trmt44 (trmt44,LOC107710993)


Basic Information

Item Value
gene id trmt44
gene name trmt44,LOC107710993
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 19354380 ~ 19372755 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936566.2
ACGAGCTGGGTTTGAACAAGGACTTTTACTTTGAAACGCGTCGTTGCTGCTAGCTAGCATAACTGTAAACATGAGGTACTGTAACTAGCAGCAGGTAACGTGACTTTTTAAGGCTGGAAGTAAGTAATGTTGTGCTCGTGGACACTTGTGTGTAGATAAAACTGTCTGAGATGAGGCCCGAAGGCTTCTGGTCTGCGGTTGATGTGTGGATAAAGAAGCCTCATGTGGTGAATAAGCGGCTGTGCGGAGCGACAGAGACGGAATACAGAGCTGTGAGCTGTGAGGAGCTCGAGCTCTGTCTCTGCAGCTTCCTCAGCATCAGTCAGCGGGATTTAGCAGAAATCGTCCCTTTCCTGCACGCGCACACAGCGGCCACGAGCCACCAGACTGTACCAACCTGGAGTGTAGGAGGGAGAACCATCATCCCTAAAGCAGGGCTACAGAGCAATGGAGCAAAGCTGTACAAGGAGATTATTGTCAAAGATTTGAATGGACAAACAGTGACATTTCTGCCAACTGAAGAAAACAGTGAAGGCCACATCATTCTGAGGGAAAGTAATATTTATCAGATCCAGCTTCAGGAAAAGACAGATGATTGGATATTGTCTCTTCATGCCCTGAGACCTGATCAGTGGTATAGTGATGGCGTGGCCTACCCCAAACTCACCTGGCTGACATCGGAGCTTCTTCCTAAACTAGCACGCTGGGCCACAGAGAGCAAAGCCACAGAGTTCAAGAGTACTCTGTCTCTCATTCCTGTCGAGAAGTACAGCATACTCTACCAGCagctgaaaaacaaatacaaagagATTGTCAAGGTCTGGCCTGAAGTAACTGATCCTGAGAAATTTGTCTTTGAAGATGTTGCCATTGCTACATATCTTCTTGTTTTATGGGGTGAAGAGCGAGCTGAAAAAGGAATAACATCCAAACAGTCTTTTGTGGACCTCGGCTGTGGAAATGGCCTGCTTGTCCACATATTAAACAATGAAGGGCATCCTGGAAAGGGAATTGACATTCGCAAGCGAAAGATCTGGGACATGTATGGACCCAATACACACTTAGAGGAAAAGGCAATCACGCCCAGCGCTGCGTTCCTCTTCCCTGAGACGGACTGGCTGATTGGAAACCACTCAGATGAGCTCACGCCATGGATCCCCGTTATAGCAGCCAGATCATCGTACTATTGCCGCTACTTTGTGCTCCCTTGCTGCTTCTTTGACTTCTGTGGGAAGTACCAGCGCCGACAGTGTAAGAAGTCTCAGTACAGGGAGTATGTAGACTTCATCAACGAGGTCAGCGTAGCATGTGGCTTTCAAACAGATGAAGACTGTCTGAGGATTCCCTCCACTAAGCGGGTCTGCCTAATTGGGAAGAGTAGGAGTTATGAGCAGGCTGAGGAAGAGTTAGCAGAAGTGAAAAGAACAGATTACATTAGGGGACGGCAGGCCTTAACTGACAACTCGACAGTTGTTAGTCAGAAAGAGCACAGTGGACCTCATCATCATGGAGATGGACAGGAGATGGCCAAAGCAGGATGTGACTGGGGAAACGGCTTTCAGCCGAGGGAGAAGATCGAGACAGTCAGAAACTGTGCAGCTCTCCCTAGAGACTTTGTAGATGGTGTCGTCCTGAAGGTGGCGATGGCCTTGTTGGGACTCactggagagaaaagagaggaggaggaagaggacaaGATTGGAAAGCAGAGAATTAGGTGGAATGCAGGAGGCTCTCTGTCCGTCCGTGAGGTAGCTGAGCTCCTGGACCAGTCAACATTGCAGACACTGAAGAAAGAATGCGGAGGACTACAGACTCTGCTGAAAAACAACCATCAAGTGTTCCGAGTGGAAGGTGGAAAGGTTCACATTCGTGACTGGCGCACTCAGGGCACCCAGACTGACCCGAAGCGCAAATCCCAAATCTCAGGAGCACTAAAAACCCGACTCTGCTGGTTCCACACTCACCACCCTGATGGATGTCCACTGTCCAGCAATGACTGCGTTTTTGCCCATGGGGCTGATGACCTCCGACCCTCCACACGCCCCCTGAAAAAACACAGGAGCTGATCATGATCGATGCTAAGAActtttgtatgtttatatttgaaTTGAAACTCCATGAAGACTCACATTGATTTTgtttataacatttacattaaaggAGAATTCAGAGGTATTTTGGGCTTCGAAAATTTGTCTTGTCGGAGTGTGTGTAAGTTATCGATAATGCCTTGGCTTcttatttgttttctgttgtttgtaTAGCAACAGATCAAACTGAAATTCTCCTTGCAAGTATTCTGGGATTACCAATAAACACACGAACTCAATAAGGACCACACAA

Function

symbol description
trmt44 Predicted to enable tRNA (uracil) methyltransferase activity. Predicted to be involved in tRNA methylation. Predicted to be located in cytoplasm. Orthologous to human TRMT44 (tRNA methyltransferase 44 homolog).

NR:

description
probable tRNA (uracil-O(2)-)-methyltransferase

GO:

id name namespace
GO:0008152 metabolic process biological_process

KEGG:

id description
K15447 TRM44, METTL19; tRNASer (uridine44-2'-O)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936566.2 True 2346 mRNA 0.47 11 19354380 19372755

Neighbor

gene id symbol gene type direction distance location
etnppl etnppl coding upstream 15673 19328031 ~ 19338707 (+)
LOC113540597 col25a1,LOC102793499 coding upstream 27003 19170699 ~ 19327377 (+)
ppp1r15a NA coding upstream 400380 18951047 ~ 18954000 (+)
sod3a NA coding upstream 502800 18849165 ~ 18851580 (+)
gba3 LOC108267130,LOC108437095 coding upstream 924021 18426358 ~ 18430359 (+)
gpr78b gpr78,LOC108267410,LOC103025717,LOC107554869,LOC107397001 coding downstream 15850 19388605 ~ 19393118 (+)
LOC113540663 cpz coding downstream 21400 19394155 ~ 19407627 (+)
LOC113540575 slc2a4,LOC100136445,LOC100136540 coding downstream 82271 19455026 ~ 19470962 (+)
LOC113540207 eif5a,LOC107691471,LOC106608670 coding downstream 108300 19481055 ~ 19485146 (+)
LOC113539894 bank1 coding downstream 279142 19651897 ~ 19694516 (+)
G67205 rpl34,LOC107573163,LOC107566275,LOC107681344 non-coding upstream 2476 19345844 ~ 19351904 (+)
LOC113540244 NA non-coding upstream 231756 19120838 ~ 19122624 (+)
G66887 NA non-coding upstream 442983 18911057 ~ 18911397 (+)
G66888 NA non-coding upstream 443892 18909646 ~ 18910488 (+)
G66865 NA non-coding upstream 490963 18859042 ~ 18863417 (+)
G67208 NA non-coding downstream 801 19373556 ~ 19375720 (+)
G67209 NA non-coding downstream 9798 19382553 ~ 19451392 (+)
G67227 LOC108267906 non-coding downstream 101740 19474495 ~ 19475474 (+)
G67236 h2afvb,H2AFZ,LOC103038819,LOC105895420,LOC101065890,LOC100694115 non-coding downstream 126454 19499209 ~ 19501228 (+)
G67262 NA non-coding downstream 171291 19544046 ~ 19641619 (+)
G66864 NA other upstream 495728 18856456 ~ 18858652 (+)
G66492 LOC108267609,LOC108437090 other upstream 1145816 18197312 ~ 18208564 (+)
frem1a frem1 other upstream 1210749 18113433 ~ 18143631 (+)
ctdnep1b ctdnep1,ctdnep1b,ctdnep1a,LOC108413724,LOC107659132,LOC107679908,LOC107747382 other upstream 1343418 18000158 ~ 18010962 (+)
LOC113539940 NA other upstream 1734301 17609492 ~ 17620079 (+)
dock11 dock11,LOC107683516 other downstream 617929 19990684 ~ 20067220 (+)
fcer1g LOC100305060 other downstream 775040 20147795 ~ 20154777 (+)
G68232 LOC108267516 other downstream 1647503 21020258 ~ 21033753 (+)
plag1 plag1,LOC107570635 other downstream 1941463 21314218 ~ 21323967 (+)
mettl4 mettl4 other downstream 2256321 21629076 ~ 21640157 (+)

Expression


Co-expression Network