skila (LOC108267442)


Basic Information

Item Value
gene id skila
gene name LOC108267442
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 26903908 ~ 26913580 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936961.2
ATCAAGTGACGTTTTCATGTCTCGCGCTGTCGAGAGAAACCCAgacagagtgatagagagagagagagagagagagggagaaagagggagacacagaagagagagagagagagagaaagagggagacacagaagagagagagagggagggagagagacacagacacacacacagacagacagacagacagacagagggagagacggAAGTGGAATGCTGTCCCCATGCCAGTCCTGAGGCCGGAGCGTCTTTCATAGTGAGACAAGCCAACAGGAAGACTGCGGAGGTGTGAGACAGGTGTAGGCAGACAGGtcacagtgtgtgagacagcatGGCGAGCATGATGGTGCCGGTTAGAAACGTGAGCACTCTGCAGTGTGGGGTGAAGCGTGTGTGCAGGGACAGACCAGAGGATGCGCCCATAAAGAAGCGCGTGATGGCGGAGATGAAGCTGACGCGCAGAGTGAAGCGGGAGGACTCGGAGTGTGATAAAGCCTTGGACCTGAGTCCGggtctcaaacacacactggctcAGTTCACACTGAGCAGCCGGAGCTCGCTCGGTGGACCGGCCGCTTTCTCCGCGCGCACTGATGTCAGCTCGCCACAGACCATGGCCCCGCCCCTTCCTTCACCCTCCATCCTGGGGGCAGGGCCTCTGTTGGTGCCGAGCGACAGGTCGACGGAGCTGACGCACGCAGTGCTGGAGGGCGAGTCGATCTGCAGCTTTGTTGTGGGAGGAGAGAAGCGTCTGTGTCTGCCGCAGGTTTTGAACTCGGTGCTGCGAGACTTCACGCTGCAGCAGATTAACGTTGTGTGTGACGAGCTGTATGTGTACTGCGCCCGCTGTGACGCCGACCAGCTGCACGTGCTCAAAGTGTTGGGCATCCTGCCCTTCAACGCCCCGTCCTGCGGCCTCATCACACTGACTGACGCGCAGAGGCTGTGCAATGCGCTGCTCCGACCTGGCTCCACCCAAAACCACCCCCAGCCCGGGGTGAAAGGCTCAGCTGTTAACGGACAGTTCGGCTTCCAGGTGGAGCACCAGTGCCTGGGGAAGTGCCGCGGTGTGTTCGTGCCGCAGTTCTACGTGCGTCCGGACGCACCGTGCgtgcagtgtgtggagtgcCAGCTGCTGTTCTCGCCTCAGAACTTCGTCATGCACTCGCACCGCACACCTGACAAGCGCACCTGCCACTGGGGCTTCGACTCCGCCCGCTGGCCGCGCTACCTGCACCTGAGCCGCCGCTACGAGGGCACTGCCGAGGAGACCAAACTCAGCACTGTGCTCGACCAGATGAAGAAGAAATTTCACCTGCAATCAGACACACCCCTGGACCAGgTTGTGGATGAGGACATCTGTGTGAGGAAGTCCAGTCCTTCCACTGATCAGGTGTGTGACACAAAGAgaaagggttcTCTGGCCTTCACTCGTCTGTGCCCTGACATCAAACAGGAAGTCGGACCGCCTGACATCATCCATCCCAGCTACTACCTGTACCCATATGATAAGATGGTGGCACCCAACGTGTCTCTGCAGAAGAATAGTGACAGTGACGGAGCAGACACACTAGGAACCCTGCTGAAACACCACTACAGCAGGAGAACACAcgATGTCCATGCGGCCACTCCGTCCATTGTCGAGGAACCGAAATTTCGCCACGGCGATGAAACGCGTCCACTCCCTTCGGCTGTCTCCATGGAAACAGACGGGAAGGAAGAAGACGATAAGGAGCAGCTGGTGTTTGAGATGGTTCACATGTACAACAGACAGCAGGAGAAGCTGAACGCTACGCTGCACACGCAGAGAGAGCTTGAGACGgagctacaggcagtgtgtgatggtgaggcGGAGCAGTGGAGGCGCTTGTCGGTGGAGCACAGTGAGCTGCAGAGCGAGTTGGAGGCGGTGCACACTGAGCATGCTCAGAAACTGGGAAGGGTTCAGCAGGAGCAGAGGGAGTTGGAGCAGAGACTGGAACAGCTccgacacacatacacacactgcacctgccAGAGCCAGGAGGAGCAGTACACCtcccagctGTGTGATCTGAGAGTGAGACTGGAGCgggcagaggcagagagacaggagctGCAGGATgagctgaggagagagagagatgcccgGGAGAAACTGGAACTGCTCATCAGTCAGCTACAGCAGCAGATCACcagctcagccaatcacagccctCGGAGCATCTACTCAACCAATCACAGCCCTCAGACCACTGACTCAAACAATCACAGCCCTAAAAACCtcacaccagccaatcacagtcCTCGgagccagcacacacactcacctgcaaCCAAACACAGCGGAGCCGAGTCGTCTTGAACACACACTTTATGTTTAAGGACTGTTTTATAAttcaacttattattattattattagtagtattattaatattttgtcattgttgaggcttactctgatgttagggtgtgagtgtgttttccCCTGCTGGacacagcaatcacacacacacacacacacacacacacacatatatgatGCAGCTGTGACTTGTGAGtattaacatttacacacacatataactgATGATGAGGTACAGCTTCACACTGTTCCCATAATTAGCAAACCAGAATTTAATTAACACACTATTAGTAATCAGTTAAAGTAATAACaccttaatttattaattagttgTTGAAACAGTGAACCCTGTTTATTGATGTTTATCAATCCATGATTAGAAATAACCCATGAATCACTAAAGtcttatattaattaattttaattaattaattaaacattaatatgttAATGACTAAACTTTAATATTCAAAAGAATAAGAGCcatgagctcattaatatttattaacacgCTGTAGTTAACACGTAGTTAACATGTAGTTAGTTACGGATGGAATAAATTAGATATTAATGATTGCGGGTGTGTTTAGTAAGCGTTTACACATTCACCTGCTGCATTAACTTCGTTTGACTGACAGTGTGTTAATGCTGATTCTAAGAATTACAGTCCCtgacacgcacgcacacagagACAACAATGACAAGACAAAAGTAATAAGCTGTCACAAATTACACAGTTGTACACTTCTGTACTACTctagagtgtaaaaaaaaaagatgaagtgtgtatTGATGTAGACATGTTACACTAATGTTCCCATTATGCACCACGACAtagaaggggcggggcttgtaACAGATAAAGGACTACTGATGATGGTAGTGATGGAAGATCTTCATACGCGcatctttctccatctctcattagcagtgacacacacacgtagCTGTTAGCAAGCATTGCTGGTggtgttagcatgctaatatCCTCTAATAATGAACACTGTAGCTAAATCTACATAGCATGAGTGAAGGAGGACGTCATGATGGGATCATTTCACATGATTacagcttaataataataataataataatagttatttattactactgttattatttctaataaTCTCACTTCATTTATATCACATCAGTTATGGCCACACCATATTGTCATCACGTGCTTTCACTGacacgtgtgtgtctgtgtgtatgaacACTCCTGtcttaattttattcatatttaaacatttctgccgtttttgtggggttttttttccagattgaACAGATTTTTACTGACGTGGTGTAAATGTCATTTTGTACACGAGGTGGCGCTGTGTGTCAGAGAAACTGAGTGTGATTTCACATTTCTTacgttttattttctcttttgtgcTGAATGATGAACTTGTACAGAGCCTGGTGTAATTAGCCGAGTGCTGCACGCTAACCGGAACAGGCTTAAAGATTTATACAGAAAGTACACCGGGGATAAACGTTAAGCTGTCTCACTGCGTCACGCCGACTGACCGTTGAGCGATTTTAGAAATCACCTCAGAGATGATTTAGAGGTTTGTCCTGCACAGGGGTGGAGCGACACCTCACCCTGATGATACATCATGATGATCTGGAATAGTGATATCGTTACACTTACTATATATCGGTATCGATAATGGCATCGAATGAGTCGGAATAGTGCACTAGTTATGGGCTGTGTTTCAAACCACACTCTGAATAACAGCTGGGACGATATATCAGTGTGACGATATACTTccataatatacattttattttggtgTTAGTTTGGTACCATTCGTATTGTATAACCTGTGATGTAGTGATCGTTGTACCGTATCGCTCCACCCCTCAGCAGTGAGACAGAGTTGGGGGGGTTTGATTTCAGTCctgcatgaaaatgaaaattaaactaAGATGCTGCACTCCTACCTCATGTTGacaaatagaaatatattaaaaaaaaagaaacattttatacaAGATGgggaaatatttacagattacaaacatgtatagtgtgtgtgtgtgtgtgtatacaccttTGATGTAAATACGGCGTGTACAGATGATGAgcttgaattaaattaaacttcTCTAGAA
>XM_026936963.2
ATCAAGTGACGTTTTCATGTCTCGCGCTGTCGAGAGAAACCCAgacagagtgatagagagagagagagagagagagggagaaagagggagacacagaagagagagagagagagagaaagagggagacacagaagagagagagagggagggagagagacacagacacacacacagacagacagacagacagacagagggagagacggAAGTGGAATGCTGTCCCCATGCCAGTCCTGAGGCCGGAGCGTCTTTCATAGTGAGACAAGCCAACAGGAAGACTGCGGAGGTGTGAGACAGGTGTAGGCAGACAGGtcacagtgtgtgagacagcatGGCGAGCATGATGGTGCCGGTTAGAAACGTGAGCACTCTGCAGTGTGGGGTGAAGCGTGTGTGCAGGGACAGACCAGAGGATGCGCCCATAAAGAAGCGCGTGATGGCGGAGATGAAGCTGACGCGCAGAGTGAAGCGGGAGGACTCGGAGTGTGATAAAGCCTTGGACCTGAGTCCGggtctcaaacacacactggctcAGTTCACACTGAGCAGCCGGAGCTCGCTCGGTGGACCGGCCGCTTTCTCCGCGCGCACTGATGTCAGCTCGCCACAGACCATGGCCCCGCCCCTTCCTTCACCCTCCATCCTGGGGGCAGGGCCTCTGTTGGTGCCGAGCGACAGGTCGACGGAGCTGACGCACGCAGTGCTGGAGGGCGAGTCGATCTGCAGCTTTGTTGTGGGAGGAGAGAAGCGTCTGTGTCTGCCGCAGGTTTTGAACTCGGTGCTGCGAGACTTCACGCTGCAGCAGATTAACGTTGTGTGTGACGAGCTGTATGTGTACTGCGCCCGCTGTGACGCCGACCAGCTGCACGTGCTCAAAGTGTTGGGCATCCTGCCCTTCAACGCCCCGTCCTGCGGCCTCATCACACTGACTGACGCGCAGAGGCTGTGCAATGCGCTGCTCCGACCTGGCTCCACCCAAAACCACCCCCAGCCCGGGGTGAAAGGCTCAGCTGTTAACGGACAGTTCGGCTTCCAGGTGGAGCACCAGTGCCTGGGGAAGTGCCGCGGTGTGTTCGTGCCGCAGTTCTACGTGCGTCCGGACGCACCGTGCgtgcagtgtgtggagtgcCAGCTGCTGTTCTCGCCTCAGAACTTCGTCATGCACTCGCACCGCACACCTGACAAGCGCACCTGCCACTGGGGCTTCGACTCCGCCCGCTGGCCGCGCTACCTGCACCTGAGCCGCCGCTACGAGGGCACTGCCGAGGAGACCAAACTCAGCACTGTGCTCGACCAGATGAAGAAGAAATTTCACCTGCAATCAGACACACCCCTGGACCAGgTTGTGGATGAGGACATCTGTGTGAGGAAGTCCAGTCCTTCCACTGATCAGggttcTCTGGCCTTCACTCGTCTGTGCCCTGACATCAAACAGGAAGTCGGACCGCCTGACATCATCCATCCCAGCTACTACCTGTACCCATATGATAAGATGGTGGCACCCAACGTGTCTCTGCAGAAGAATAGTGACAGTGACGGAGCAGACACACTAGGAACCCTGCTGAAACACCACTACAGCAGGAGAACACAcgATGTCCATGCGGCCACTCCGTCCATTGTCGAGGAACCGAAATTTCGCCACGGCGATGAAACGCGTCCACTCCCTTCGGCTGTCTCCATGGAAACAGACGGGAAGGAAGAAGACGATAAGGAGCAGCTGGTGTTTGAGATGGTTCACATGTACAACAGACAGCAGGAGAAGCTGAACGCTACGCTGCACACGCAGAGAGAGCTTGAGACGgagctacaggcagtgtgtgatggtgaggcGGAGCAGTGGAGGCGCTTGTCGGTGGAGCACAGTGAGCTGCAGAGCGAGTTGGAGGCGGTGCACACTGAGCATGCTCAGAAACTGGGAAGGGTTCAGCAGGAGCAGAGGGAGTTGGAGCAGAGACTGGAACAGCTccgacacacatacacacactgcacctgccAGAGCCAGGAGGAGCAGTACACCtcccagctGTGTGATCTGAGAGTGAGACTGGAGCgggcagaggcagagagacaggagctGCAGGATgagctgaggagagagagagatgcccgGGAGAAACTGGAACTGCTCATCAGTCAGCTACAGCAGCAGATCACcagctcagccaatcacagccctCGGAGCATCTACTCAACCAATCACAGCCCTCAGACCACTGACTCAAACAATCACAGCCCTAAAAACCtcacaccagccaatcacagtcCTCGgagccagcacacacactcacctgcaaCCAAACACAGCGGAGCCGAGTCGTCTTGAACACACACTTTATGTTTAAGGACTGTTTTATAAttcaacttattattattattattagtagtattattaatattttgtcattgttgaggcttactctgatgttagggtgtgagtgtgttttccCCTGCTGGacacagcaatcacacacacacacacacacacacacacacatatatgatGCAGCTGTGACTTGTGAGtattaacatttacacacacatataactgATGATGAGGTACAGCTTCACACTGTTCCCATAATTAGCAAACCAGAATTTAATTAACACACTATTAGTAATCAGTTAAAGTAATAACaccttaatttattaattagttgTTGAAACAGTGAACCCTGTTTATTGATGTTTATCAATCCATGATTAGAAATAACCCATGAATCACTAAAGtcttatattaattaattttaattaattaattaaacattaatatgttAATGACTAAACTTTAATATTCAAAAGAATAAGAGCcatgagctcattaatatttattaacacgCTGTAGTTAACACGTAGTTAACATGTAGTTAGTTACGGATGGAATAAATTAGATATTAATGATTGCGGGTGTGTTTAGTAAGCGTTTACACATTCACCTGCTGCATTAACTTCGTTTGACTGACAGTGTGTTAATGCTGATTCTAAGAATTACAGTCCCtgacacgcacgcacacagagACAACAATGACAAGACAAAAGTAATAAGCTGTCACAAATTACACAGTTGTACACTTCTGTACTACTctagagtgtaaaaaaaaaagatgaagtgtgtatTGATGTAGACATGTTACACTAATGTTCCCATTATGCACCACGACAtagaaggggcggggcttgtaACAGATAAAGGACTACTGATGATGGTAGTGATGGAAGATCTTCATACGCGcatctttctccatctctcattagcagtgacacacacacgtagCTGTTAGCAAGCATTGCTGGTggtgttagcatgctaatatCCTCTAATAATGAACACTGTAGCTAAATCTACATAGCATGAGTGAAGGAGGACGTCATGATGGGATCATTTCACATGATTacagcttaataataataataataataatagttatttattactactgttattatttctaataaTCTCACTTCATTTATATCACATCAGTTATGGCCACACCATATTGTCATCACGTGCTTTCACTGacacgtgtgtgtctgtgtgtatgaacACTCCTGtcttaattttattcatatttaaacatttctgccgtttttgtggggttttttttccagattgaACAGATTTTTACTGACGTGGTGTAAATGTCATTTTGTACACGAGGTGGCGCTGTGTGTCAGAGAAACTGAGTGTGATTTCACATTTCTTacgttttattttctcttttgtgcTGAATGATGAACTTGTACAGAGCCTGGTGTAATTAGCCGAGTGCTGCACGCTAACCGGAACAGGCTTAAAGATTTATACAGAAAGTACACCGGGGATAAACGTTAAGCTGTCTCACTGCGTCACGCCGACTGACCGTTGAGCGATTTTAGAAATCACCTCAGAGATGATTTAGAGGTTTGTCCTGCACAGGGGTGGAGCGACACCTCACCCTGATGATACATCATGATGATCTGGAATAGTGATATCGTTACACTTACTATATATCGGTATCGATAATGGCATCGAATGAGTCGGAATAGTGCACTAGTTATGGGCTGTGTTTCAAACCACACTCTGAATAACAGCTGGGACGATATATCAGTGTGACGATATACTTccataatatacattttattttggtgTTAGTTTGGTACCATTCGTATTGTATAACCTGTGATGTAGTGATCGTTGTACCGTATCGCTCCACCCCTCAGCAGTGAGACAGAGTTGGGGGGGTTTGATTTCAGTCctgcatgaaaatgaaaattaaactaAGATGCTGCACTCCTACCTCATGTTGacaaatagaaatatattaaaaaaaaagaaacattttatacaAGATGgggaaatatttacagattacaaacatgtatagtgtgtgtgtgtgtgtgtatacaccttTGATGTAAATACGGCGTGTACAGATGATGAgcttgaattaaattaaacttcTCTAGAA

Function

NR:

description
PREDICTED: ski-like protein

GO: NA

KEGG:

id description
K18499 SKIL; Ski-like protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936961.2 True 4466 mRNA 0.47 9 26903908 26913580
XM_026936963.2 False 4445 mRNA 0.47 9 26903908 26913580

Neighbor

gene id symbol gene type direction distance location
nadkb nadkb,LOC108267451,LOC107591341,LOC107738176,LOC108444346,LOC107659414,LOC107557499 coding downstream 14572 26881468 ~ 26889336 (-)
samd7 LOC108267443 coding downstream 58890 26835646 ~ 26845018 (-)
LOC117597119 NA coding downstream 68020 26835025 ~ 26835888 (-)
LOC113540659 LOC108267452 coding downstream 93658 26808656 ~ 26810250 (-)
map1sb LOC108267453 coding downstream 98541 26792023 ~ 26805367 (-)
prkci prkci,LOC107706387,LOC107668962,LOC107659412,LOC107738175,LOC107591345 coding upstream 3579 26917159 ~ 26933519 (-)
LOC113540546 NA coding upstream 67609 26981189 ~ 26982209 (-)
tmem125b LOC108267439 coding upstream 191914 27105494 ~ 27108411 (-)
cfap57 cfap57 coding upstream 195232 27108812 ~ 27143851 (-)
LOC113540028 NA coding upstream 239919 27153499 ~ 27158015 (-)
G71764 NA non-coding downstream 8344 26894681 ~ 26895564 (-)
G71734 NA non-coding downstream 44453 26847346 ~ 26859455 (-)
G71732 LOC108267445,LOC107591334,LOC107684401 non-coding downstream 47236 26853267 ~ 26856672 (-)
G71707 NA non-coding downstream 206811 26696893 ~ 26697097 (-)
G71705 NA non-coding downstream 207587 26694946 ~ 26696321 (-)
G71765 NA non-coding upstream 21410 26934990 ~ 26935197 (-)
G71815 NA non-coding upstream 117737 27031317 ~ 27036462 (-)
G71854 NA non-coding upstream 229526 27143106 ~ 27151314 (-)
G71892 NA non-coding upstream 260472 27174052 ~ 27174536 (-)
G71896 NA non-coding upstream 266354 27179934 ~ 27180140 (-)
G71596 NA other downstream 352878 26472080 ~ 26551030 (-)
ltb4r2b NA other downstream 527500 26371921 ~ 26376408 (-)
ccdc24 ccdc24 other downstream 2317860 24565741 ~ 24586048 (-)
G70255 rnf220 other downstream 2598982 24304374 ~ 24304926 (-)
LOC117597117 NA other downstream 3371892 23531238 ~ 23532016 (-)
G71832 NA other upstream 183022 27096602 ~ 27100858 (-)
G71909 LOC108267490 other upstream 290203 27203783 ~ 27204186 (-)
trnat-ugu_3 NA other upstream 481777 27395357 ~ 27395429 (-)
trnat-ugu_4 NA other upstream 482571 27396151 ~ 27396223 (-)
LOC113540508 LOC108268039 other upstream 501687 27415267 ~ 27432678 (-)

Expression


Co-expression Network