myl12.1 (LOC108267514,LOC101069867,LOC108436131,LOC103377455,LOC101484951)


Basic Information

Item Value
gene id myl12.1
gene name LOC108267514,LOC101069867,LOC108436131,LOC103377455,LOC101484951
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 21488187 ~ 21492336 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936692.2
ATCTAGATATCCTGTCCGGAAGCATCCGTTGCGACTATCAGGAAGTTTGGGCGGTGGTTGCGCAGGCCGTCAGTTTGTTCGGTTTCAGGTAAAATCCCAACAGAGGCAACATGTCCAGCAAAAGTCGTGTGAAGGCAAAGACTGCCAGGAAGCGCCCTCAGCGTGCGACCTCCAATGTCTTTGCCATGTTCGATCAGTCACAGATCCAGGAGTTCAAAGAAGCCTTCAACATGATCGACCAGAACCGTGACGGCTTTGTGGACAAGGAAGATCTGCATGACATGCTGGCATCTCTGGGTAAGAACCCGACTGAAGCATATTTGGAGGCGATGATGAATGAAGCTCCTGGGCCCATTAACTTCACAATGTTCCTCACCATGTTTGGAGAGAAACTGAACGGCACTGATCCAGAAGACGTCATCCGCAACGCCTTTGCCTGCTTTGACGAGGAGGGAACCGGCTTTATCCAGGAAGACTATCTGCGGGAACTTCTGACCACAATGGGCGACcgcttcacagacgaggaggtCGATGAGCTCTTCAGGGAGGCCCCTATTGACAAGAAGAACAACTTTAACTATGTGGAGTTCACACGTATCCTCAAACACGGAGCCAAAGACAAGGATGACTAAATACAGAAACCTCCATGCATCATCAATCCTTCCTTTTTAATCTTCCTTCTCAGCTAAAGGAGCTTTACTTAATGTTTCTGGAAATATTCTGAGATAAATGCCAACCTCAAAAATCTGCCAGGctgctctgtttgtgtgtgatttatttaaaggTAAACTTTAAGGGGAAAATGTATCTAGATTATGACCAAATCACTGAACATGTTAggataatttttatttaatcaccCTTTTACTGAAGTTGTTTTGTATTGTCTAGTATTGGACACAGCACAGTTGTTTGTTTAGGGATGTGAGCGAGTTATTTGTTGTGGTTGGTTTAACAGCGGTTTACTTCAGACTCCCTTGAAACTATACATGTAATTAGTTAGGGTGTgtatatgaattattaattatgatATTTGATTGTGTTTAAGGCCCTTTTCTAAATGTCTGTCCCACTAAAGTGTACCTTCAAGTAAACTCAACAGACATTTAATTTAGATGCAGCAGAACTGCACATAACAGTCTTGGACTTCCTGGAGGTCCAGTTTCTCAGTGCTTTAAATGTGGTAAAATGTGAAGTGGTGGTGGGGTCTACAAGCAGGTTTGCTGTTATGTCCCGATCTAGctgaatttttacattttataataaatatgaactTTTTCAATAAATTACTTAAA

Function

NR:

description
PREDICTED: myosin regulatory light polypeptide 9

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K12757 MYL12; myosin regulatory light chain 12

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936692.2 True 1295 mRNA 0.42 4 21488187 21492336

Neighbor

gene id symbol gene type direction distance location
fastkd3 fastkd3 coding downstream 2374 21480615 ~ 21485813 (-)
LOC113540027 rgs20 coding downstream 57607 21427185 ~ 21430580 (-)
trnaa-ugc NA coding downstream 69948 21418168 ~ 21418239 (-)
mrpl15 mrpl15 coding downstream 70359 21413861 ~ 21417828 (-)
sox32 LOC108267240,LOC100698545 coding downstream 86919 21399555 ~ 21401268 (-)
emilin2b LOC108267875 coding upstream 62190 21554526 ~ 21580543 (-)
smchd1 smchd1 coding upstream 89886 21582222 ~ 21623632 (-)
adcyap1a LOC108268182 coding upstream 237859 21730195 ~ 21735758 (-)
tyms tyms coding upstream 256499 21748835 ~ 21757727 (-)
hacd1 hacd1,LOC107702201,LOC107571282,LOC107568855 coding upstream 285540 21777876 ~ 21785375 (-)
G68577 NA non-coding downstream 12411 21474587 ~ 21475776 (-)
G68520 NA non-coding downstream 15155 21472819 ~ 21473032 (-)
G68519 NA non-coding downstream 16348 21471632 ~ 21471839 (-)
G68495 NA non-coding downstream 79980 21407111 ~ 21408207 (-)
G68466 plag1 non-coding downstream 167041 21320818 ~ 21321146 (-)
G68585 NA non-coding upstream 4596 21496932 ~ 21501433 (-)
G68740 mrc1 non-coding upstream 335937 21828273 ~ 21828833 (-)
G68741 NA non-coding upstream 337740 21830076 ~ 21830642 (-)
G68743 NA non-coding upstream 342886 21835222 ~ 21835426 (-)
G68744 NA non-coding upstream 343434 21835770 ~ 21835995 (-)
LOC113539989 LOC108436138 other downstream 117177 21354619 ~ 21371010 (-)
G68462 NA other downstream 158937 21326046 ~ 21329250 (-)
chchd7 chchd7 other downstream 174290 21304692 ~ 21313897 (-)
znf16l LOC108268318 other downstream 662667 20778538 ~ 20825520 (-)
snrpf snrpf,LOC106609479,LOC107738052 other downstream 1522336 19962582 ~ 19965851 (-)
G68760 NA other upstream 442190 21934526 ~ 21935169 (-)
LOC113540019 LOC108268143 other upstream 1137279 22629615 ~ 22636088 (-)
lrrcc1 lrrcc1 other upstream 1799712 23292048 ~ 23306934 (-)
retreg1 fam134b other upstream 1838680 23331016 ~ 23346573 (-)
LOC117597073 LOC108267227,LOC108267226 other upstream 1987629 23479965 ~ 23483850 (-)

Expression


Co-expression Network