Gene
RNA
| Item | Value |
|---|---|
| gene id | prkci |
| gene name | prkci,LOC107706387,LOC107668962,LOC107659412,LOC107738175,LOC107591345 |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047598.1 |
| NCBI id | CM018544.1 |
| chromosome length | 33267568 |
| location | 26917159 ~ 26933519 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| prkci | Predicted to enable phospholipid binding activity and protein serine/threonine kinase activity. Acts upstream of with a negative effect on apical protein localization. Acts upstream of or within several processes, including animal organ development; digestive tract development; and morphogenesis of an epithelium. Located in zonula adherens. Is intrinsic component of plasma membrane. Is expressed in several structures, including blastoderm; common cardinal vein; eye; posterior lateral line primordium; and pronephric duct. Orthologous to human PRKCI (protein kinase C iota). |
| description |
|---|
| protein kinase C iota type |
| id | name | namespace |
|---|---|---|
| GO:0001738 | morphogenesis of a polarized epithelium | biological_process |
| GO:0007502 | digestive tract mesoderm development | biological_process |
| GO:0035556 | intracellular signal transduction | biological_process |
| GO:0042476 | odontogenesis | biological_process |
| GO:0048546 | digestive tract morphogenesis | biological_process |
| GO:0035050 | embryonic heart tube development | biological_process |
| GO:0000132 | establishment of mitotic spindle orientation | biological_process |
| GO:0045199 | maintenance of epithelial cell apical/basal polarity | biological_process |
| GO:0001841 | neural tube formation | biological_process |
| GO:0045217 | cell-cell junction maintenance | biological_process |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0034334 | adherens junction maintenance | biological_process |
| GO:0007097 | nuclear migration | biological_process |
| GO:0007405 | neuroblast proliferation | biological_process |
| GO:0021744 | dorsal motor nucleus of vagus nerve development | biological_process |
| GO:0060042 | retina morphogenesis in camera-type eye | biological_process |
| GO:0008078 | mesodermal cell migration | biological_process |
| GO:0016332 | establishment or maintenance of polarity of embryonic epithelium | biological_process |
| GO:0031226 | intrinsic component of plasma membrane | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0005915 | zonula adherens | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005524 | ATP binding | molecular_function |
| GO:0005543 | phospholipid binding | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0004697 | protein kinase C activity | molecular_function |
| id | description |
|---|---|
| K06069 | PRKCI; atypical protein kinase C iota type |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_026936874.2 | True | 2657 | mRNA | 0.49 | 18 | 26917159 | 26933519 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| skila | LOC108267442 | coding | downstream | 3579 | 26903908 ~ 26913580 (-) |
| nadkb | nadkb,LOC108267451,LOC107591341,LOC107738176,LOC108444346,LOC107659414,LOC107557499 | coding | downstream | 27823 | 26881468 ~ 26889336 (-) |
| samd7 | LOC108267443 | coding | downstream | 72141 | 26835646 ~ 26845018 (-) |
| LOC117597119 | NA | coding | downstream | 81271 | 26835025 ~ 26835888 (-) |
| LOC113540659 | LOC108267452 | coding | downstream | 106909 | 26808656 ~ 26810250 (-) |
| LOC113540546 | NA | coding | upstream | 47670 | 26981189 ~ 26982209 (-) |
| tmem125b | LOC108267439 | coding | upstream | 171975 | 27105494 ~ 27108411 (-) |
| cfap57 | cfap57 | coding | upstream | 175293 | 27108812 ~ 27143851 (-) |
| LOC113540028 | NA | coding | upstream | 219980 | 27153499 ~ 27158015 (-) |
| LOC113540236 | LOC108267484 | coding | upstream | 304425 | 27237944 ~ 27261901 (-) |
| G71764 | NA | non-coding | downstream | 21595 | 26894681 ~ 26895564 (-) |
| G71734 | NA | non-coding | downstream | 57704 | 26847346 ~ 26859455 (-) |
| G71732 | LOC108267445,LOC107591334,LOC107684401 | non-coding | downstream | 60487 | 26853267 ~ 26856672 (-) |
| G71707 | NA | non-coding | downstream | 220062 | 26696893 ~ 26697097 (-) |
| G71705 | NA | non-coding | downstream | 220838 | 26694946 ~ 26696321 (-) |
| G71765 | NA | non-coding | upstream | 1471 | 26934990 ~ 26935197 (-) |
| G71815 | NA | non-coding | upstream | 97798 | 27031317 ~ 27036462 (-) |
| G71854 | NA | non-coding | upstream | 209587 | 27143106 ~ 27151314 (-) |
| G71892 | NA | non-coding | upstream | 240533 | 27174052 ~ 27174536 (-) |
| G71896 | NA | non-coding | upstream | 246415 | 27179934 ~ 27180140 (-) |
| G71596 | NA | other | downstream | 366129 | 26472080 ~ 26551030 (-) |
| ltb4r2b | NA | other | downstream | 540751 | 26371921 ~ 26376408 (-) |
| ccdc24 | ccdc24 | other | downstream | 2331111 | 24565741 ~ 24586048 (-) |
| G70255 | rnf220 | other | downstream | 2612233 | 24304374 ~ 24304926 (-) |
| LOC117597117 | NA | other | downstream | 3385143 | 23531238 ~ 23532016 (-) |
| G71832 | NA | other | upstream | 163083 | 27096602 ~ 27100858 (-) |
| G71909 | LOC108267490 | other | upstream | 270264 | 27203783 ~ 27204186 (-) |
| trnat-ugu_3 | NA | other | upstream | 461838 | 27395357 ~ 27395429 (-) |
| trnat-ugu_4 | NA | other | upstream | 462632 | 27396151 ~ 27396223 (-) |
| LOC113540508 | LOC108268039 | other | upstream | 481748 | 27415267 ~ 27432678 (-) |
