faim2a (LOC108413298)


Basic Information

Item Value
gene id faim2a
gene name LOC108413298
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23925080 ~ 23935101 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936461.2
CCTCGGTAGTGTAGTAGACTGGCGAGGACGCAGCCAATAGTTCTCCTCAGCTCCTCCTGCGTTATTACTCCTTTTGTGTGAATTGATTTGGTTTAGAAAACTATCACGTCTACCGTTAAAGGCAGTATGAGTCTTCCAGCTTCCCCTCCGAGCTACGCCGAGGCTACAGCAGGAGATAAACAGCAAGCTGCTGGAAGTCTGCTCAATCCAGATCCAGGGTACGCAAACCCATACACCTCAGATACATCCACACCCTTCTCTGATCCAAGCTCCAATGGCAATTTTGATGGCCTCAGTGGAAGCCACTGGGAGGACAAGAACGTCCGTCGCATGTTCATCAGAAAGgTATACTGCATCCTCATGATTCAGCTAACAGTGACTTTCAGTGTTGTAGCACTCTTTACTTTCTGtaAGCCAGTGCAGCAGTTTATTCAGTACAATCGTATCCTGTATCTTGCCTCATACATGACCTTCATGGGGACATATCTGGTGCTGGTGTGCAGTAAAAGTGCTCGACGAAGATACCCAACCAACATGATCCTTCTTGGAATCTTTaCTTTGGCAATGTCCTACATGGCAGGCATGTTGGCTAGcttcCATAATACCAAAGTGGTGATGCTGTGTGTAGGTATAACCGCgttggtgtgtttgtgcatcACCATTTTCTGTTTCCAGTCCAAGGTTGATTTCACCTCTCGTCACGGTCTGCTCTTTTCCCTCATGATGGTGCTGATGTTCACCGGGCTGCTGATCCTCAGCACTGCACCATTTGGATATATACCCTGGTTGCAGACTGCGTTTGCAGGACTGGGTGCTCTGGTTTTCACTCTGTTCTTGGCTTTTGACATGCAGCTGTTGATGGGTGATGGACGTTACTCACTGAGCCCTGAGGAGCATGTCTTTGGTGCCCTCTGTCTCTACATGGACATCGTCTACATCTACATCTTCCTACTGCAGCTTTTCTGGAGCCGTGAGTGAGGCCAGGAACAAGTTCTGCCCCCTGTCTCCTGTCCTCTGTTCTAGATAACATTACAGACACACTATCCTCACTAACACCAAGCCTCCACAAGGTGTCTTCCTTACTACGTAGAATAGAATCCGCAGCCTTTAATTCTCTTGCCTTTTAAACcctgttatattgttatattgatATTTATGTCATTGCAgtaaggagaagaaaaagaaatagcaCTTTATTGACAATCATGACGTAATGCACGCTTTcagtcttcaaaaaaaaaagtaggttaCTTTATCTCCAATACTCCAGTCTCCACTGTGAGCCAGttataaagaaaatgagagTAAAGTCAATCGAAAGAATGCTATTCTGATTAAACTGCCTCTTACAGCCTAATGACAGTTACACATAGTCAAGTCTCATGTTAATCATATCACGTTCTGTGACACAAATATCCACTGTTTGAATGTGAAAGTTTTCACAGAGACaggcaaatattttattagacATCTGCAAAAATAGCCTACTCATCCACAATCTCCAAGAAGAATCTGTACAAAGTTATAATGCTTATGCGTGGAGTCGCCTAAATGCACACTAGATGCTCAGGCATCAAGGCTGATATTTAATGTGAACAGTTAATCatgtatttgttaaataaatgcttcaTCAGGGTA
>XM_026936462.2
CCTCGGTAGTGTAGTAGACTGGCGAGGACGCAGCCAATAGTTCTCCTCAGCTCCTCCTGCGTTATTACTCCTTTTGTGTGAATTGATTTGGTTTAGAAAACTATCACGTCTACCGTTAAAGGCAGTATGAGTCTTCCAGCTTCCCCTCCGAGCTACGCCGAGGCTACAGCAGGAGATAAACAGCAAGCTGCTGGAAGTCTGCTCAATCCAGATCCAGGGTACGCAAACCCATACACCTCAGATACATCCACACCCTTCTCTGATCCAAGCTCCAATGGCAATTTTGATGGCCTCAGTGGAAGCCACTGGGAGGACAAGAACGTCCGTCGCATGTTCATCAGAAAGgTATACTGCATCCTCATGATTCAGCTAACAGTGACTTTCAGTGTTGTAGCACTCTTTACTTTCTGtaAGCCAGTGCAGCAGTTTATTCAGTACAATCGTATCCTGTATCTTGCCTCATACATGACCTTCATGGGGACATATCTGGTGCTGGTGTGCAGTAAAAGTGCTCGACGAAGATACCCAACCAACATGATCCTTCTTGGAATCTTTaCTTTGGCAATGTCCTACATGGCAGGCATGTTGGCTAGcttcCATAATACCAAAGTGGTGATGCTGTGTGTAGGTATAACCGCgttggtgtgtttgtgcatcACCATTTTCTGTTTCCAGTCCAAGGTTGATTTCACCTCTCGTCACGGTCTGCTCTTTTCCCTCATGATGGTGCTGATGTTCACCGGGCTGCTGATCCTCAGCACTGCACCATTTGGATATGGGACAGACTTCAAGACAAAGGAGTTTACACGTTCTGTTTTCTCGGTAAAATGACAGTGCAttttttga

Function

NR:

description
hypothetical protein EH28_16446

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936461.2 True 1638 mRNA 0.44 12 23925080 23935101
XM_026936462.2 False 846 mRNA 0.47 11 23926358 23935101

Neighbor

gene id symbol gene type direction distance location
ttc19 ttc19 coding downstream 5774 23907159 ~ 23919306 (-)
slc4a2a slc4a2,LOC108413474 coding downstream 25173 23859872 ~ 23899907 (-)
ubtfl ubtfl,LOC108267581,LOC107718032 coding downstream 66694 23845044 ~ 23858386 (-)
asap1a LOC108267580,LOC108437251 coding downstream 81776 23784098 ~ 23843304 (-)
fam49ba LOC108267758,LOC106592588,LOC107713994,LOC107718035,LOC107657432,LOC107556887 coding downstream 142967 23758384 ~ 23782113 (-)
abcf2a abcf2,abcf2a,LOC107599875,LOC107657436,LOC107709809,LOC107556971 coding upstream 229 23935330 ~ 23942837 (-)
smarcd3a smarcd3,smarcd3a,LOC103039772,LOC107599876,LOC107718026 coding upstream 8752 23943853 ~ 23973123 (-)
tmub1 tmub1,LOC105023792,LOC106568619 coding upstream 39646 23974747 ~ 23982005 (-)
fastk fastk,LOC107599878,LOC107701011,LOC107557009,LOC107657442,LOC107718024 coding upstream 52703 23987804 ~ 24001864 (-)
LOC113540038 NA coding upstream 72587 24007688 ~ 24009864 (-)
G69916 NA non-coding downstream 2542 23922106 ~ 23922538 (-)
G69691 NA non-coding downstream 273214 23651051 ~ 23651866 (-)
G69649 NA non-coding downstream 330536 23594331 ~ 23594544 (-)
LOC113540115 NA non-coding downstream 470859 23453233 ~ 23454221 (-)
G69551 NA non-coding downstream 527117 23396664 ~ 23397963 (-)
G70025 NA non-coding upstream 203192 24138293 ~ 24138492 (-)
G70026 NA non-coding upstream 210477 24145578 ~ 24145784 (-)
G70027 NA non-coding upstream 210789 24145890 ~ 24146241 (-)
G70044 NA non-coding upstream 243930 24179031 ~ 24179864 (-)
G70540 NA non-coding upstream 937529 24872630 ~ 24872833 (-)
LOC117597117 NA other downstream 393064 23531238 ~ 23532016 (-)
LOC113540013 NA other downstream 407410 23516930 ~ 23517670 (-)
LOC113540114 LOC108267227 other downstream 408721 23515699 ~ 23516359 (-)
LOC117597116 NA other downstream 410145 23514374 ~ 23514935 (-)
LOC113540012 NA other downstream 411041 23513456 ~ 23514039 (-)
G70255 rnf220 other upstream 369273 24304374 ~ 24304926 (-)
ccdc24 ccdc24 other upstream 630640 24565741 ~ 24586048 (-)
ltb4r2b NA other upstream 2436820 26371921 ~ 26376408 (-)
G71596 NA other upstream 2536979 26472080 ~ 26551030 (-)
G71832 NA other upstream 3161501 27096602 ~ 27100858 (-)

Expression


Co-expression Network