tsc22d2 (tsc22d2,LOC107709364,LOC103395840,LOC107559349)


Basic Information

Item Value
gene id tsc22d2
gene name tsc22d2,LOC107709364,LOC103395840,LOC107559349
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 28075616 ~ 28093937 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936704.2
GTAACGCCCGTAGATGCCTGTTGCGCTCTTTACCCAGCATGCACCGCGAATTTTTAGCCATCTTGTTGAgaggtggaattttttttttcttcagaaattTTGCTTCCCGAACTCTGTGAGCCCCGAATCACTTTTACTCACAGCGTCTTATCGTCTCGTTGGCGTCTTCACGAGCGAACTAGCGCGAGTCGCGATTTGAAAAATGAGATATTTGTAGTTGTGGTGTGAAAGCAAACCGTTTGcagaagtgtttattattattttttttttataagatgCTAAATGTGAGGCCGGGGGGAAGCGGGCCCCCAGCTCGCGCCTCGGATTAAAGTGGCAGCTCAAGCCCGGGAGAGGCGTTACCCAGCTCGGCCTAGTGTGCACCGCGGACCCGGGACGGAGGCCGGTTTAATccggttaaaaaaaacagtcagtatTAAAATCGAATCTggattttaaacaaattttaatgGCCATCTCTTGGTTTGAGCGATCGTTAGGAATGCAACAggacagaagaagaagaggaagagcgATGACGTATGATCATTTAGGTTAACAGCTTAAAAACTGATTTTGATCCAACGCCACTTTTTCCCTGAGTTGTCTCTTCTTTAGCTTGTAAACGGAGTGCGTTTATTTTTTTAGGCTCCGCGTGTTTAAGTAGGGCGTACATTTGTCTACACAAGTATCTTAACACTTCTAAGatgtcagccaagaagaagAGCTGCTTCCAGATCACCAGCGTGACCCAGGCTCAGGTGGCCACGGTTGGCTGCGCAGATGATGCCGAGAGCCTGGACGATCCGGACGAATCCCGGACCGAGGACGCGTCGTCGGAGATCTACGAACCGGAAGTGTGCGACCGGAGGAGTTCGGCATCGTACAGTGCGTTGAACAGCGTCGGAGAAGGCGAGGCGGCTGCTCACAGAACGGCTCACCCGGGACAGTCTCACCAGCCTGGAGGTCCTGGTGCAGTGGGTGGTCCTGGTCAGCAagccacctccaccaccaccagctGCAGCTCACGCTTCCGAGTGATTAAGCTCGACCATGGCACAGGAGAGCCTTTCCGCAGGGGCAGGTGGACATGCACAGAATTCTATGAGAAAGAACCCGAGGTGGCGACTGGTAGGACTGCAGAGGGGACCAGGCACGTCAACGAGCACGCCCCTGACCGGGATAGCGGATTAGGCGTCTCTGTAGTGGTTCAGTCCAGCCAGGCCTCGGAtgtcaccaccaccaccaccatgctcgATCTGTCAGCATCGCATACCTCTGTGCACCCTTTCGAATCCGGTAATGACCCCGGTAAAACGGCACAGCCGGCTGTTCCCCCTCAGGCTCTTCTCGCACCGGGCTTAAACCAAGGCTCTCACGTACAGATATCACCCGTTACTCCACAGGCTTATCAAAATCAACCGCAGCAAAATCCTCAATTATCCTTAGGCCTCCACATGCCAAGCCAAACTAGCATGTTGCCCGAGTACGGACAGCAGCACTTGCCCCACGCTGTCCCCATGCAAGGGGAAATCGGCATCTCCATACCAGCCAGCCAGTCGGGAGCTTCTGTTCCGACCCTAATGGACTGGGCGGGAGTGATGAGCGTGGCGGGGATGCCGCCTCTCGCCCCCGCAACTTCGGTTCAGATCGGACAGTATTCGGGTGTACCCATGACGGCTGGCCAAAATTCACCTGTTCCGAGTGCAGTAGGCATCCCAGTGCCCGAACAGAGTCGGAGGAAATCGGACGCGGCTGCCTCTGCCCCCCTCGTTGCCCCTGTTAAAGAGGCTGGGAAACCCTTGATTACGGAGGAGTTGCCCCTTATGCCCAACCCTGGGGTGAACAGCCTGTTTGGGATCTCCATCCCCATCGACGGGGACGAGGACAGTGCCTCTGGAGCGAGCGTCGTCGCCATCGATAATAAAATAGAGAAAGCAATGGATCTGGTGAAGAGCCACCTGATGTACGCCGTGCGCgaggaggtggaggtgttgAAGGAGCAGATTAAGGAGCTGTGCGAGAGGAACTCAGTGCTGGAGCGCGAGAACGCCGTGCTCAAATCTCTGGCCAACAGCGAGCAGCTGTCTCAGCTCTCGGCTCACACGGCCTCTACGTCATCACCGACGCCGGCCTCGAACCCGCCGCAGCCCAGCGTCTCCTCCGCTTAACCATCACACGCGTCCACGAGCACGTCGTCGCTCAGCACCAGCTTTAACCAGCAGCGCTTCAgtatacatgtgtgtttgtgcgcgtgtgtgtgtgagtacatatgagtgtgtgtgtggggaccaGAAACGATACAGAAGTGTTTTcgttctttcttttgt
>XM_026936705.2
CGTAACGCCCGTAGATGCCTGTTGCGCTCTTTACCCAGCATGCACCGCGAATTTTTAGCCATCTTGTTGAgaggtggaattttttttttcttcagaaattTTGCTTCCCGAACTCTGTGAGCCCCGAATCACTTTTACTCACAGCGTCTTATCGTCTCGTTGGCGTCTTCACGAGCGAACTAGCGCGAGTCGCGATTTGAAAAATGAGATATTTGTAGTTGTGGTGTGAAAGCAAACCGTTTGcagaagtgtttattattattttttttttataagatgCTAAATGTGAGGCCGGGGGGAAGCGGGCCCCCAGCTCGCGCCTCGGATTAAAGTGGCAGCTCAAGCCCGGGAGAGGCGTTACCCAGCTCGGCCTAGTGTGCACCGCGGACCCGGGACGGAGGCCGGTTTAATccggttaaaaaaaacagtcagtatTAAAATCGAATCTggattttaaacaaattttaatgGCCATCTCTTGGTTTGAGCGATCGTTAGGAATGCAACAggacagaagaagaagaggaagagcgATGACGTATGATCATTTAGGTTAACAGCTTAAAAACTGATTTTGATCCAACGCCACTTTTTCCCTGAGTTGTCTCTTCTTTAGCTTGTAAACGGAGTGCGTTTATTTTTTTAGGCTCCGCGTGTTTAAGTAGGGCGTACATTTGTCTACACAAGTATCTTAACACTTCTAAGatgtcagccaagaagaagAGCTGCTTCCAGATCACCAGCGTGACCCAGGCTCAGGTGGCCACGGTTGGCTGCGCAGATGATGCCGAGAGCCTGGACGATCCGGACGAATCCCGGACCGAGGACGCGTCGTCGGAGATCTACGAACCGGAAGTGTGCGACCGGAGGAGTTCGGCATCGTACAGTGCGTTGAACAGCGTCGGAGAAGGCGAGGCGGCTGCTCACAGAACGGCTCACCCGGGACAGTCTCACCAGCCTGGAGGTCCTGGTGCAGTGGGTGGTCCTGGTCAGCAagccacctccaccaccaccagctGCAGCTCACGCTTCCGAGTGATTAAGCTCGACCATGGCACAGGAGAGCCTTTCCGCAGGGGCAGGTGGACATGCACAGAATTCTATGAGAAAGAACCCGAGGTGGCGACTGGTAGGACTGCAGAGGGGACCAGGCACGTCAACGAGCACGCCCCTGACCGGGATAGCGGATTAGGCGTCTCTGTAGTGGTTCAGTCCAGCCAGGCCTCGGAtgtcaccaccaccaccaccatgctcgATCTGTCAGCATCGCATACCTCTGTGCACCCTTTCGAATCCGGTAATGACCCCGGTAAAACGGCACAGCCGGCTGTTCCCCCTCAGGCTCTTCTCGCACCGGGCTTAAACCAAGGCTCTCACGTACAGATATCACCCGTTACTCCACAGGCTTATCAAAATCAACCGCAGCAAAATCCTCAATTATCCTTAGGCCTCCACATGCCAAGCCAAACTAGCATGTTGCCCGAGTACGGACAGCAGCACTTGCCCCACGCTGTCCCCATGCAAGGGGAAATCGGCATCTCCATACCAGCCAGCCAGTCGGGAGCTTCTGTTCCGACCCTAATGGACTGGGCGGGAGTGATGAGCGTGGCGGGGATGCCGCCTCTCGCCCCCGCAACTTCGGTTCAGATCGGACAGTATTCGGGTGTACCCATGACGGCTGGCCAAAATTCACCTGTTCCGAGTGCAGTAGGCATCCCAGTGCCCGAACAGAGTCGGAGGAAATCGGACGCGGCTGCCTCTGCCCCCCTCGTTGCCCCTGTTAAAGAGGCTGGGAAACCCTTGATTACGGAGGAGTTGCCCCTTATGCCCAACCCTGGGGTGAACAGCCTGTTTGGGATCTCCATCCCCATCGACGGGGACGAGGACAGCTGCTGGTATCCGAGATATGTCAGGATTTCCCCACGCCCAAGAAAGCAGCCTTTTTCTGTATGACTTTCATGGACCAGGCACTGATTTGACGGATGATGGGCAAAACATCATAATCGGACTTcagtgaataaaataatcagtttcaATTACATACTTTGTTTTTGAATGCGTTTTATCGCCCTCTAGTGTGAACTTGTGGTTATTCGCTTCACTCT

Function

symbol description
tsc22d2 Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Is expressed in paraxial mesoderm; presumptive segmental plate; and somite. Orthologous to human TSC22D2 (TSC22 domain family member 2).

NR:

description
PREDICTED: TSC22 domain family protein 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936704.2 True 2327 mRNA 0.54 3 28075616 28093936
XM_026936705.2 False 2105 mRNA 0.53 2 28087411 28093937

Neighbor

gene id symbol gene type direction distance location
cpdp LOC108268310,LOC108430687,LOC105899208 coding downstream 11087 28056712 ~ 28064529 (-)
dpp6b LOC108267703,LOC108430761 coding downstream 236519 27704281 ~ 27839097 (-)
trnat-ugu_9 NA coding downstream 450808 27624736 ~ 27624808 (-)
trnat-ugu_7 NA coding downstream 454488 27621056 ~ 27621128 (-)
gpr158b LOC108268005 coding downstream 456425 27585574 ~ 27619191 (-)
ahsg2 LOC108267477 coding upstream 23155 28117092 ~ 28122103 (-)
LOC113540134 LOC108267236 coding upstream 30145 28124082 ~ 28140907 (-)
LOC113540126 NA coding upstream 63892 28157829 ~ 28170981 (-)
LOC113540124 NA coding upstream 79384 28173321 ~ 28196057 (-)
cdc73 cdc73 coding upstream 144959 28238896 ~ 28275315 (-)
G72651 LOC108267776 non-coding downstream 6339 28068492 ~ 28069277 (-)
G72652 NA non-coding downstream 7532 28067582 ~ 28068084 (-)
G72604 NA non-coding downstream 62812 28011684 ~ 28012804 (-)
LOC117597146 NA non-coding downstream 89760 27974470 ~ 27985856 (-)
G72517 NA non-coding downstream 104821 27569244 ~ 27970795 (-)
G72665 NA non-coding upstream 44929 28138866 ~ 28140438 (-)
G72709 NA non-coding upstream 249197 28343134 ~ 28383460 (-)
G72720 NA non-coding upstream 271720 28365657 ~ 28379132 (-)
G72726 NA non-coding upstream 303724 28397661 ~ 28471771 (-)
G72796 NA non-coding upstream 573386 28667323 ~ 28668643 (-)
prkag2b LOC108267467,LOC108430764,LOC108434244 other downstream 33831 28016064 ~ 28041785 (-)
pcyt1aa pcyt1a,LOC108267677,LOC108430756,LOC103040438,LOC107709348,LOC107671662,LOC107559373 other downstream 519629 27547752 ~ 27555987 (-)
tsen15 tsen15 other downstream 591783 27474765 ~ 27483833 (-)
LOC113540508 LOC108268039 other downstream 642938 27415267 ~ 27432678 (-)
trnat-ugu_4 NA other downstream 679393 27396151 ~ 27396223 (-)
LOC117597043 NA other upstream 104054 28197991 ~ 28225603 (-)
trnas-uga_1 NA other upstream 142249 28236186 ~ 28236267 (-)
trnas-uga_2 NA other upstream 142787 28236724 ~ 28236805 (-)
LOC113540437 fam159a other upstream 554387 28648324 ~ 28652425 (-)
LOC117597168 NA other upstream 693677 28787614 ~ 28791829 (-)

Expression


Co-expression Network