026936460.2
CGTTCTCCCTGTTTGGCAGTAAAGATGAAAGAACGGAGGCCCAGAAGATGGAGGATGAGATTATTCTCCTGTTAAAGAAAGCAAAGCATGATGCTCGGGGAGCTGGATGCAGCGAACGGCTTCTTACATAAAGCAATTCGTCTCGCCCATCAGAGTCACAACAACAACGCCATCATCTACACCTACAGCCTGATGGCCAACTTGGCCTTTGTTCAAGGTGAGCTGGACAATGCTGAGAAACTGTTCAAAGCTGCAATGAGTTTCATGCTGTCTGGAGGAACACCACAGGATGACAACGCAGTCATTGAAATGTCCCTGAAGTTGGCCAGCATCTATGCCACTCAAAACaaGAATGAGCTGGCAGAGCATGGCTTTCAGTTCTGCACTGACTCACTGGAGGCCAAGATCGAGAAGCAGAAGGATCTTCCACCAGATGCTGTATCAGCagaagaggaaaggaaggaCACGCGGCTGCTGCTTGGCCTCAGTCTGGATGCTCGGGCTCGATACCTGGCGTCCTCCCGGCGCCTGACAGGAGCATGCAGGGATTACCACCAAGCTCTGCAGATCTGCCAGGAGGAGCAAGGAGAAGCCCATCCTCAGACGCTGACCTTGATGAGTGACCTGGCCACAGTGTTGGACCTACAGGGGAAGCACGATGAGGCGTTAGCTCAGGTCAGGAAGGCTGTAGAACTGGGCCAGACAGCCGGCCACCCCGACCAACACGTGCTGCTGGGAAACATGGCAGGCATTTTAATGCACAAAGGTGAGTTCGAGGAGTCTGTTAAGCTGTACGAGGAGGCTTTGGCCCTGGCACAGGCGGCCGGAGACGCTGAGGCTGTTCAGCAGTTTGAGGAGGGACTGAAGGAGCTGagcaggaggagagaggaaaaaaagcagagTACGAATGAGGTGACATCAGCTGAGCAGTgactacacactaaacactcctACTCTGGAAGTATGAACTCCTTAAATGGAAttattgaactgaactgaggaAGCACTAGACTGGGTGTGTGATCgttgatcatcatcatcatcatcatcctgatCATCCTCCTCCTAAGGCCAAGCACATAGCATACTTAATTTCCCACTGGATTCTTATTAGTGATTAGGCTAAGCTCTGTGGTGTTAAATTAAGAATGAAGATGTACGTACGTGTTGTTTGTTTACAGTTCCTCTGGAAAATCCAAATCGGGAAAGACAGTGACTCAGGAAGTGCTGATGGAGAGAATGTGATAACATGTCATATCTGGAAAATGCATCACTGATGTCTATAAACTCTACTAATGCCTCTCTTGATCTTCCCAAGTTTGACATGACAAATGATATATGATaagatgtgtatgtttttgtcttaattaaGATATCTATTCTTGTGCAGTAGTTAGTGAGGGTGCTGTACAGACTGAAGAACTCTCTTGTAAGAGATAATTGACAGCGGTTACAAACATTAAAATCTATTTGACTTTGCGGCTGTTGTGCAACAGTTAA

Function

symbol description
ttc19 Predicted to be involved in mitochondrial respiratory chain complex III assembly. Predicted to act upstream of or within cell division. Predicted to be located in mitochondrion and respirasome. Predicted to be active in mitochondrial inner membrane. Human ortholog(s) of this gene implicated in mitochondrial complex III deficiency nuclear type 2. Orthologous to human TTC19 (tetratricopeptide repeat domain 19).

NR:

description
PREDICTED: tetratricopeptide repeat protein 19, mitochondrial isoform X2

GO:

id name namespace
GO:0034551 mitochondrial respiratory chain complex III assembly biological_process
GO:0005743 mitochondrial inner membrane cellular_component

KEGG:

id description
K18169 TTC19; tetratricopeptide repeat protein 19, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936458.2 True 1798 mRNA 0.48 10 23907159 23919306
XM_026936459.2 False 1795 mRNA 0.48 10 23907159 23919306
XM_026936460.2 False 1500 mRNA 0.48 9 23907159 23918414

Neighbor

gene id symbol gene type direction distance location
slc4a2a slc4a2,LOC108413474 coding downstream 7252 23859872 ~ 23899907 (-)
ubtfl ubtfl,LOC108267581,LOC107718032 coding downstream 48773 23845044 ~ 23858386 (-)
asap1a LOC108267580,LOC108437251 coding downstream 63855 23784098 ~ 23843304 (-)
fam49ba LOC108267758,LOC106592588,LOC107713994,LOC107718035,LOC107657432,LOC107556887 coding downstream 125046 23758384 ~ 23782113 (-)
amph amph coding downstream 323663 23547170 ~ 23583496 (-)
faim2a LOC108413298 coding upstream 5774 23925080 ~ 23935101 (-)
abcf2a abcf2,abcf2a,LOC107599875,LOC107657436,LOC107709809,LOC107556971 coding upstream 16024 23935330 ~ 23942837 (-)
smarcd3a smarcd3,smarcd3a,LOC103039772,LOC107599876,LOC107718026 coding upstream 24547 23943853 ~ 23973123 (-)
tmub1 tmub1,LOC105023792,LOC106568619 coding upstream 55441 23974747 ~ 23982005 (-)
fastk fastk,LOC107599878,LOC107701011,LOC107557009,LOC107657442,LOC107718024 coding upstream 68498 23987804 ~ 24001864 (-)
G69691 NA non-coding downstream 255293 23651051 ~ 23651866 (-)
G69649 NA non-coding downstream 312615 23594331 ~ 23594544 (-)
LOC113540115 NA non-coding downstream 452938 23453233 ~ 23454221 (-)
G69551 NA non-coding downstream 509196 23396664 ~ 23397963 (-)
G69503 NA non-coding downstream 628377 23278575 ~ 23278782 (-)
G69916 NA non-coding upstream 2800 23922106 ~ 23922538 (-)
LOC117597086 NA non-coding upstream 12027 23931333 ~ 23932235 (-)
G70025 NA non-coding upstream 218987 24138293 ~ 24138492 (-)
G70026 NA non-coding upstream 226272 24145578 ~ 24145784 (-)
G70027 NA non-coding upstream 226584 24145890 ~ 24146241 (-)
LOC117597117 NA other downstream 375143 23531238 ~ 23532016 (-)
LOC113540013 NA other downstream 389489 23516930 ~ 23517670 (-)
LOC113540114 LOC108267227 other downstream 390800 23515699 ~ 23516359 (-)
LOC117597116 NA other downstream 392224 23514374 ~ 23514935 (-)
LOC113540012 NA other downstream 393120 23513456 ~ 23514039 (-)
G70255 rnf220 other upstream 385068 24304374 ~ 24304926 (-)
ccdc24 ccdc24 other upstream 646435 24565741 ~ 24586048 (-)
ltb4r2b NA other upstream 2452615 26371921 ~ 26376408 (-)
G71596 NA other upstream 2552774 26472080 ~ 26551030 (-)
G71832 NA other upstream 3177296 27096602 ~ 27100858 (-)

Expression


Co-expression Network