Item | Value |
---|---|
gene id | scrib |
gene name | scrib |
gene type | coding |
species | striped catfish (Pangasianodon hypophthalmus) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_047598.1 |
NCBI id | CM018544.1 |
chromosome length | 33267568 |
location | 22377687 ~ 22468044 (-) |
genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
symbol | description |
---|---|
scrib | Enables protein heterodimerization activity. Acts upstream of or within several processes, including establishment of mitotic spindle orientation; morphogenesis of an epithelium; and nervous system development. Located in membrane. Is expressed in brain; neural tube; and secondary posterior lateral line primordium. Orthologous to human SCRIB (scribble planar cell polarity protein). |
description |
---|
PREDICTED: protein scribble homolog isoform X12 |
id | description |
---|---|
K16175 | SCRIB; protein scribble |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_026936602.2 | False | 8162 | mRNA | 0.52 | 47 | 22384110 | 22468044 |
XM_026936603.2 | False | 8159 | mRNA | 0.52 | 47 | 22384110 | 22468044 |
XM_026936607.2 | False | 8053 | mRNA | 0.52 | 45 | 22384110 | 22468043 |
XM_026936617.2 | False | 7765 | mRNA | 0.52 | 46 | 22384110 | 22468043 |
XM_026936618.2 | False | 7762 | mRNA | 0.52 | 46 | 22384110 | 22468043 |
XM_026936619.2 | False | 7759 | mRNA | 0.52 | 46 | 22384110 | 22468043 |
XM_026936621.2 | False | 7707 | mRNA | 0.52 | 45 | 22384110 | 22468042 |
XM_026936622.2 | False | 7704 | mRNA | 0.52 | 45 | 22384110 | 22468042 |
XM_026936625.2 | False | 7656 | mRNA | 0.52 | 44 | 22384110 | 22468042 |
XM_026936626.2 | False | 7653 | mRNA | 0.52 | 44 | 22384110 | 22468042 |
XM_026936627.2 | False | 7598 | mRNA | 0.52 | 43 | 22384110 | 22468041 |
XM_026936628.2 | False | 8047 | mRNA | 0.52 | 46 | 22384110 | 22468043 |
XM_034303904.1 | False | 8165 | mRNA | 0.52 | 47 | 22384110 | 22468044 |
XM_034303905.1 | False | 7221 | mRNA | 0.54 | 48 | 22377687 | 22468044 |
XM_034303906.1 | False | 8162 | mRNA | 0.52 | 47 | 22384110 | 22468044 |
XM_034303907.1 | False | 8108 | mRNA | 0.52 | 46 | 22384110 | 22468044 |
XM_034303908.1 | False | 8105 | mRNA | 0.52 | 46 | 22384110 | 22468044 |
XM_034303909.1 | False | 8102 | mRNA | 0.52 | 46 | 22384110 | 22468044 |
XM_034303910.1 | False | 8102 | mRNA | 0.52 | 46 | 22384110 | 22468044 |
XM_034303911.1 | False | 8090 | mRNA | 0.52 | 46 | 22384110 | 22468044 |
XM_034303912.1 | False | 8056 | mRNA | 0.52 | 45 | 22384110 | 22468043 |
XM_034303913.1 | False | 8054 | mRNA | 0.52 | 46 | 22384110 | 22468044 |
XM_034303914.1 | True | 8199 | mRNA | 0.52 | 48 | 22384110 | 22468044 |
XM_034303915.1 | False | 8029 | mRNA | 0.52 | 46 | 22384110 | 22468043 |
XM_034303916.1 | False | 8023 | mRNA | 0.52 | 46 | 22384110 | 22468043 |
XM_034303917.1 | False | 8124 | mRNA | 0.52 | 47 | 22384110 | 22468044 |
XM_034303918.1 | False | 7953 | mRNA | 0.52 | 45 | 22384110 | 22468042 |
XM_034303919.1 | False | 7912 | mRNA | 0.52 | 45 | 22384110 | 22468043 |
XM_034303920.1 | False | 7887 | mRNA | 0.52 | 45 | 22384110 | 22468042 |
XM_034303921.1 | False | 7704 | mRNA | 0.52 | 45 | 22384110 | 22468042 |
XM_034303922.1 | False | 7701 | mRNA | 0.52 | 45 | 22384110 | 22468042 |
XM_034303923.1 | False | 7698 | mRNA | 0.52 | 45 | 22384110 | 22468042 |
XM_034303924.1 | False | 7175 | mRNA | 0.51 | 40 | 22384110 | 22468038 |
XM_034303925.1 | False | 7420 | mRNA | 0.51 | 43 | 22384110 | 22468040 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
rgs9bp | LOC108268154,LOC103039154 | coding | downstream | 16534 | 22358195 ~ 22361153 (-) |
mcur1 | LOC108268156,LOC108440645 | coding | downstream | 23110 | 22345935 ~ 22354577 (-) |
dph2 | dph2,LOC105920302 | coding | downstream | 32036 | 22338753 ~ 22345651 (-) |
garem | garem1 | coding | downstream | 50879 | 22317465 ~ 22326808 (-) |
chpf2 | chpf2,LOC107724403,LOC107684493 | coding | downstream | 125303 | 22245230 ~ 22252384 (-) |
puf60b | puf60,puf60b,LOC108268151,LOC107742128,LOC107598708,LOC107659444 | coding | upstream | 2175 | 22470219 ~ 22482144 (-) |
ctnnd2b | ctnnd2,ctnnd2b,LOC107746909,LOC107686039 | coding | upstream | 77914 | 22545958 ~ 22627023 (-) |
LOC113540005 | NA | coding | upstream | 185569 | 22653613 ~ 22662482 (-) |
rgs20 | rgs20,LOC108440656,LOC107584260,LOC107746905,LOC107686043,LOC107664043 | coding | upstream | 211145 | 22679189 ~ 22701151 (-) |
emilin2a | LOC108268130 | coding | upstream | 369983 | 22838027 ~ 22851158 (-) |
G68923 | NA | non-coding | downstream | 188924 | 22188183 ~ 22188763 (-) |
G68907 | NA | non-coding | downstream | 203713 | 22170080 ~ 22173974 (-) |
G68758 | NA | non-coding | downstream | 431450 | 21945612 ~ 21946237 (-) |
G68752 | NA | non-coding | downstream | 530959 | 21846385 ~ 21846728 (-) |
LOC117597088 | NA | non-coding | downstream | 534106 | 21840481 ~ 21843581 (-) |
G69139 | NA | non-coding | upstream | 37746 | 22505790 ~ 22512310 (-) |
G69136 | march6,LOC107664076,LOC107732575 | non-coding | upstream | 47660 | 22515704 ~ 22519266 (-) |
G69183 | NA | non-coding | upstream | 181895 | 22649939 ~ 22652446 (-) |
G69203 | NA | non-coding | upstream | 209332 | 22677376 ~ 22677918 (-) |
G69233 | NA | non-coding | upstream | 303342 | 22771386 ~ 22772012 (-) |
G68760 | NA | other | downstream | 442518 | 21934526 ~ 21935169 (-) |
LOC113539989 | LOC108436138 | other | downstream | 1006677 | 21354619 ~ 21371010 (-) |
G68462 | NA | other | downstream | 1048437 | 21326046 ~ 21329250 (-) |
chchd7 | chchd7 | other | downstream | 1063790 | 21304692 ~ 21313897 (-) |
znf16l | LOC108268318 | other | downstream | 1552167 | 20778538 ~ 20825520 (-) |
LOC113540019 | LOC108268143 | other | upstream | 161571 | 22629615 ~ 22636088 (-) |
lrrcc1 | lrrcc1 | other | upstream | 824004 | 23292048 ~ 23306934 (-) |
retreg1 | fam134b | other | upstream | 862972 | 23331016 ~ 23346573 (-) |
LOC117597073 | LOC108267227,LOC108267226 | other | upstream | 1011921 | 23479965 ~ 23483850 (-) |
G69592 | LOC108267226,LOC108267227 | other | upstream | 1025335 | 23493379 ~ 23493919 (-) |