pygmb (pygmb,pygm,LOC108267457,LOC108434859)


Basic Information

Item Value
gene id pygmb
gene name pygmb,pygm,LOC108267457,LOC108434859
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 12150419 ~ 12168101 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936673.2
CGATTCAGCGCTACTGCAGCagcttagagagagagagagagagaggagagagagagagagagattaaagcGTCGCGTCCCTGCAGCTCACTGTCTTCTCTGAAATAAAGCCTCTCATCCTGTCACCATGCCCAAGCCTCTGACTGACCAGGACAGGAGGAAGCAGATCTCAGTGCGCGGCCTCGCAGGGGTGGAAAATGTCGCCGACCTGAAGACCAACTTCAACCGGCACCTGCATTTCACCCTGGTCAAGGACCGCAATGTGGCCACGAAACGGGATTACTACCTGGCGCTGGCCAACACCGTGCGGGATCACCTAGTGGGCAGATGGATCAGGACACAGCAGCATTACTACGAGACGGACCCGAAACGTGTGTACTACCTCTCTCTGGAGTTCTACATGGGCCGCACCCTGCAGAACACCATGGTAAATCTGGCCCTGGAGGGAGCCTGCGATGAGGCCACCTACCAGCTGGGCCTGGATATGGAGGAGCTGCAGGACATTGAGGAGGACGCAGGCCTGGGCAACGGAGGCCTCGGCCGTCTGGCAGCTTGCTTCCTCGACTCAATGGCGTCTCTGGGCTTGGCAGCTTATGGTTACGGAATCCGTTATGAGTTTGGCATTTTCAACCAGAAAATTGTCAATGGTtggcagGTTGAGGAGGCAGATGATTGGCTGCGCTATGGTAACCCGTGGGAGAAGGCCCGCCCCGAGTACATGCGCCCTGTGCACTTCTACGGCCGAGTGGAGCACCATCCTGATGGAGTCAAATGGGTAGACACACAGGTGGTTCTGGCCCTGCCGTATGACACTCCAGTGCCTGGATACAGAAACAATGTTGTTAACACCATGAGACTGTGGTCAGCCAAAGCCCCCTGCGAATTTAACCTCAAGGACTTTAATGTTGGTGGCTACATCCAGGCTGTTCTGGACAGGAATCTGGCTGAGAATATTTCCCGTGTGCTCTACCCCAATGACAATTTCTTTGAGGGAAAGGAGCTCCGTCTCAAACAGGAGTACTTTGTGGTGGCCGCAACTCTTCAGGACATCATCCGCCGTTTCAAGGCCTCTAAGTTCGGCTCGACGGAGCTGGTGCGCACGGACCTGACCAAGTTACCTGACAAGGTGGCCATCCAGCTGAATGACACACACCCAGCCCTCGCCATCCCCGAGCTGATGAGGATCCTGCTGGATGAGGAGAAAGTGTCCTGGGAAACAGCATGGGACATCACCGTGCGTACCTGTGCCTACACTAACCACACCGTCCTTCCAGAGGCTCTGGAGCGTTGGCCTGTTGACCTGTTCCAGAACCTCCTGCCTCGCCACCTGGATATCATCTTCGAGATCAACAGGCGCCACCTGGAGCGAATCTCCTCTCTGTACCCCAACGATAATGACCGTTTGAGGCGCATGTCTCTGATCGAAGAAGGAGGACTGAAGAAGATCAACATGGCTCATCTGTGCATCGTTGGCTCTCATGCTGTAAATGGCGTGGCTCGAATCCACTCAGAAATCATCAAAAACACAGTGTTTAAGGACTTTTATGATCTGGACCCACAGAAGTTCCAAAACAAGACCAACGGCATCACCCCTCGCCGCTGGCTGGTCATGTGCAACCCTGGCCTGGCGGAAGTCATTGCTGAGCGGATCGGTGAGGACTACATTCGTGATCTGGATCAGCTGAAGAAACTCCTGGAGTTTGTGGATGATGAGGCCTTCATCCGAGACGTTGCCAAGATCAAACAGGAGAATAAGATGAAATTTGCTGTGCACCTTGAAGAGCATTATAAGGTGAAAATCAACCTGAACTCCATGTTTGATATTCAAGTGAAGAGGATCCATGAATACAAGAGGCAGCTGCTGAACTGCCTGCACATCATCACGCTCTACAACCGCATCAGGAAGGAACCCAACAAGGCCTGGACACCCAGGACGATTATGATCGGAGGAAAGGCTGCTCCAGGCTACCACATGGCTAAGATGATCATTAAGCTCATCACGTCTATTGGAGAGGTGGTGAATAACGACGCGGTGGTGGGAGACCGCCTTAAAGTCATCTTCCTGGAGAACTACAGGGTTACACTGGCTGAGAAAGCAATCCCAGCAGCTGATCTCTCTGAGCAGATCTCCACTGCAGGGACAGAAGCTTCTGGAACAGGAAATATGAAGTTCATGTTGAATGGCGCTCTGACCATCGGCACTATGGATGGAGCCAATGTGGAGATGGCGGAGGAGGCCGGAGAGGAAAACCTCTTCATCTTTGGCATGAGAGTGGAGGATGTCGAGGCCTTGGATAagaaaggGTACAATGCTGCTGAGTATTACAGCCGTATCCCAGAGCTCAAGCAAGCCATTGATCAGATTTCTGGAGGATTCTTCAGTCCCAGTCAGCCAGACCTCTTCAAGGACATTGTCAACATGTTAATGAATCATGACAGATTCAAAGTATTTGCTGACTATGAGGACTACATTAAATGCCAGGACAGAGTTAGCGCTCTGTACAAGAACACAAAGGAATGGACCAAGCTGGTGATCCACAACATTGCTGGTTGTGGCAAGTTTTCCAGTGACAGGACCATCTCTCAGTACGCCCGTGAGATCTGGGGTGTGGAGCCGAGTTTGGAGAAGATTGCCGCTCCAGACGACCCTCGCTAGGCAGCTACTCAGCATTCAGAAGCTCTTTTCACTGGAGTTGTTCTCACATTTAGttaatttctgcagtgtggttGTGGACCTGTGTCTATGTGATTCTGTCTCTGTTTGATTGTGTAACCAATGTCTCCCTGTCCTGTGAGATCTGTTTCCCCGGTGGCCTCAGTTTCAGAAGTTACCGTCCCGCTTTCTGTGCGGTGTGTAATAACACGAGAAAGGAATGTTTTATTGATGTTAACTGATACTACCTTTCAGATGAAGTAAAATCTATGTAGCGTCAGTTTGGGAACAGTAAGCTAagcatttaaatagttttaatataTGTTTGAATGTATCATTGTGGTCCGTCTAGTTTGTCTTCCTCTCATTAACCAAAGAACAACCCAGTTATGGAGAGTTCACATGGACCCACTGTGACGTATAGAGCAGCCAGTGAAGCTTTGACTCTGTCTGTCCACGTCTCATATTCAGCTACATGGATGACTGTTACTTGCTTGGGCTCATTGAGATATTCCTGCATGATTTGGTGTGTAgtgtttctgaagtgttttatcatgtttttaatattaatagagGCTGTTCAttaatcacatcacatcacacaaacTGACATTCAGTCATTAAAGCTCACTTGCTGTTCATAATATTCATGTAAATCTCACAAAAAGCATGGAGATGTAGTGTGGCACCTCTACATACATGCTGTATTGTACTGTCTTTGCTCCTGCACTCTCAGTTTAACAGCAAGCGAAGGAAAGCTGCCTTAgtctgtgtgtgaacatgtgtgctAGTGTGTATGACAGCCTATAGATGATGCAGCTTCCACCGATCTGTACTAGCCCTCAGCGTAGACACTGGTGAACAAGCCACTTTAAATAAACTTATAGATTTCTAATTTATGCTTAATATATATAGAAGTTTTAAGAGTGTCTGTTTTAAACAAAGTATTCTCACTGGAGTGTGGAAAATACTAAAGTGtgttatatcattatataatattattaataatagtcAACTAAGAGATGGCTATATGTATATGACTATAAGTTATGGCAGTTTGGAACTGTGCCTCTAGTGTACTCTGAATGTTATTCCTCTGTTGGTTGTAATAGCTGACAGATCATACAACATGGGCCAATATCTCTCACAGAAAACCAactcaaaataataattaaataaagtataccACACAACACA

Function

symbol description
pygmb Predicted to enable glycogen phosphorylase activity and pyridoxal phosphate binding activity. Acts upstream of or within carbohydrate storage and skeletal muscle fiber development. Predicted to be active in cytoplasm. Is expressed in several structures, including eye; heart; immune system; integument; and muscle. Human ortholog(s) of this gene implicated in glycogen storage disease V. Orthologous to human PYGM (glycogen phosphorylase, muscle associated).
pygm Predicted to enable glycogen phosphorylase activity and pyridoxal phosphate binding activity. Predicted to be involved in glycogen catabolic process. Located in extracellular exosome. Implicated in glycogen storage disease V.

NR:

description
PREDICTED: glycogen phosphorylase, muscle form

GO:

id name namespace
GO:0005975 carbohydrate metabolic process biological_process
GO:0008184 glycogen phosphorylase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function

KEGG:

id description
K00688 PYG, glgP; glycogen phosphorylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936673.2 True 3849 mRNA 0.48 20 12150419 12168101

Neighbor

gene id symbol gene type direction distance location
clcn5b LOC108267828,LOC108434858,LOC107557080,LOC107715429,LOC107733513 coding downstream 1927 12125821 ~ 12148492 (-)
ccnb3 LOC108267136,LOC108410408 coding downstream 67208 12069043 ~ 12083211 (-)
zgc:109889 zgc:109889,LOC108267204,LOC108434857,LOC105007310,LOC107742291,LOC107562726 coding downstream 290306 11834368 ~ 11860113 (-)
si:dkey-172j4.3 LOC108434852,LOC108267497,LOC107753941,LOC107742290 coding downstream 353819 11717345 ~ 11796600 (-)
rab39bb rab39b,LOC103045353,LOC107742286,LOC107753937,LOC107691951,LOC107562605,LOC103034714 coding downstream 523574 11622885 ~ 11626845 (-)
sf1 sf1,LOC107753954,LOC107691964,LOC107562691,LOC107588130 coding upstream 2424 12170525 ~ 12182262 (-)
rbm4.1 LOC108267459,LOC106608592 coding upstream 17423 12185524 ~ 12189447 (-)
LOC113540082 LOC108267460 coding upstream 22721 12190822 ~ 12194683 (-)
rbm4.3 rbm4.3,rbm4b,LOC108267461,LOC107576930,LOC106577685 coding upstream 27416 12195517 ~ 12199352 (-)
ponzr6 LOC108267463 coding upstream 44886 12212987 ~ 12221939 (-)
G63174 LOC108268320,LOC103041464,LOC108410411,LOC105029413,LOC107562848,LOC107691962,LOC106578044 non-coding downstream 27409 12067332 ~ 12123010 (-)
G63062 NA non-coding downstream 146100 12004007 ~ 12004319 (-)
G63058 NA non-coding downstream 177472 11972711 ~ 11972947 (-)
G63031 NA non-coding downstream 252318 11897845 ~ 11898101 (-)
G63015 NA non-coding downstream 282716 11867450 ~ 11867703 (-)
G63219 NA non-coding upstream 157359 12325460 ~ 12325671 (-)
G63267 NA non-coding upstream 186291 12354392 ~ 12355772 (-)
G63502 NA non-coding upstream 499340 12667441 ~ 12670500 (-)
G63555 NA non-coding upstream 541528 12709629 ~ 12709841 (-)
G63578 NA non-coding upstream 599848 12767949 ~ 12797341 (-)
htr2cl1 LOC108267122,LOC108434824 other downstream 183516 11862625 ~ 11966903 (-)
LOC117597110 LOC108267738,LOC108267739,LOC108267931,LOC108267932,LOC108267938,LOC108261673,LOC108267241,LOC108267937,LOC108267740,LOC108267935 other downstream 615176 11524826 ~ 11535243 (-)
si:dkey-183c6.7 LOC108267942 other downstream 734522 11402027 ~ 11415897 (-)
LOC113540328 LOC108267738,LOC108267931,LOC108267739,LOC108267932,LOC108267933,LOC108267740,LOC108261673,LOC108267241,LOC108267937,LOC108267929 other downstream 790375 11266384 ~ 11360044 (-)
si:dkey-165a24.9 si:dkey-165a24.9,LOC108267153,LOC108434867,LOC105903083,LOC107572570,LOC107753961,LOC107659726,LOC107588125 other upstream 78861 12246962 ~ 12249754 (-)
LOC113539775 NA other upstream 104117 12272218 ~ 12277669 (-)
tmem256 tmem256,LOC107659713,LOC107564775,LOC107560291 other upstream 316622 12484723 ~ 12489562 (-)
acap1 acap1,LOC107731905,LOC107683535,LOC107595305,LOC107675497 other upstream 1117898 13285999 ~ 13308478 (-)
zgc:194312 LOC108267841 other upstream 1267955 13436056 ~ 13440520 (-)

Expression


Co-expression Network