rgs5b (LOC108267191)


Basic Information

Item Value
gene id rgs5b
gene name LOC108267191
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 29833662 ~ 29835191 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936933.2
TCCAAACTCTcgcaacaacacacacattagccaAGCGTACAGCACACAGCTGGGAATCATACATTCAGAGAAAAAATGTGCCAAGGATTGGAATCACTGCCAGTTACCTGTCTGGAGAGAGTCAAAGAGCTGAAGGCACGCTTGGGAAGTTTCCTCCTGAAGCAGGAGCTCAATCTCATGGGTCTGTCCAACAAAACCGATAAGCTGAAGACGGAGGACGCGCTCAAGTGGAGAACGTCCTTTCAGAATCTCCTGGCTCACAAAGATGGGTTATGCGCCTTCCGAGCGTTCCTGCTGTCCGagcacagtgaggaaaacaTTGCGTTCTACCTCGCCTGTGAGGACTACAAGAACACAAAGACGTCCTCCAAGCTGTGCTCCAAAGCCAAGAAAATCTATGAGGAGTTCATTGATGCCGAAGCGCCAAGAGAGGTGAATCTCGATCATGAGACGAAAAGCATCACGAAGAAGAACATGGAGCAGCCGACTGTGTCGTGCTTCGATCTGGCCCAGAGCAAAATCTACACTCTTATGGAGAAAGACTGCTACCCTCGGTTTCTCAAATCTGCGCTCTACATGGAGCTCAGCAGACAAGTGATGCCCTGAACTTGTCTCCAATGACTCGACAAGCTTGAAGCAGGACTTCAAACGCACGCGCTTGAACTGAACAGCGTCTCAAGCTCATGGCTGAGGTGGACTTGAGGTCATCGGTCAGGAACTGCCAGATACCAGCCTGGAACCCGTCAGGAACTGGTGAGGAACTAGGTGTTGAAGGATATCAAAAGAAAACTCAGGAGGTCAACAATCATGATGCTGAACTTggggaagaagaaggagaagaaaaagaagaagaagaagaagcactGGAATTAAACTGTGAGCGCACTTTTGCACAAATCAAGTAGTGAAAAAGCATTTTACTGTTCTCCTCTGAATAACTgatatttattgaaaaaaaagattttctataaattatatagcttttatttattaaactgtatGACGATGTATGTGTGGAATTTTGTTGGAATAAATTATGAAAT

Function

NR:

description
PREDICTED: regulator of G-protein signaling 5

GO:

id name namespace
GO:0043547 positive regulation of GTPase activity biological_process
GO:0038032 termination of G protein-coupled receptor signaling pathway biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG:

id description
K16449 RGS; regulator of G-protein signaling

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936933.2 True 1043 mRNA 0.45 4 29833662 29835191

Neighbor

gene id symbol gene type direction distance location
nos1apb LOC108267139 coding downstream 8521 29813527 ~ 29825141 (-)
ddr2b LOC108267138 coding downstream 21105 29797070 ~ 29812557 (-)
xpr1b xpr1,LOC108267842,LOC107681714,LOC107593799,LOC107715512,LOC107722139,LOC105029208 coding downstream 39520 29766208 ~ 29794142 (-)
cdc14aa LOC108267888,LOC108411489 coding downstream 85549 29732265 ~ 29748113 (-)
si:ch211-13f8.1 LOC108267891 coding downstream 127980 29693378 ~ 29705682 (-)
brinp3b LOC108267163 coding upstream 33400 29868591 ~ 29899526 (-)
LOC113540096 coa1,LOC108267121,LOC107600219,LOC108428892,LOC103038044 coding upstream 68553 29903744 ~ 30014565 (-)
wdr48b wdr48,LOC108428893,LOC108268031,LOC103039099 coding upstream 189878 30025069 ~ 30037066 (-)
LOC113540054 NA coding upstream 202217 30037408 ~ 30043011 (-)
odf3l2a LOC108267126,LOC108428861,LOC103039917 coding upstream 215369 30050560 ~ 30056720 (-)
G73485 NA non-coding downstream 40018 29792212 ~ 29793644 (-)
G73481 NA non-coding downstream 53530 29778555 ~ 29780132 (-)
G73444 NA non-coding downstream 67547 29765747 ~ 29766115 (-)
G73448 NA non-coding downstream 68030 29765124 ~ 29765632 (-)
G73479 NA non-coding downstream 69871 29763505 ~ 29763791 (-)
G73492 NA non-coding upstream 11483 29846674 ~ 29846891 (-)
G73607 NA non-coding upstream 94073 29929264 ~ 29929489 (-)
G73618 NA non-coding upstream 141480 29976671 ~ 30025036 (-)
G73652 NA non-coding upstream 260599 30095790 ~ 30097973 (-)
G73656 LOC108268010,LOC108428896,LOC107602621,LOC107678690,LOC107690048,LOC107721712,LOC107588875,LOC107749088 non-coding upstream 266249 30101440 ~ 30102870 (-)
zgc:110366 LOC108267892,LOC108437513 other downstream 102805 29724588 ~ 29730857 (-)
LOC113540665 LOC108267691,LOC108437516,LOC107715522,LOC107681815,LOC105889505 other downstream 257935 29564221 ~ 29575727 (-)
usp33 usp33,LOC106569751,LOC107708728,LOC107751869 other downstream 661741 29148638 ~ 29171921 (-)
LOC117597037 dnajb4,LOC107566472,LOC107681825,LOC107599850,LOC107690981,LOC107751861,LOC108430719 other downstream 948697 28873578 ~ 28884965 (-)
LOC117597168 NA other downstream 1041833 28787614 ~ 28791829 (-)
G73619 blvra other upstream 184315 30019506 ~ 30022525 (-)
LOC113540055 LOC108268301 other upstream 906336 30741527 ~ 30750968 (-)
ccl20l LOC100304631 other upstream 938258 30773449 ~ 30775819 (-)
rem2 rem2,LOC108268350,LOC108442842,LOC107706340,LOC107567555,LOC107694663,LOC107583115,LOC107738122 other upstream 1411869 31247060 ~ 31277249 (-)
LOC117597010 NA other upstream 2035327 31870518 ~ 31871874 (-)

Expression


Co-expression Network