pigk (pigk,LOC107751867,LOC107599845)


Basic Information

Item Value
gene id pigk
gene name pigk,LOC107751867,LOC107599845
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29055012 ~ 29077436 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936498.2
GCTACTTCCGGGTTTAAAAGGCGAAGCTGTCAAGGCTCTGCACCAGGCTAGCAGAAATGGCAACTTTCATATTACTAACACTATATGCTTTTATAAACTGTTTCACATTTTTGCCAGTCGTACACAGCAACAATGTTGAGACGAAAGCTGCGCAGTTCTTCAGCAGCGGTCACACGAACAACTGGGCCGTGCTGGTTTGCACTTCGAGGTTCTGGTTCAACTATCGCCACGTTGCCAACGTGCTGTCTGTGTACAGGAGCGTGAAGAGACTGGGCATCCCGGACAGTCACATCGTTCTGATGTTAGCTGACGACATGGCCTGCAACCACAGAAACCCCAAACCTGCTACCGtgttcagccacaagaacatggAGCTGAACGTGTACGGAGACGACGTCGAAGTGGATTACCGCGGATACGAGGTGACAGTGGAGAATTTCCTGCGAGTGCTGACCGGACGACTCCCGGCGAGCACGCCTCGCTCCAAGCGCTTACTGAGCGACGACCGCAGCAACATCCTCATCTACCTCACGGGTCACGGTGGGAACGGCTTCCTAAAGTTCCAGGACTCGGAGGAGATCAGCAACGTGGAGCTGGCCGACGCATTCGAGCAGATGTGGCAGAAGCGAAGATATAACGAGCTGCTGTTTATAATCGACACCTGCCAGGCGTCCATGTACGAGCGGTTCTACTCGCCCAATATCATGGCTCTGGCCAGCAGCCAAGTGGGAGAAGACTCTCTTTCACACCAGCCTGACCTCGCCATCGGAGTCCATCTGATGGACAGATACACCTTCTACCTGCTGGAGTTCCTGGAAGACATCCATCCTGCCAGTCAGGCCAATATGAAcgatctgTTTAAGGTGTGTCCACCGAGCCAGTGTGTGTCCACGCCGGGCCACCGTACCGACCTGTTCCTGCGAGACCCCGGCAGTGTCCTGATCACCGATTTCTTCGGCAGCGTGCGTAAAGTGGAGATCACGCGGGAGGTGGTGAACCTGACCACACCGATAGAGGAAACATCCACAGTCACGTCTGTTGCTCAACAAAATGAGATGAGCGAGGTGCTGTCTTACGTGGACCAGTTACCAGTGGCTGAAATCATTCATCAGAAACCCAAACAGAAGGACTGGCACCCTCCAGACGGCTTCATCCTCGGCCTGTGGACGCTCATCCTGCTCGTCTTCTTCAAAACCTACGGCatcaaacacctcaaacacatCTTCTAACCGATGTTCATATTTCTCCATCACGAATTCCTACTTTTGTCTGGAGGTTTTCGACAGCGCCCATGCTTTAAAAAGTCCtcaagcttttttaaaaaagcattgtgAGGCCCAGGACACACTTTTTGAAAGGCGACGCGCTCTGACTACTGACTTTGACGATCCTTTGTTGTGCTCTGTTACGGACTGTAATCTGGTTAAATTTCAGCAACAGGgactttttttggg

Function

symbol description
pigk Predicted to enable GPI-anchor transamidase activity. Acts upstream of or within detection of mechanical stimulus involved in sensory perception of touch and protein localization to cell surface. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of GPI-anchor transamidase complex. Orthologous to human PIGK (phosphatidylinositol glycan anchor biosynthesis class K).

NR:

description
GPI-anchor transamidase

GO:

id name namespace
GO:0050976 detection of mechanical stimulus involved in sensory perception of touch biological_process
GO:0016255 attachment of GPI anchor to protein biological_process
GO:0006508 proteolysis biological_process
GO:0034394 protein localization to cell surface biological_process
GO:0042765 GPI-anchor transamidase complex cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0003923 GPI-anchor transamidase activity molecular_function

KEGG:

id description
K05290 PIGK; GPI-anchor transamidase subunit K

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936498.2 True 1454 mRNA 0.52 12 29055012 29077436

Neighbor

gene id symbol gene type direction distance location
LOC113540041 dnajb4,LOC108430719,LOC107599850,LOC107681825,LOC107751861 coding downstream 136860 28911613 ~ 28918152 (-)
LOC117597036 NA coding downstream 174810 28877573 ~ 28880202 (-)
gipc2 gipc2,LOC108430720 coding downstream 193569 28842922 ~ 28861443 (-)
LOC113540190 NA coding downstream 227048 28798977 ~ 28827964 (-)
ppm1la ppm1la,ppm1l,LOC108267660,LOC108430727,LOC107560765,LOC107722109,LOC107681725,LOC107701333 coding downstream 269257 28763304 ~ 28785755 (-)
zzz3 zzz3,LOC104950552 coding upstream 53750 29131186 ~ 29147492 (-)
dipk2aa dia1a,LOC108268022,LOC108437525,LOC107681802,LOC107599840,LOC107722302,LOC107565821 coding upstream 222870 29300306 ~ 29322917 (-)
chst2a LOC108268021 coding upstream 255683 29333119 ~ 29336703 (-)
pcolce2a LOC108268019 coding upstream 282064 29359500 ~ 29371526 (-)
mfsd8l2 LOC108267997,LOC108437504 coding upstream 364679 29442115 ~ 29452793 (-)
G73248 NA non-coding downstream 785 29053597 ~ 29054227 (-)
G73264 NA non-coding downstream 11042 29043760 ~ 29043970 (-)
LOC113540203 NA non-coding downstream 25821 28940662 ~ 29029191 (-)
G73243 NA non-coding downstream 66629 28986472 ~ 28988383 (-)
LOC117597038 NA non-coding downstream 158213 28892016 ~ 28896799 (-)
G73247 NA non-coding upstream 50619 29128055 ~ 29196167 (-)
G73249 fubp1 non-coding upstream 110722 29188158 ~ 29189340 (-)
G73318 LOC107599861 non-coding upstream 136117 29213553 ~ 29215051 (-)
G73319 NA non-coding upstream 138834 29216270 ~ 29218158 (-)
G73327 NA non-coding upstream 196153 29273589 ~ 29320334 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 170047 28873578 ~ 28884965 (-)
LOC117597168 NA other downstream 263183 28787614 ~ 28791829 (-)
LOC113540437 fam159a other downstream 402587 28648324 ~ 28652425 (-)
trnas-uga_2 NA other downstream 818207 28236724 ~ 28236805 (-)
trnas-uga_1 NA other downstream 818745 28236186 ~ 28236267 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other upstream 71202 29148638 ~ 29171921 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other upstream 486785 29564221 ~ 29575727 (-)
zgc:110366 LOC108267892,LOC108437513 other upstream 647152 29724588 ~ 29730857 (-)
G73619 blvra other upstream 942070 30019506 ~ 30022525 (-)
LOC113540055 LOC108268301 other upstream 1664091 30741527 ~ 30750968 (-)

Expression


Co-expression Network