rell1 (rell1)


Basic Information

Item Value
gene id rell1
gene name rell1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 14648948 ~ 14674373 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936676.2
GGTAATATTTTGGTGAACAGGAAGACAGCGTCGTCAGTCTGCGTTGTTTAGTTGTTACAGTTGTACCACATTTCCCATGATCCACTTGACCCCTAACTTCCACGCTATAAGCCTGGGAGGAAACGCACTGCACTCTGGAGTTCCATCTGCTGTGAGGAGGAGTGcgtcttttctcttttaaatctgtgttttaATTCAAAACTAGTCTCGTAATTATTATACgtgagtgtttttcttttttaaataccaaattAACACTCGTAACTCCGAGGAGGTGTAGTCgtgtatccacacacacacacacacacacacacacactcagagcttCACGTTACAGAGTGGGAAGTTCCTCAAACAGCTCGACTCAAGAAGAATGAGGAAACACCAGCAAACCTCAGACTCCGAGTTTAGCTAGCAGGTAACCTCCCGGCTCTACTATCTGCCCGACTCTTCCGAGCCTGAACACGGCGGTTTGGCTCCTGTGAGGCTCAGGACTCTTCTCTCAGCCCCATGGCGGATCCTGCAGTGAGCGTCAGTGCGACACCAGGGAACAAAACGGATAATGGAGGGATGGTGCACGGCAGCTCAGCTGAGTACATAGCCTTCGGCCTGGTGCCCGTCTTCTTCCTCCTAGGCTTGCTGGGCATGTTAATCTGCCACATACTGAAGAAGAAGGGGTATCGCTGCACCACAGATGCTGAGGAACCAGATGAGCctgagggagaggaggagaaacatCTGGAGGACGGAGATATGAATGACACCTTCAGTGAGGGCAACACAGACACCGTGGGCCAGATCGTTCACTATATCATGTCAAATGAAGCCAACACAGATGCCCTGAAGGCCATGGTTACTGAGAACAGCACAGACTCTGATGGcACTCCTATAACACCTACCACGCCTGCTCCTGCAACCCCTGTGAGCCCTGTGTCACCCGGAGCTCCTGCCGCAGCAGCCAAACACACCTGTAACCACCTTCACACCATCGGCGGAGTGGTGGGGCACAGCAACATGTGTAACCGCTGTAATCAGAAGAAATGGCCCCTCATGCGGCGCGGCTCCAACAAGAAAGTGGAGAGGCGCGCCCATGCTGGAGAAGTCACTGTGCTGGCAgttggcagGTTCCGTGTGACTAAAACTGACCCACGGCCGGCCCGGGAAAGACGCAGCCTGCTGATCACTGAGCCTAACGGCAGTGTCCCTGCCACGCCGGTAAAGACTGAGGCAGCTCCACTGAACAGCAGCACAGATGCACAGCCTAAGGCAGAGGCTGATGATAAAAAGTGATTGTGGGGGAGAAGCAATATCTGTTCAAGTATAGTCAAGAGaaaattttaaacatgttttaaaccCTACCACAGCACTGACAGCAGAGAGGGAGGAAGTAACTCCAAGGCCCCAAAGACAAGATGGAGGTAAAAGATGgttagaaagaagcaaaatgcaTAGGACTTTTAATTTGAACTGCAGTATTAGACTCCAATCTCTTGCCACTGGGGTTTGTTTGTGTATCTGGGCAGGGAGGAGGAACACGCACCAGTTTGTCAGAGTTATTCCATCACCGTGTCATTCCTCCctttataaacacactgcatcatTAACCACGCACGGAGtcgttttgtacattttaatggCTGCGAGCATATCAATGGTTAATCCACAGTCAAACATACGCTCACATTACATTGTAGACTCCAGAATGGTTATGTGACCCAAGGTCATGTGACTCGGTCTACTACTTCCAAGAAGCAGGGACGTTTTTTTTAGCGTATTCTTTTCAGTTTGATCACTACGGAGAACCATAAAACCACCTTGGGTACAAATTTAACAAAGCACATGTCTGAATGCATCACTGTGTATGACCCTGTTCTACCTGTCCACCAGGTCATTGGTTTTATATTGCTTTGCCAAACCCTTTGTGCCTTTAACCAGATCAGCTAGATGTTTAATGTAAGCCAGTGTCTGCCAAATTGTCTGTTTATTACTCTTAGTGTGGCAAAACTCTTAGTGTGCTTTGTGTTTAGGATATACGTAGTTTTATGATGTAGTCTCCATCCTGGTATAAAACGCCATTGTTAGTGCTCTATACTTTCCCAAATGTCCTCTTGAAGCCATATGCAACAGTATATAGTgatgcaaataaacaaatcctgctaaaatgtagaaagaaaaaagggacaaaaactCTAGAAAATGATATGGGGAGCTTCTGTGTAAAATATAGTCACAATTCGCTAGTCATAAAATCGCTTCCTTCAGTAGTTCTTTAGGAAAATGTTGCACCAGATTACCCAGACTGCATGGTTTATTCACATTTTATGTACCTGTCTGGTTACCTCATACAAtaaaaagcagtgtgtgtgataatctaatacaaatacataaggaatacaataatattattatattattcatcTACTCTCATACTGTTTCCTGTTCTGTACTTAACCAGtagttaaagttaaaaaaaaaaatctagattcAGTACAGTTTAGCCAACACACATTTGccaatacatttattatatgaaTTGTATGAGGAAATTGAGGAGGTGTGTGGGGGAGAAAAAGTGGTGAATGGTTTGTGAAATTTAAGTGCACTTTTGTTAAAATGTTAcccaaaataataaaacagtaatacGTTTTGGGGCTTTGTACATCTACAGCAAACATCGCAATACTTTTCTCACAGATAATCGATGACCGCAATTACAGTTACAAAGTTTTATTTTggcttgaggaaaaaaaaaaagagtgccaTCTAATTGCATATTATTCGTaaagtgtatttatataatataa
>XM_026936677.2
TACGTGATATATTTCGGTAATATTTTGGTGAACAGGAAGACAGCGTCGTCAGTCTGCGTTGTTTAGTTGTTACAGTTGTACCACATTTCCCATGATCCACTTGACCCCTAACTTCCACGCTATAAGCCTGGGAGGAAACGCACTGCACTCTGGAGTTCCATCTGCTGTGAGGAGGAGTGcgtcttttctcttttaaatctgtgttttaATTCAAAACTAGTCTCGTAATTATTATACgtgagtgtttttcttttttaaataccaaattAACACTCGTAACTCCGAGGAGGTGTAGTCgtgtatccacacacacacacacacacacacacacactcagagcttCACGTTACAGAGTGGGAAGTTCCTCAAACAGCTCGACTCAAGAAGAATGAGGAAACACCAGCAAACCTCAGACTCCGAGTTTAGCTAGCAGGTAACCTCCCGGCTCTACTATCTGCCCGACTCTTCCGAGCCTGAACACGGCGGTTTGGCTCCTGTGAGGCTCAGGACTCTTCTCTCAGCCCCATGGCGGATCCTGCAGTGAGCGTCAGTGCGACACGGAACAAAACGGATAATGGAGGGATGGTGCACGGCAGCTCAGCTGAGTACATAGCCTTCGGCCTGGTGCCCGTCTTCTTCCTCCTAGGCTTGCTGGGCATGTTAATCTGCCACATACTGAAGAAGAAGGGGTATCGCTGCACCACAGATGCTGAGGAACCAGATGAGCctgagggagaggaggagaaacatCTGGAGGACGGAGATATGAATGACACCTTCAGTGAGGGCAACACAGACACCGTGGGCCAGATCGTTCACTATATCATGTCAAATGAAGCCAACACAGATGCCCTGAAGGCCATGGTTACTGAGAACAGCACAGACTCTGATGGcACTCCTATAACACCTACCACGCCTGCTCCTGCAACCCCTGTGAGCCCTGTGTCACCCGGAGCTCCTGCCGCAGCAGCCAAACACACCTGTAACCACCTTCACACCATCGGCGGAGTGGTGGGGCACAGCAACATGTGTAACCGCTGTAATCAGAAGAAATGGCCCCTCATGCGGCGCGGCTCCAACAAGAAAGTGGAGAGGCGCGCCCATGCTGGAGAAGTCACTGTGCTGGCAgttggcagGTTCCGTGTGACTAAAACTGACCCACGGCCGGCCCGGGAAAGACGCAGCCTGCTGATCACTGAGCCTAACGGCAGTGTCCCTGCCACGCCGGTAAAGACTGAGGCAGCTCCACTGAACAGCAGCACAGATGCACAGCCTAAGGCAGAGGCTGATGATAAAAAGTGATTGTGGGGGAGAAGCAATATCTGTTCAAGTATAGTCAAGAGaaaattttaaacatgttttaaaccCTACCACAGCACTGACAGCAGAGAGGGAGGAAGTAACTCCAAGGCCCCAAAGACAAGATGGAGGTAAAAGATGgttagaaagaagcaaaatgcaTAGGACTTTTAATTTGAACTGCAGTATTAGACTCCAATCTCTTGCCACTGGGGTTTGTTTGTGTATCTGGGCAGGGAGGAGGAACACGCACCAGTTTGTCAGAGTTATTCCATCACCGTGTCATTCCTCCctttataaacacactgcatcatTAACCACGCACGGAGtcgttttgtacattttaatggCTGCGAGCATATCAATGGTTAATCCACAGTCAAACATACGCTCACATTACATTGTAGACTCCAGAATGGTTATGTGACCCAAGGTCATGTGACTCGGTCTACTACTTCCAAGAAGCAGGGACGTTTTTTTTAGCGTATTCTTTTCAGTTTGATCACTACGGAGAACCATAAAACCACCTTGGGTACAAATTTAACAAAGCACATGTCTGAATGCATCACTGTGTATGACCCTGTTCTACCTGTCCACCAGGTCATTGGTTTTATATTGCTTTGCCAAACCCTTTGTGCCTTTAACCAGATCAGCTAGATGTTTAATGTAAGCCAGTGTCTGCCAAATTGTCTGTTTATTACTCTTAGTGTGGCAAAACTCTTAGTGTGCTTTGTGTTTAGGATATACGTAGTTTTATGATGTAGTCTCCATCCTGGTATAAAACGCCATTGTTAGTGCTCTATACTTTCCCAAATGTCCTCTTGAAGCCATATGCAACAGTATATAGTgatgcaaataaacaaatcctgctaaaatgtagaaagaaaaaagggacaaaaactCTAGAAAATGATATGGGGAGCTTCTGTGTAAAATATAGTCACAATTCGCTAGTCATAAAATCGCTTCCTTCAGTAGTTCTTTAGGAAAATGTTGCACCAGATTACCCAGACTGCATGGTTTATTCACATTTTATGTACCTGTCTGGTTACCTCATACAAtaaaaagcagtgtgtgtgataatctaatacaaatacataaggaatacaataatattattatattattcatcTACTCTCATACTGTTTCCTGTTCTGTACTTAACCAGtagttaaagttaaaaaaaaaaatctagattcAGTACAGTTTAGCCAACACACATTTGccaatacatttattatatgaaTTGTATGAGGAAATTGAGGAGGTGTGTGGGGGAGAAAAAGTGGTGAATGGTTTGTGAAATTTAAGTGCACTTTTGTTAAAATGTTAcccaaaataataaaacagtaatacGTTTTGGGGCTTTGTACATCTACAGCAAACATCGCAATACTTTTCTCACAGATAATCGATGACCGCAATTACAGTTACAAAGTTTTATTTTggcttgaggaaaaaaaaaaagagtgccaTCTAATTGCATATTATTCGTaaagtgtatttatataatataa

Function

symbol description
rell1 Predicted to act upstream of or within positive regulation of p38MAPK cascade. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RELL1 (RELT like 1).

NR:

description
RELT-like protein 1, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936676.2 False 2804 mRNA 0.44 7 14648948 14674358
XM_026936677.2 True 2816 mRNA 0.44 7 14648948 14674373

Neighbor

gene id symbol gene type direction distance location
pcxb pcxb,LOC108267638,LOC108428573,LOC107721657,LOC107661964,LOC107583287,LOC107661088 coding downstream 145119 14298897 ~ 14503829 (-)
plcb3 plcb3,LOC108267602,LOC108428576 coding downstream 428660 14157436 ~ 14220288 (-)
cct7 cct7,LOC107697251,LOC107721663,LOC107691460,LOC107583281,LOC107744273 coding downstream 561967 14079705 ~ 14086981 (-)
LOC113539907 paip2b,LOC103027680,LOC108428580,LOC107721669,LOC108426126 coding downstream 594913 14041951 ~ 14054035 (-)
dok1b dok1 coding downstream 615908 14018458 ~ 14033040 (-)
rwdd rwdd4,rwdd,LOC107658349,LOC107721653,LOC107661961,LOC107757904 coding upstream 2070 14676443 ~ 14680843 (-)
trnae-cuc_13 NA coding upstream 60283 14734656 ~ 14734727 (-)
lrch4 LOC108267880,LOC108428567 coding upstream 99625 14773998 ~ 14809362 (-)
pcolceb pcolce2,pcolceb,LOC108428564,LOC107684948,LOC107750313,LOC107711558,LOC107557504 coding upstream 157391 14831764 ~ 14840438 (-)
per1b per1b,LOC108428562,LOC107711564,LOC107557521,LOC107677837,LOC107596478 coding upstream 167100 14841473 ~ 14874552 (-)
LOC117597192 NA non-coding downstream 16195 14622036 ~ 14632753 (-)
G64461 NA non-coding downstream 353249 14295494 ~ 14295699 (-)
G64440 NA non-coding downstream 395185 14250611 ~ 14253763 (-)
G64434 NA non-coding downstream 418120 14178574 ~ 14230828 (-)
G64291 NA non-coding downstream 607660 14040666 ~ 14041288 (-)
G64860 NA non-coding upstream 187551 14861924 ~ 14862199 (-)
G64929 NA non-coding upstream 292834 14967207 ~ 14968539 (-)
G64964 NA non-coding upstream 526925 15201298 ~ 15201545 (-)
G65253 NA non-coding upstream 1231721 15906094 ~ 15960367 (-)
G65260 NA non-coding upstream 1250081 15924454 ~ 15925161 (-)
G64436 NA other downstream 405267 14232809 ~ 14243681 (-)
zgc:194312 LOC108267841 other downstream 1208428 13436056 ~ 13440520 (-)
acap1 acap1,LOC107731905,LOC107683535,LOC107595305,LOC107675497 other downstream 1340470 13285999 ~ 13308478 (-)
tmem256 tmem256,LOC107659713,LOC107564775,LOC107560291 other downstream 2159386 12484723 ~ 12489562 (-)
LOC113539775 NA other downstream 2371279 12272218 ~ 12277669 (-)
tbc1d19 tbc1d19,LOC107660707 other upstream 1205098 15879471 ~ 15904355 (-)
smim20 NA other upstream 1299206 15973579 ~ 15991985 (-)
acox3 acox3 other upstream 1380155 16054528 ~ 16071692 (-)
tnfsf12 tnfsf12 other upstream 1744791 16419164 ~ 16426624 (-)
leap2 LOC100304644 other upstream 1918189 16592562 ~ 16594505 (-)

Expression


Co-expression Network