smchd1 (smchd1)


Basic Information

Item Value
gene id smchd1
gene name smchd1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21582222 ~ 21623632 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936632.2
gtgtgtgtgtgtgtgtcagtgtcagtgagtgtgtgtgtgaaagctcctGGGACCTTCAGGAACTCTGAGCTTCATGAAATGTCAACAGCAGTAACAAATAAGAGTTAGGCAGACATTTTGGACGTGGAGGAGTGAGGTATTTTGTTCAGGTTTGGggaaaatatgtatatataaaagcGTTTTGAGCTGTTTTGAGATAAGTGAAACCAACTGGAAACATGGCGGAGTCGGGAGTTCCCCCAGCCGAGGCTTCGCATGGCAGCCGGTCGGTTTGTGTCTTTGACTGTCGCCCTCAGAGTAAACAGGCTGCTGAAAAGATGTTGGATATCAGCGCCATGAGCTACAAACAGTTCCTGTGTGCTGTGCGCAAGgAATTTTCTATCTCGGTAAATGAAAGTTTTGTGATCACTACGACAGATCGCAGGGAGATCGATTCAGATGTTTTCGATGAAATACCAGATGGAAGAACTTTACACTTGCTACAGTCTGTGGATCAGGAGTTGGCTGTGGCAACTGAAGAACGAATTATGTACGTTCCGCATTTCCACACCATTGTACAGAGTGGCCAGTATGAGTACTATGCCAGCGAAGGACAGAAGGCACTACCCTACGCCTTTGCTGAGCTTATTGATAATGCACTTTCTGCAACCTCACATAATCCTGGAACCAGGAGCATCGACATAAGATTGtttTTTGATGAGTCTCAAGGTGGGCCGGCAGTAGTAGTGATGGATAATGGTCGTGGAATGACCTCTAAAGAGTTAAATAACTGGGCGGTTTATCGCCTTTCCAAATTCAATCGAGATGACCGCATTTTTAGGAGTGATGAATCAGGATATGTCCGTCCCAGTGCAGTTCCTCGCAGTCTGAACAGTGACATCTCCTACTTTGGCGTTGGAGGCAAACAGGCTGTGTTTTATATAGGCCAGTCTGTACGGATCATAAGTAAGCCAGTTGGTTCTCCAGATGTACATGAGTTTGTCATGTCTAAAGAAGACTTTGAACAGaaggagaaaaacaacaaagaaatttATTCTGGTATCATCCGAAACAGGAAGCCAGGAGATGACTCTCATGTGAGAGTGGATGAGGAGCGTTTCTTGCAAACTCTGTTTCTGGAAGAGAAAGGCAAGGAAAGTTTTACCACTATAGTCATAACTGCAGTCCAGCCAGAACATGTTACCTACCTAAAGCAGGATTTCGTCTCATGGACCAGAGAGCTGGTgcACATCTATCATTACTATGTTCATGGTATACATGGAAATGACACAAGACACATACAAACTCCTGAAACTGTGTCAAACATTGACATCCAGATCTGTCTAATTGATCGGCACACTCGCGTGCCAAGGGTACTTAATCTAAAAGACATAGACAATGACATGCAGACTCTTTATATAAAATCCAGTGTGGCAGAGTTTGAGTTTAATGCCAGCAAAGATGGAGATGCCAAAGTAGAGGGCCTGCTTAGGTATCATCCATTCCTGTACGATAGAGAAACCTATCCAGAGGACCCATATGCACCAGCTCCAGAGCCTGACGaagactgttttatttcacatgctGAGGGCCGAGGGAAAAGACCCATCTTTGAATGCTTTTGGAATGGACGACTAATTCCTTATTCTTCTGTTGATgaGTTTGATTGGTGTGCAAGACCCAAGAAAATCGGTTCAGTACCATTAGAATGTTATAACAGGATCTCGGGCGTTCTCTTCACTAATGACCGTTTTCAAGTCAGCACCAACAAACTCACATTTATGGATCTGGAATTACAGCTGCGTGACAAAAATACTATCTTTACAAGAGTAATCAATGGTCAGGAGCAAAGAGTGAAGATCAACCGAGAGTTCACAAATTGGTTGAAAGAGTGCCATGAAAAATATGATAAACAGGTGAGGTTCCTTGGTTTCCAAGGTGTAATGACTCGCACAGATGTGCAACCTAAACGCCTGCAGTCACCATGGGCTCAGTACAAAGCCATTGTGTGGGATGGTAAAACCTACAAAACTGGACAGCAGGTGAAAACAATGAAAACTCAGCCTATTCTTTATGGCACAGTAGTTCAGTTTTTGCTCTATGGGGACCATGAAGATGATGTCTATGCCACCGGGGGTCATGTTCAAATTGCACTGGAACCTAAGGAGGTGTACAATGAGGTCAGGATCATCCCCATTACTAAGATTGACAGACAGGCTACAGCTGCTGACATCAAGGAAAGCATTGAGAATGAACTGGACAAACTTCCTAATAAGCTGAGAGTCGCATGGCCAGAGGGAAACCCATGGCCTGACAAAGCTATTCAACCAGCTGGGACTCCCATggGTCCAATCCAAGTTGagattttgaataaaaaaggGGAGACAATGTCACGGTTGCCTGTTAATTCCAAGAAATTGCAGATTGAACTCAAGGTGGTCTGGCACTCTCCTAACGGGGATATCAAAACCAACTGTCACACTGGCGTGAACGCTAAGTGGCATTACTGGTTCAGAAAAATGGaaAATTTTAATAAGCTGGGGACATACACACTTCATCTGCAAACAATACTGAGTGATGGTGATTCCCCAACGAACGAGTGGGCTGGAAGACGACTGCCTCATTATACACTCAACTTCAGTATTAAAGAAAGCAGTGCAGCAGCTTTTGTGGTGGGTGTTGTTCCTTCTCCTGTTCAAGTGGGGGTACCCTTTGCGTTGCCCCTGCAATTTGCAGATGCATTTAATCATCCAACTCAGCCACCTTCTGGCATCAAACCCCAGCTAGAGTGCAGttCATTGAAACTGAGCTATGAACAGACAACTTCAAGTGGAACTACTTTCACCATACAAGACCTGAGAGCCATGGGTAAAGTAACCAACCATCAGGACAAGATACACACTGTAAAGGTAACGATCCCAAACCTCAACCCAGACTCCCAGTCTTTCCAGATTAGTGTTCGTCCAGGCCCTCCACATCAGCTGGTGGTGAAGCCTAAAGATGAAGTTTGCATAGAGAATGGCACACCAGCAGGATTCAGAGTAGAAGTTCAGGATGAGTTCCATAATATCACAACGCATTCCAAACTTATTGTCCGCTGCCAGttattcGGAGCCTCTGATTTGCCAGCTGACACTGTTGACTGCAGTAATACTGGTTCTGGTTTGCTGCTAGCAAAACCAATACAACTGAAGAACGTCACAACAGAGCGTATCCTCACTGCAAAATTTGGCATTCCtAATCAGAAGGCTGTGGCTTGTGTGGAGAGAACAGTTCGTATCTTGCCAAGCACCCGCGTCTTCCGTATAGAGATCTACAGACAAGAGGATGATTCGGATGATGTCATGGTGCTTCAGAATAAGGAGCGTATTAACTGGACGGCAGGTGACACACTCGGGAGTCTGCGCTTTAGACTTTATGATGAGGGGGGCAGGCAGGTGGCTTTAACACAGAGACTTGCCCATAACATAAAGGTGAACTGGGCTGCAGATATTAAAGCTGCAGAATTGGCAAAGGGAAGactaccatgtgtgtgtgtccccacaaaagcacatggagaacAATTTTATCAGGTGTCATTTCAGGATCAGCACACGGTTGACACATCCTTTACTATAGTcCCACGACCGGATGAGCCTGACCGCTTGAGGGTCACTCTCAGTGAGACAACTGTCAGGATGGGAGAAACTCTGTCTGGAAATATTTATGTTGAGGTGATTGATCAGTATGGCAATAAGACAGATGCTCTAAGTGCTGAGAGCATGAAGGCAGTCAGTGTGTCTGCAGATAACCTTGATGAATCAGCCCTGAATTTCGACTGGCAGacCAGTACAGGGACAATGGTGGTGACTGGCGTCCGCTTTGTAGAAGGCTTACCTGGTCCAAGGGAGTTGTGTTTTAAGTACCAGAATTTTGAGGAGTTTGTCAGAGTAAAAGTCACTGCTGGACCACCGGCAAAAATCACTCTGCTGGACGCTCCAGAACTGCCCTTACATGTTGTAAATGGACAAGGATTGAACACTCCATTCGTGCTACAGTTATGTGATGAGTGGGGAAATCCTGTTCCAGATCAGCGTGTTGTCATAGCAATGAAAACTCTGTCACCACAGCTTAAGATTAAATCATCGGTGATGTCCCAGCCTGTGAATACAGAAGGAAAGGCCAGCTTTATACTGGAGACCATAACAGCGACAATAGGAGAGCATGAGCTGGAGTTCCGAGGATCCTTTAGTAGAAGCAATACTATTTCTGGCCCAGTTGTGAAGCTGTGTGTGATGCCTGATCCCAACAACCCTGTTAGGCTTAGTGTAGAATACGACAGTGAAGCCATCTTAAGAGCAGGAGATACATTCCCTGTGTTCAAAGTAACTGTACTCTCTGAAGAGGGTGGACCTGTGAAGAATGTGAGTCCATCCAGTCTGTCCATGCTGCTGTGGCAAGGCGTGGCTTCAGGATCCCGCCCTCCACCTGAGGCAATGGCACTTAAATGTAGTAAACCCAAGGACAAGGAAAATGATGACCACTTTTACTTCAGagataaagagattCCTGTCAGAGTGGGAAAGTACatggtgcagtttttttttgctgtagaaAAAAGCAAGTCCCTCTGGAGCAGTCAGATTGCTCTGAACATTGTTGCGAATAAACCAGTGAAACTCGTCCCAGACACTCCCAATTCAACTCCTGTGGTCTCCAACAGCAGCACTCTAGCCGATCGAACTCTTCTTGAAATGCTATCCTTGAAGATTATGgatgagCACAATAACCCAGCTGGTATGGGGATTAATGGAAAGGTGATTCTGACTGTGACAACTGCTGATGGTGATGATGCAGAAGATCTTCCTATGTTTGAGAACAAGGCCAAGAGTCTAAAATACGATCTTATTAATGGAGAGACTCTTAtcactgacttAGCACTTATGGAGAATAGTCCAGGGACCGATGGAGCCGTGTACGTTCTCCAGTTCCGTCCAGTGCTTGAAGGCCCTAAATCTAAGGCCATCATCCCTCCTTTTAATTTGCCCTTCAGGTTCTACAACGatGCAGAGAACCAGAAAGTTATGGCTGCTATGAGTAAGAAGAAAGACCAGCTGTCTCGATCTATTGAAGTCTACAAAGAAATTTTggagacaaacaaacaactcaCATCTGAACTCACGGgtCAAGTGCAAGATGCATCTAGCAAAGAGTCTCAGCTGAAAGTGGAGATCAGGAAAACTGGCATAGATATTTCAAAATTAACTGATGTGACGTCAATTGAGGGTTTAGTTGCGCAGATGACTGCAGATTTGGAGAGGCTACAGAATCTGCCCCGTCGAAAATGTACCATGCCTGATCCATTCAGAGGCAGCCAAGATGTCCtaggaaagATAGCACACCTGGCACTGGTGAAGGATGATGATGCAGCAAAGGTCATTTCCTGGCATCTTCTTGGTGACATGGACTGTGTGGTTACCGTGACAAcagctgcagcaaaaaaaatctatgatgAAACGCAAGGACGGCAACAAGTCATGCCCCTAGAGACAATTTTCTGGAAACCAAATAGCAGgCCATTGCCCCACATCAGGAATGGTCAAAGTTTGTTCCGTCCATTAGGAAACCCTGTGTTTGTCAGAGATCTGCTCATTTTTCCTGAGCATGCAGAAAGCTGCAACATGGTCTTCTCGATTCTTCTTGGAGACACCATATTAGTGGACGATTTGGATTCCGCTAACCATTACCGCAAGGGGGTTGTCCAGAGTAAGGTGCAGTGCCCTACTCTGCTGACACGGCAAGGGGAGCGTATCCGTAGCAACGGGAAGTTTGGTGGTTTACAAAACAAGGCTCCACCAATAGAGAAGTTGAGAGGACATGTGTTTGGAGCGCCACTGCCTCAAGATTATTACACCATCTGCAAGCAGAAGGagttgCTGCAGCAGTACTCTGTAGCAGTACAAAATGCATTGAAGGTCAAGGCTGATTACGACTACCATGTGGAGTATCTGCAGAGTCCTAAGATGAAACTGACGCAGCAGGAGCTCCAACAGCAAGAGAAGGAGCTCAGAGACATAGAGAAAAAACTTACCAGCACTCCTGTACGCACTTCTCCCGGTTCAGTAAAACGAAACCTTCAAGACGAGGTTGATGAGTCTCTTCCGGCAAAAAGGATTCGACGTAAAACCCGCAAACTACTGGATTCTTAAATGGCATCATCTCAGACCAAGATgtaaaataatcacaaaataaaGTGCTTATATTAACTGCTGCAACATGGATGAATTTTAGAAAAAGATGTTTATGTtcaatgtgaaatattttctatcaaagagtgaaagagtgtatttctgttttctgtctttagGACCTGTTTTTAGTTGGagcatttttattagtttttttgatatatataaaagtaactACTATCGTTACATATTTTGTATGTCAAACTGATTCTCTTTGATTTAAATGGAAAGGGAACTTAAGTTATGGACCATGTCCACTCTGAcctttgtatgtttttgtatctgaagaaaaaaggaaaatatatgt

Function

symbol description
smchd1 Predicted to enable ATP binding activity. Acts upstream of or within with a positive effect on definitive hemopoiesis. Acts upstream of or within embryonic cranial skeleton morphogenesis. Predicted to be located in chromosome. Is expressed in blood cell; caudal hematopoietic tissue; intermediate cell mass of mesoderm; and posterior lateral mesoderm. Used to study choanal atresia. Human ortholog(s) of this gene implicated in facioscapulohumeral muscular dystrophy 2. Orthologous to human SMCHD1 (structural maintenance of chromosomes flexible hinge domain containing 1).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K23113 SMCHD1; structural maintenance of chromosomes flexible hinge domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936632.2 True 6513 mRNA 0.44 49 21582222 21623632

Neighbor

gene id symbol gene type direction distance location
emilin2b LOC108267875 coding downstream 1679 21554526 ~ 21580543 (-)
myl12.1 LOC108267514,LOC101069867,LOC108436131,LOC103377455,LOC101484951 coding downstream 89886 21488187 ~ 21492336 (-)
fastkd3 fastkd3 coding downstream 96409 21480615 ~ 21485813 (-)
LOC113540027 rgs20 coding downstream 151642 21427185 ~ 21430580 (-)
trnaa-ugc NA coding downstream 163983 21418168 ~ 21418239 (-)
adcyap1a LOC108268182 coding upstream 106563 21730195 ~ 21735758 (-)
tyms tyms coding upstream 125203 21748835 ~ 21757727 (-)
hacd1 hacd1,LOC107702201,LOC107571282,LOC107568855 coding upstream 154244 21777876 ~ 21785375 (-)
nsun6 nsun6 coding upstream 293581 21917213 ~ 21933593 (-)
chpf2 chpf2,LOC107724403,LOC107684493 coding upstream 621598 22245230 ~ 22252384 (-)
G68585 NA non-coding downstream 80789 21496932 ~ 21501433 (-)
G68577 NA non-coding downstream 106446 21474587 ~ 21475776 (-)
G68520 NA non-coding downstream 109190 21472819 ~ 21473032 (-)
G68519 NA non-coding downstream 110383 21471632 ~ 21471839 (-)
G68495 NA non-coding downstream 174015 21407111 ~ 21408207 (-)
G68740 mrc1 non-coding upstream 204641 21828273 ~ 21828833 (-)
G68741 NA non-coding upstream 206444 21830076 ~ 21830642 (-)
G68743 NA non-coding upstream 211590 21835222 ~ 21835426 (-)
G68744 NA non-coding upstream 212138 21835770 ~ 21835995 (-)
LOC117597088 NA non-coding upstream 216849 21840481 ~ 21843581 (-)
LOC113539989 LOC108436138 other downstream 211212 21354619 ~ 21371010 (-)
G68462 NA other downstream 252972 21326046 ~ 21329250 (-)
chchd7 chchd7 other downstream 268325 21304692 ~ 21313897 (-)
znf16l LOC108268318 other downstream 756702 20778538 ~ 20825520 (-)
snrpf snrpf,LOC106609479,LOC107738052 other downstream 1616371 19962582 ~ 19965851 (-)
G68760 NA other upstream 310894 21934526 ~ 21935169 (-)
LOC113540019 LOC108268143 other upstream 1005983 22629615 ~ 22636088 (-)
lrrcc1 lrrcc1 other upstream 1668416 23292048 ~ 23306934 (-)
retreg1 fam134b other upstream 1707384 23331016 ~ 23346573 (-)
LOC117597073 LOC108267227,LOC108267226 other upstream 1856333 23479965 ~ 23483850 (-)

Expression


Co-expression Network