fam49ba (LOC108267758,LOC106592588,LOC107713994,LOC107718035,LOC107657432,LOC107556887)


Basic Information

Item Value
gene id fam49ba
gene name LOC108267758,LOC106592588,LOC107713994,LOC107718035,LOC107657432,LOC107556887
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23758384 ~ 23782113 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936706.2
TTCATTGAGGCGGGCTGTTTGCGGTGTTGAGCAGTGAGCGGAGTATGCTAATTTCCTGCACTTCCCCTCTCTAAATCAATGCCTTTTATAGGCAGGACTGCCTTTTAGAGTTGCGCCTGCCTTGTGTCACTCACCAACCTGTGCTTCTTACATAAAATATAGCCCAGAGCTGATCATCCAGCAACCCGGAACATGGAGGCGCAGCTCCTCTTCAGCATGAGCAGCTGAGTTCACACCGTCTGCACTTTTCTCAAGACGTTTGCTCAAAGTTGAAGGTTTCTGATTGGACGGCATGGGGAATCTGATCAAGGTTCTGACGAGGGACATCGACAACAATGCGGGGAACTTTTTCCTGGACTTTGAAAATGCTCAGCCCACTGAGGCAGAGAGGGAGTTATGGGAACAGGTGAACAAGGTTCTGATGGAGGCCATGAGTGTTTTAGAGGATCTGCAGTCCTACAGTGGAGCTGGAGAAGCCATTAGACAGGCCATCCAGCAGCCGTCTAATGAAAGTGTGCAAGAGAAAGCCTGGACTGCTGTGGTGCCGCTAGTGGGCAAACTAAAGAAGTTTTACGAGTTCTCTCTAAAGCTGGAAGGTGCCCTGCATGGCCTGCTGGGATTCCTAACGAGTGCACGCTGCAGCCCCACACAGCACTTGGAGCAGGAGCAGGCTCTGGCACGCCAATTCGCAGAGATCCTCCACTTCACTCTGCGCTTCGATGAGCTCAAGATGACTAATCCAGCCATTCAGAACGACTTCAGCTACTACCGCCGGACCCTGAGCCGCATGCGAATCAACAACTTGGCAacagaggaagagaacgAAGTAAACAACGAACTGGCCAATCGCATGTCTCTGTTCTATGCCAATGCTACACCAATGCTGAAAACATTAAGTGATGCCACAACGAAGTTTGTATCTGAGAATTCAGATTTACCCATagaaaacacaacagactgCCTAAGTACGATGgcaagtgtgtgtaaagtcaTGTTAGACACACCGGAGTACCGTAGCCGTTTTGCGAGTGACGACACAGTGTTATTCTGCCTCCGTGTGATGGTGGGAGTCATCATCCTCTACGACTACGTCCATCCTGCTGGAGCTTTTGTCAAGTCCTCAAaaattgatATGAAAGGATGCATTAAAGTCCTGCGGGATCAGCCACCTAACAGAGTAGAAGGTCTCCTTAATGCGCTCAGGTACACGACAAAACATTTGAATGATGAGACTACCTCCAAGCAAATCAAAAACATGTTACAAGTCTGACAGCATCCACAAAACGGTACTTTTTGGAACCTGATGAGGATTTCAGCGCTCTTCTGATGAGACTGCTTTAGTGGGAGTTTTTAAATACAGAGAAAATGGCCATGTGTCAGGTGGCAGCTATCAGGATACACTGCTGTATGATGTGCTTAATGCAACTCAGAAAAGGAGCTCCTCtgtcctttcttttttaaaaattgttttattgcccctgtgtatttttttttaatggttgaCAGAGTGCCAAGGCAGAAACAAATATCTGTTTATGTAATTTCATTGTTAAATGATGgttgttttgattgttttgataactctttttaacaaaataaagaagCTGTTTAAATCGGT

Function

NR:

description
PREDICTED: protein FAM49B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936706.2 True 1618 mRNA 0.46 11 23758384 23782113

Neighbor

gene id symbol gene type direction distance location
amph amph coding downstream 174888 23547170 ~ 23583496 (-)
LOC113540016 NA coding downstream 213652 23537428 ~ 23544732 (-)
LOC113540113 LOC108267226 coding downstream 253203 23466417 ~ 23505181 (-)
LOC113540011 NA coding downstream 294659 23446805 ~ 23463725 (-)
LOC117597115 NA coding downstream 315641 23430300 ~ 23442743 (-)
asap1a LOC108267580,LOC108437251 coding upstream 1985 23784098 ~ 23843304 (-)
ubtfl ubtfl,LOC108267581,LOC107718032 coding upstream 62931 23845044 ~ 23858386 (-)
slc4a2a slc4a2,LOC108413474 coding upstream 77759 23859872 ~ 23899907 (-)
ttc19 ttc19 coding upstream 125046 23907159 ~ 23919306 (-)
faim2a LOC108413298 coding upstream 142967 23925080 ~ 23935101 (-)
G69691 NA non-coding downstream 106518 23651051 ~ 23651866 (-)
G69649 NA non-coding downstream 163840 23594331 ~ 23594544 (-)
LOC113540115 NA non-coding downstream 304163 23453233 ~ 23454221 (-)
G69551 NA non-coding downstream 360421 23396664 ~ 23397963 (-)
G69503 NA non-coding downstream 479602 23278575 ~ 23278782 (-)
G69916 NA non-coding upstream 139993 23922106 ~ 23922538 (-)
LOC117597086 NA non-coding upstream 149220 23931333 ~ 23932235 (-)
G70025 NA non-coding upstream 356180 24138293 ~ 24138492 (-)
G70026 NA non-coding upstream 363465 24145578 ~ 24145784 (-)
G70027 NA non-coding upstream 363777 24145890 ~ 24146241 (-)
LOC117597117 NA other downstream 226368 23531238 ~ 23532016 (-)
LOC113540013 NA other downstream 240714 23516930 ~ 23517670 (-)
LOC113540114 LOC108267227 other downstream 242025 23515699 ~ 23516359 (-)
LOC117597116 NA other downstream 243449 23514374 ~ 23514935 (-)
LOC113540012 NA other downstream 244345 23513456 ~ 23514039 (-)
G70255 rnf220 other upstream 522261 24304374 ~ 24304926 (-)
ccdc24 ccdc24 other upstream 783628 24565741 ~ 24586048 (-)
ltb4r2b NA other upstream 2589808 26371921 ~ 26376408 (-)
G71596 NA other upstream 2689967 26472080 ~ 26551030 (-)
G71832 NA other upstream 3314489 27096602 ~ 27100858 (-)

Expression


Co-expression Network