mrc1b (LOC108268341)


Basic Information

Item Value
gene id mrc1b
gene name LOC108268341
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047598.1
NCBI id CM018544.1
chromosome length 33267568
location 23150126 ~ 23174379 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026936974.2
AGCGAACATGATGAGACCGAGACTCCTGAAGCAAGCCTCCATCAACCATAAACATCATTGCTCACGGCATGGATAAATGTAATACTGAATGTTTATCAGAAAAACGGACACCAGTGCCAAAGTGACATTGTGAGACTTGGACCAAAGGCAGGTTTGACACAGGATTTGGCTTGTGTAAGGCTGAAAAAGATGATGAAAAGCAAGAAGATGAAAATAGCTGCTGTTATTGTGCTCCTGGTTAAGATATCGCACTGCTTTGCTTATCCAGatGGAAATTTTTTGATCTACAATGCACATAAGAACAGATGCCTGACGGACAGCCTACAATGGTTAGGAGTGTGTGACCCTCTCAGCGCAAAACAGCAGTTTCGCTGGACTTCTGAGGACCGAATCTTTAATGTTGCCCTGAAGAAATGCCTTGGCATAGGGAGCAGGAAGGAGGGCAATAAACTGCAGTGGTATATCTGTAATGCTAGAAATGACCTCCAAAAGTGGGAATGCAAAAACAATTCACAGTTTAGCCTGAAGAATGAGTCGCTGTACTTGTCCCTTCAGGGAGAATCTTATTCTCTAACACTGTCCAAAAAGCAGGAAGTCAAGAGCCAATGGACAATACATGGAACAACGGACAGCATCTGCTCTCGACCATATCAAGAATTATATACACTTAAAGGAAATGGCTTTGGTCGTCCATGTAATTTTCCATTCAGGTACAAAAATAAATGGTATGCAGGCTGCACAAAGGACGACTCCTCTAAACGCGAGTGGTGTGCAACTGAAAGTATATATGAAGATAATGAGCTCTGGGGTTATTGCCCGACAAGTCAAATAGatGACTTCTGGACCAAGAACCCTCTCACAGGCATTTATTACCAGATAAACAAAGATTCTGCACTTACCTGGTATCAGGCCAGAAAAAGCTGCCAGCAGCAGGGGGGAGACCTGTTGAGCATCACTGAGGCCCACGAGCAAGCTTTCATATCAGGTTTGACTCAGGGGAATGGCCCAGTATTGTGGACAGGTTTAAACAGTTTAGATGCCTCAAGTGGATGGCACTGGATCAATGGGCAACCTTTACGTTATTTAAACTGGCTCAGTGGGCAACCATCTTCTCAACCAGGTCGTAGCTGTGGAGCGATAAATCAGCAACATGATTCCAAATGGTCCACCGATATTTGTTCTGCGAAACGTGGATATATCTGCCAAAAAGTTCTCTACACTCCCACTATTCCACCAGTGGTGCACACAGGTTCTTGCCCCAGACCATGGATACCTTACTCAGGTCACTGCTACTATCTTAATCGCGCCAAAAAAACATGGCTGGAGGCAAAAGATGCCTGTCGGCGTGATGGTGGAGACCTGCTGAGCATTCTCAGTATAGAAGAACAAAGCTTTGCCATCTCACAACTTGGATACTTAAAGACGGATGAGTTGTGGATTGGCTTTAATGACCTCAAGACTGCAATGTTTTTTGAATGGACTGACCACTCCAGTGTCCCATTTGTCTCATGGGCGATGAATGAGCCAAGCCACAATGCTGACAATAAAGAAGACTGCGTTTTAATAAGAGGAGAGGAGGGCAAGTGGGCTGATGAAATCTGTCAAAAAAAGTATGGATTCATCTGTAAGAAAGATGCCAATTCAGTTCCATCCACTAATGATACAGTTGTCACAAGTCCTGGCTGCAAGCCTGGTTGGATCAGATATGGGTACTACTGCTACTTCATAGGAACAGAAACTAAAACCTTTGAAGAGGCCaaacagatgtgtgtgaaaactgAATCTTATTTGGTTGACATCACAAGCAGAGTTGAAAATGCATTCCTGGTCAGCTTGGTAGGGATGCGACCAGAGAATTACTTCTGGATTGGACTCTCTAATAACAAGGATCAGCACACCTTTGAGTGGACTAACAGCAAAAAGGTTTTGTACACTCACTTCAATGCTGGAATGCCAGGAGGGAAACAAGGCTGTGTCGCCACTACCACAGGAATACGTGCTGGATTATGGGATGTACTAAGTTGCActaataaggaaaaatatatcTGTAAAAAGATGGCTGAGGATGTTATCACTACTCTGGCCCCCATAACTACGCCTGCTCCCAACTGCAGCCACGAATGGTATCCACTTACGAACAGAGACTTCTGTTTCAAGCTATTTAGCGTAGATCCCGAACAAAAGAAGACTTGGTTTGAAGCTCTCGCCTTCTGCCGGGAACTTGGGGGCGATCTACTGAGTATCCACAGTGCTTTTGATATCCAGCTGACTCACTCTATCTTcACCCGCGGAGCATGGATTGGTTACAGTATCCAGGATCCCTCTGTTGGTTATGTATGGAGTGATGGATCCACTACATCATATGAAAACTGGCAAGATGATGAACCAAATAATTACAACAATGTGGAAAACTGTGCTGAAATGACTTTATGGTGGTGGAGTAGAACAGGAGCATGGAATGACCTGCACTGTGAAGACAGAAAGGACTGGTTTTGTCAGATTCGAAGAGGAGTTACACCAGATGAAGTGGAAATTACAACTCAAACATATAATAAAACAGATGATGGCTGGGTTATATTCAATGataatcagtattatatcagTGAATATGCTTATGTCTCTATGGAAGAAGCAAGATGGTTCTGTAAGCAAAGACATGGTGATCTTGTTGTCATCAatgatgagaaagaaagaatatttcTGTGGCATCAGgGAAATGCACATAGTGATTTTTATATTGGCATGATAGTTGATCTGGATAAGTCTTTCACatggatggatgggtctCCAGTTGTATTCGAGGCATGGGAAAAAAACCAGCCCTCTCTTCTGAACAATGAAGAGCGTTGTGTAAAGACAACTTATTCTCAAGGGTTCTGGGAGACTATAAATTGTGGTGAACGACTAAATTTTATCTGTAAACGAAGTGGCTCTGTTGAAGTCAATTCCACTGCTGCCCCCACTGAACCCCCCAGAGGAGGCTGTGCTCCTGACTGGGTGAAGTTTCAGGGAAAGTGTTACAAAATAGGACTGGAGGTGAAGACATGGACGGAAGCCAGATCATACTGTAGACATCTTGGAGGAGATCTCACTTCTATTACTAGCAGACTTCAGCATGcctTTTTAACCTTACTGATGGATGGTGATAACCCGGAAGATTTATGGATTGGCTTCAGTAACTTGGCAAACAGAGGATTTAAATGGACGGATGGGAGTGCGGTCACATATACAGGCTGGGCCAAAGGACAACCAGCAGGAGCAGAATATATGCAAGCGTGGGAAAATGAGGAACCAAGTTGTACTGCAATGGGATCCATGCAAACACTTGAGCTGGGCAAGTGGGTAACAAAAGGCTGTAATGATACCAGTGGATTTATTTGCAGCCGTGCTATTGATCACTTTATTGAACCAAGCCCGACAAAGACACCCACGACTTTCATCAAGCTTGGAAATGATTCTTACATGGTCTTGCAAAAAAACTTGACCTGGAATGAAGCAAAGCATGAGTGTGAGTTAGAGGGCGCACATCTGGCTAGTATTCGGGACTTGCGTGCTCAGTCTTACACTGAGCTGCTGTCTGCGAAATTTGGACAGCCCTTGTGGATTGGCCTTAACAGCAAAGAgACAGATGGATACTTTTTGTGGATTGATAACTGGCAGCTGAATATGGAGAGTTGGGGTGACGATGAACCAAAGAGGGACCACCCCTGTGTTTATGTGGATGtggatggaaaatggaaaactgCCTACTGCAATCAAACAACCTACAGCATTTGTAAGAAATCACCAGACGTTGCTCCACCTCAACCAGAGCAGTACCCTGGTGTATGCCCTGACATAATTGAATCTGACCCGAGGATGATATGGCTGCCTTATAGAGGACATTGCTATGCATTTGTGACTGAAAGCGTATCATGGAGCAAAGCCTCTGTGCTCTGTTTGTCAAGAGGTGCCAGTCTTGTCAGCATTGAAGATACAAGTGAGGCCAAGTTTATAGAGAGTTACATCAGTTTTCTTGGGAGTGATCATGGCAAGTTCTCAATAGGCCTTTTTAAGACACATGCAGATCACTGGCTGTGGCTGGACAAAACTGTTGTGGATTACACTAATTGGGAAAAATCTACAGACTATGATGGTTATAAACAAGACTGCGCGTTTATCTCCACCACAACTAAACAATGGGGAAAACAACACTGCTTATATGATTATGCATCATTCATCTGCAAAACAGCCAAGGTTCCAAAGCCAACCACTTCTCCAGGAACTACAGATGAGGTTGTAACACATAGGAACCTTACTGGAGTGGCTGTGGCTGTGGTGCTTGCAGTGCTGTTTGTGCTCGCTGGATTGGCTTACATCTACCACAGAAGGACCACCAGCCAGGTTGCTGCACCTCCATATGCGAACCCAATGTATTACAGTACAGAATCCCCCTTGCCAGAGGACAAAGATACCAAAACATTAGTTGACCACATGGAAATTAACGAATAAGTTTCATgaatattctttttaaattggttcttttttatattaatcattttattctttatataaacATGAATGTTGACTAAAAGCTTCCACATTTGGGCTGTTAAGTAAGTGGTTTTGGAAATTATATCAGTGCTTTGGGGCACAAATGTTTATCAGAAACTGGAAACTGGTGTTACACTTACTAACTAGAATTGCTTTGCTGCTCAAatacttgtttgttttaagttaaataaaagaatatcaAAGATTTAGTCTGCA
>XM_034304094.1
AAGATGTGTGGTCTGCTAGAAAAACGGACACCAGTGCCAAAGTGACATTGTGAGACTTGGACCAAAGGCAGGTTTGACACAGGATTTGGCTTGTGTAAGGCTGAAAAAGATGATGAAAAGCAAGAAGATGAAAATAGCTGCTGTTATTGTGCTCCTGGTTAAGATATCGCACTGCTTTGCTTATCCAGatGGAAATTTTTTGATCTACAATGCACATAAGAACAGATGCCTGACGGACAGCCTACAATGGTTAGGAGTGTGTGACCCTCTCAGCGCAAAACAGCAGTTTCGCTGGACTTCTGAGGACCGAATCTTTAATGTTGCCCTGAAGAAATGCCTTGGCATAGGGAGCAGGAAGGAGGGCAATAAACTGCAGTGGTATATCTGTAATGCTAGAAATGACCTCCAAAAGTGGGAATGCAAAAACAATTCACAGTTTAGCCTGAAGAATGAGTCGCTGTACTTGTCCCTTCAGGGAGAATCTTATTCTCTAACACTGTCCAAAAAGCAGGAAGTCAAGAGCCAATGGACAATACATGGAACAACGGACAGCATCTGCTCTCGACCATATCAAGAATTATATACACTTAAAGGAAATGGCTTTGGTCGTCCATGTAATTTTCCATTCAGGTACAAAAATAAATGGTATGCAGGCTGCACAAAGGACGACTCCTCTAAACGCGAGTGGTGTGCAACTGAAAGTATATATGAAGATAATGAGCTCTGGGGTTATTGCCCGACAAGTCAAATAGatGACTTCTGGACCAAGAACCCTCTCACAGGCATTTATTACCAGATAAACAAAGATTCTGCACTTACCTGGTATCAGGCCAGAAAAAGCTGCCAGCAGCAGGGGGGAGACCTGTTGAGCATCACTGAGGCCCACGAGCAAGCTTTCATATCAGGTTTGACTCAGGGGAATGGCCCAGTATTGTGGACAGGTTTAAACAGTTTAGATGCCTCAAGTGGATGGCACTGGATCAATGGGCAACCTTTACGTTATTTAAACTGGCTCAGTGGGCAACCATCTTCTCAACCAGGTCGTAGCTGTGGAGCGATAAATCAGCAACATGATTCCAAATGGTCCACCGATATTTGTTCTGCGAAACGTGGATATATCTGCCAAAAAGTTCTCTACACTCCCACTATTCCACCAGTGGTGCACACAGGTTCTTGCCCCAGACCATGGATACCTTACTCAGGTCACTGCTACTATCTTAATCGCGCCAAAAAAACATGGCTGGAGGCAAAAGATGCCTGTCGGCGTGATGGTGGAGACCTGCTGAGCATTCTCAGTATAGAAGAACAAAGCTTTGCCATCTCACAACTTGGATACTTAAAGACGGATGAGTTGTGGATTGGCTTTAATGACCTCAAGACTGCAATGTTTTTTGAATGGACTGACCACTCCAGTGTCCCATTTGTCTCATGGGCGATGAATGAGCCAAGCCACAATGCTGACAATAAAGAAGACTGCGTTTTAATAAGAGGAGAGGAGGGCAAGTGGGCTGATGAAATCTGTCAAAAAAAGTATGGATTCATCTGTAAGAAAGATGCCAATTCAGTTCCATCCACTAATGATACAGTTGTCACAAGTCCTGGCTGCAAGCCTGGTTGGATCAGATATGGGTACTACTGCTACTTCATAGGAACAGAAACTAAAACCTTTGAAGAGGCCaaacagatgtgtgtgaaaactgAATCTTATTTGGTTGACATCACAAGCAGAGTTGAAAATGCATTCCTGGTCAGCTTGGTAGGGATGCGACCAGAGAATTACTTCTGGATTGGACTCTCTAATAACAAGGATCAGCACACCTTTGAGTGGACTAACAGCAAAAAGGTTTTGTACACTCACTTCAATGCTGGAATGCCAGGAGGGAAACAAGGCTGTGTCGCCACTACCACAGGAATACGTGCTGGATTATGGGATGTACTAAGTTGCActaataaggaaaaatatatcTGTAAAAAGATGGCTGAGGATGTTATCACTACTCTGGCCCCCATAACTACGCCTGCTCCCAACTGCAGCCACGAATGGTATCCACTTACGAACAGAGACTTCTGTTTCAAGCTATTTAGCGTAGATCCCGAACAAAAGAAGACTTGGTTTGAAGCTCTCGCCTTCTGCCGGGAACTTGGGGGCGATCTACTGAGTATCCACAGTGCTTTTGATATCCAGCTGACTCACTCTATCTTcACCCGCGGAGCATGGATTGGTTACAGTATCCAGGATCCCTCTGTTGGTTATGTATGGAGTGATGGATCCACTACATCATATGAAAACTGGCAAGATGATGAACCAAATAATTACAACAATGTGGAAAACTGTGCTGAAATGACTTTATGGTGGTGGAGTAGAACAGGAGCATGGAATGACCTGCACTGTGAAGACAGAAAGGACTGGTTTTGTCAGATTCGAAGAGGAGTTACACCAGATGAAGTGGAAATTACAACTCAAACATATAATAAAACAGATGATGGCTGGGTTATATTCAATGataatcagtattatatcagTGAATATGCTTATGTCTCTATGGAAGAAGCAAGATGGTTCTGTAAGCAAAGACATGGTGATCTTGTTGTCATCAatgatgagaaagaaagaatatttcTGTGGCATCAGgGAAATGCACATAGTGATTTTTATATTGGCATGATAGTTGATCTGGATAAGTCTTTCACatggatggatgggtctCCAGTTGTATTCGAGGCATGGGAAAAAAACCAGCCCTCTCTTCTGAACAATGAAGAGCGTTGTGTAAAGACAACTTATTCTCAAGGGTTCTGGGAGACTATAAATTGTGGTGAACGACTAAATTTTATCTGTAAACGAAGTGGCTCTGTTGAAGTCAATTCCACTGCTGCCCCCACTGAACCCCCCAGAGGAGGCTGTGCTCCTGACTGGGTGAAGTTTCAGGGAAAGTGTTACAAAATAGGACTGGAGGTGAAGACATGGACGGAAGCCAGATCATACTGTAGACATCTTGGAGGAGATCTCACTTCTATTACTAGCAGACTTCAGCATGcctTTTTAACCTTACTGATGGATGGTGATAACCCGGAAGATTTATGGATTGGCTTCAGTAACTTGGCAAACAGAGGATTTAAATGGACGGATGGGAGTGCGGTCACATATACAGGCTGGGCCAAAGGACAACCAGCAGGAGCAGAATATATGCAAGCGTGGGAAAATGAGGAACCAAGTTGTACTGCAATGGGATCCATGCAAACACTTGAGCTGGGCAAGTGGGTAACAAAAGGCTGTAATGATACCAGTGGATTTATTTGCAGCCGTGCTATTGATCACTTTATTGAACCAAGCCCGACAAAGACACCCACGACTTTCATCAAGCTTGGAAATGATTCTTACATGGTCTTGCAAAAAAACTTGACCTGGAATGAAGCAAAGCATGAGTGTGAGTTAGAGGGCGCACATCTGGCTAGTATTCGGGACTTGCGTGCTCAGTCTTACACTGAGCTGCTGTCTGCGAAATTTGGACAGCCCTTGTGGATTGGCCTTAACAGCAAAGAgACAGATGGATACTTTTTGTGGATTGATAACTGGCAGCTGAATATGGAGAGTTGGGGTGACGATGAACCAAAGAGGGACCACCCCTGTGTTTATGTGGATGtggatggaaaatggaaaactgCCTACTGCAATCAAACAACCTACAGCATTTGTAAGAAATCACCAGACGTTGCTCCACCTCAACCAGAGCAGTACCCTGGTGTATGCCCTGACATAATTGAATCTGACCCGAGGATGATATGGCTGCCTTATAGAGGACATTGCTATGCATTTGTGACTGAAAGCGTATCATGGAGCAAAGCCTCTGTGCTCTGTTTGTCAAGAGGTGCCAGTCTTGTCAGCATTGAAGATACAAGTGAGGCCAAGTTTATAGAGAGTTACATCAGTTTTCTTGGGAGTGATCATGGCAAGTTCTCAATAGGCCTTTTTAAGACACATGCAGATCACTGGCTGTGGCTGGACAAAACTGTTGTGGATTACACTAATTGGGAAAAATCTACAGACTATGATGGTTATAAACAAGACTGCGCGTTTATCTCCACCACAACTAAACAATGGGGAAAACAACACTGCTTATATGATTATGCATCATTCATCTGCAAAACAGCCAAGGTTCCAAAGCCAACCACTTCTCCAGGAACTACAGATGAGGTTGTAACACATAGGAACCTTACTGGAGTGGCTGTGGCTGTGGTGCTTGCAGTGCTGTTTGTGCTCGCTGGATTGGCTTACATCTACCACAGAAGGACCACCAGCCAGGTTGCTGCACCTCCATATGCGAACCCAATGTATTACAGTACAGAATCCCCCTTGCCAGAGGACAAAGATACCAAAACATTAGTTGACCACATGGAAATTAACGAATAAGTTTCATgaatattctttttaaattggttcttttttatattaatcattttattctttatataaacATGAATGTTGACTAAAAGCTTCCACATTTGGGCTGTTAAGTAAGTGGTTTTGGAAATTATATCAGTGCTTTGGGGCACAAATGTTTATCAGAAACTGGAAACTGGTGTTACACTTACTAACTAGAATTGCTTTGCTGCTCAAatacttgtttgttttaagttaaataaaagaatatcaAAGATTTAGTCTGCA

Function

NR:

description
PREDICTED: macrophage mannose receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026936974.2 True 4749 mRNA 0.43 32 23150126 23174379
XM_034304094.1 False 4669 mRNA 0.43 31 23150126 23173899

Neighbor

gene id symbol gene type direction distance location
clul1 clul1 coding downstream 100013 23041108 ~ 23050113 (-)
adcyap1b LOC100304507 coding downstream 159510 22986661 ~ 22990616 (-)
emilin2a LOC108268130 coding downstream 298968 22838027 ~ 22851158 (-)
rgs20 rgs20,LOC108440656,LOC107584260,LOC107746905,LOC107686043,LOC107664043 coding downstream 448975 22679189 ~ 22701151 (-)
LOC113540005 NA coding downstream 487644 22653613 ~ 22662482 (-)
si:ch211-106h4.9 LOC108267629 coding upstream 55671 23230050 ~ 23263297 (-)
e2f5 LOC108268108,LOC108437220 coding upstream 110657 23285036 ~ 23291998 (-)
and2 LOC108267411 coding upstream 144156 23318535 ~ 23322611 (-)
nol7 NA coding upstream 202077 23376456 ~ 23382888 (-)
LOC113540008 NA coding upstream 235035 23409414 ~ 23418890 (-)
G69320 NA non-coding downstream 94743 23054514 ~ 23055383 (-)
G69254 NA non-coding downstream 340877 22808906 ~ 22809249 (-)
G69248 LOC108268132,LOC108440660,LOC107664077,LOC107746915 non-coding downstream 344218 22803386 ~ 22805908 (-)
G69233 NA non-coding downstream 378114 22771386 ~ 22772012 (-)
G69203 NA non-coding downstream 472208 22677376 ~ 22677918 (-)
LOC117597081 NA non-coding upstream 97783 23272162 ~ 23273614 (-)
G69503 NA non-coding upstream 104196 23278575 ~ 23278782 (-)
G69551 NA non-coding upstream 222285 23396664 ~ 23397963 (-)
LOC113540115 NA non-coding upstream 278854 23453233 ~ 23454221 (-)
G69649 NA non-coding upstream 419952 23594331 ~ 23594544 (-)
LOC113540019 LOC108268143 other downstream 514038 22629615 ~ 22636088 (-)
G68760 NA other downstream 1214957 21934526 ~ 21935169 (-)
LOC113539989 LOC108436138 other downstream 1779116 21354619 ~ 21371010 (-)
G68462 NA other downstream 1820876 21326046 ~ 21329250 (-)
chchd7 chchd7 other downstream 1836229 21304692 ~ 21313897 (-)
lrrcc1 lrrcc1 other upstream 117669 23292048 ~ 23306934 (-)
retreg1 fam134b other upstream 156637 23331016 ~ 23346573 (-)
LOC117597073 LOC108267227,LOC108267226 other upstream 305586 23479965 ~ 23483850 (-)
G69592 LOC108267226,LOC108267227 other upstream 319000 23493379 ~ 23493919 (-)
LOC117597074 NA other upstream 320656 23495035 ~ 23495897 (-)

Expression


Co-expression Network